View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_42 (Length: 310)
Name: NF1911_low_42
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 86 - 291
Target Start/End: Complemental strand, 27802596 - 27802388
Alignment:
| Q |
86 |
aatgataaagattttttgtatctgtatttacgcacatacatgataaatatatccatatgcctgagttaggagataagatctcaagatagctaaatgtgaa |
185 |
Q |
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| T |
27802596 |
aatgataaagattttttgtatatgtatttacgcacatacatgataaatatatccatatgcttgagttaggagataagatctcaagatagctaaatgtgaa |
27802497 |
T |
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| Q |
186 |
tttgata---ttttgaaatatcacggtgtgactacattaaagtcacacactagattgaagctaacatttaaagtttaaaaaactgctatgaaaagggcta |
282 |
Q |
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| T |
27802496 |
tttgatatttttttgaaatatcacggtgtgactacattaaagtcacacactacattgaagctaacatttaaagtttaaaaaactactatgaaaagggcta |
27802397 |
T |
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| Q |
283 |
taaatgtac |
291 |
Q |
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||||||||| |
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| T |
27802396 |
taaatgtac |
27802388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 46 - 298
Target Start/End: Complemental strand, 27810005 - 27809753
Alignment:
| Q |
46 |
ttgagtctaaaaacttatttatatagtcctaacatcgtccaatgataaagattttttgtatctgtatttacgcacatacatgataaatatatccatatgc |
145 |
Q |
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| T |
27810005 |
ttgagtctaaaaagttatttatatagtcctaacagcttccattgctgaatattttttgtatctgtatttacgcacatccatgaaaaatatatccatactc |
27809906 |
T |
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| Q |
146 |
ctgagttaggagataagatctcaagatagctaaatgtgaatttgatattttgaaatatcacggtgtgactacattaaagtcacacactagattgaagcta |
245 |
Q |
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| T |
27809905 |
ctgagttgggagatgagatatcaagattgctaaatgtgaatttggtattttgaaatgtcacggtgtgaccacattaaagtcacagactagattgaagcta |
27809806 |
T |
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| Q |
246 |
acatttaaagtttaaaaaactgctatgaaaagggctataaatgtacggtgatg |
298 |
Q |
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| T |
27809805 |
acatttgaagcttaaaaaactgctatgaaaagggctataaatgtacggtgatg |
27809753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 4 - 291
Target Start/End: Complemental strand, 27799234 - 27798953
Alignment:
| Q |
4 |
tctaatttcaataatctatatgtttaagtatgtttctttatcttgagtctaaaaacttatttatatagtcctaacatcgtccaatgataaagattttttg |
103 |
Q |
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|||||||||||| ||||||||||||||||||||||||| || ||||||| ||||| |||||||||||||||||||||| ||||||||| || |||||| |
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| T |
27799234 |
tctaatttcaatgatctatatgtttaagtatgtttcttaatgttgagtcaaaaaaattatttatatagtcctaacatcttccaatgatgaa-tttttttt |
27799136 |
T |
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| Q |
104 |
tatctgtatttacgcacatacatgataaatatatccatatgcctgagttaggagataagatctcaagatagctaaatgtgaatttgatattttgaaatat |
203 |
Q |
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| T |
27799135 |
tatttgtatttatgcatatacatgaaaaatatatccatat-----atttgggagataagatctcaaaataattaaatgagaatttgatattttgaaatat |
27799041 |
T |
|
| Q |
204 |
cacggtgtgactacattaaagtcacacactagattgaagctaacatttaaagtttaaaaaactgctatgaaaagggctataaatgtac |
291 |
Q |
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| T |
27799040 |
cacggtgtgaccacattagatgtacatcgtagattgaagttaacatttgaagcttaaaaatctgctacaaaaggggtaataaatgtac |
27798953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 27802715 - 27802613
Alignment:
| Q |
1 |
ttgtctaatttcaataatctatatgtttaagtatgtttctttatctt-gagtctaaaaacttatttatatagtcctaacatcgtccaatgataaagattt |
99 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27802715 |
ttgtctagtttcaataatctatatgtttaagtatgtttctttatttttgagtctaaaaacttatttatatagtcctaacatcgtccaatgataaagattt |
27802616 |
T |
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| Q |
100 |
ttt |
102 |
Q |
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||| |
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| T |
27802615 |
ttt |
27802613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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