View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1911_low_43 (Length: 304)

Name: NF1911_low_43
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1911_low_43
NF1911_low_43
[»] chr8 (4 HSPs)
chr8 (163-304)||(12156239-12156380)
chr8 (163-224)||(19263578-19263639)
chr8 (244-294)||(19263677-19263727)
chr8 (261-293)||(757764-757796)
[»] chr2 (1 HSPs)
chr2 (166-294)||(6909352-6909500)
[»] scaffold1743 (2 HSPs)
scaffold1743 (163-224)||(462-523)
scaffold1743 (258-293)||(575-610)
[»] chr3 (2 HSPs)
chr3 (244-294)||(50066-50116)
chr3 (163-224)||(50154-50215)
[»] chr4 (1 HSPs)
chr4 (163-224)||(22681437-22681497)
[»] chr1 (1 HSPs)
chr1 (246-296)||(47782844-47782894)
[»] scaffold0131 (1 HSPs)
scaffold0131 (258-294)||(17316-17352)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 163 - 304
Target Start/End: Complemental strand, 12156380 - 12156239
Alignment:
Q  163 aaagagcaaccacacaagtgtaagagtttgttcaacttccactgatctattcaatgttagactcacaacatattttcgcctcaagtatcgagaagttcta 262  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12156380 aaagagcaaccacataagtgtaagagtttgttcaacttccactgatctattcaatgttagactcacaacatattttcgcctcaagtatcgagaagttcta 12156281  T
Q  263 gcccgtgcttggcacgggtccacatactagttatcatataat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12156280 gcccgtgcttggcacgggtccacatactagttatcatataat 12156239  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 19263578 - 19263639
Alignment:
Q  163 aaagagcaaccacacaagtgtaagagtttgttcaacttccactgatctattcaatgttagac 224  Q
    ||||| |||||| | |||||||||||||||||||||||||| || |||||||||||||||||    
T  19263578 aaagaacaaccaaaaaagtgtaagagtttgttcaacttccattgttctattcaatgttagac 19263639  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 19263677 - 19263727
Alignment:
Q  244 caagtatcgagaagttctagcccgtgcttggcacgggtccacatactagtt 294  Q
    ||||||| || || |||||||||||||||||||||||||||||||||||||    
T  19263677 caagtatggataaattctagcccgtgcttggcacgggtccacatactagtt 19263727  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 757796 - 757764
Alignment:
Q  261 tagcccgtgcttggcacgggtccacatactagt 293  Q
    |||||||||||||||||||||||||||||||||    
T  757796 tagcccgtgcttggcacgggtccacatactagt 757764  T

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Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 166 - 294
Target Start/End: Complemental strand, 6909500 - 6909352
Alignment:
Q  166 gagcaaccacacaagtgtaagagtttgttcaacttccactgatctattcaatgttagac--------------------tcacaacatattttcgcctca 245  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||                    |||||||||||| ||||||||    
T  6909500 gagcaaccacacaagtgtaagagtttgttcaacttccattgttctattcaatgttagaccgtaactgacacttgataaatcacaacatattctcgcctca 6909401  T
Q  246 agtatcgagaagttctagcccgtgcttggcacgggtccacatactagtt 294  Q
    ||||| ||||| |||||| |||| ||||||||||||||| |||||||||    
T  6909400 agtatggagaaattctagtccgtacttggcacgggtccaaatactagtt 6909352  T

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Target: scaffold1743 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 462 - 523
Alignment:
Q  163 aaagagcaaccacacaagtgtaagagtttgttcaacttccactgatctattcaatgttagac 224  Q
    |||||||||||| | |||||||||||||| ||||||||||| || |||||||||||||||||    
T  462 aaagagcaaccaaaaaagtgtaagagtttattcaacttccattgttctattcaatgttagac 523  T

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Target: scaffold1743; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 293
Target Start/End: Original strand, 575 - 610
Alignment:
Q  258 ttctagcccgtgcttggcacgggtccacatactagt 293  Q
    ||||||||||||||||||||||||||||||||||||    
T  575 ttctagcccgtgcttggcacgggtccacatactagt 610  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 50116 - 50066
Alignment:
Q  244 caagtatcgagaagttctagcccgtgcttggcacgggtccacatactagtt 294  Q
    ||||||| || || |||||||||||||||||||||||||||||||||||||    
T  50116 caagtatggataaattctagcccgtgcttggcacgggtccacatactagtt 50066  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 50215 - 50154
Alignment:
Q  163 aaagagcaaccacacaagtgtaagagtttgttcaacttccactgatctattcaatgttagac 224  Q
    |||||||||||| | |||||||||| ||||||||||||||| || |||||| ||||||||||    
T  50215 aaagagcaaccaaaaaagtgtaagaatttgttcaacttccattgttctatttaatgttagac 50154  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 22681437 - 22681497
Alignment:
Q  163 aaagagcaaccacacaagtgtaagagtttgttcaacttccactgatctattcaatgttagac 224  Q
    |||||||||||||| ||| ||||||||||| |||||||||| || | |||||||||||||||    
T  22681437 aaagagcaaccacataag-gtaagagtttgctcaacttccattgttttattcaatgttagac 22681497  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 47782894 - 47782844
Alignment:
Q  246 agtatcgagaagttctagcccgtgcttggcacgggtccacatactagttat 296  Q
    ||||| ||||| |||| |||||||||||||||| || ||||||||||||||    
T  47782894 agtatggagaaattcttgcccgtgcttggcacgagttcacatactagttat 47782844  T

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Target: scaffold0131 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 17352 - 17316
Alignment:
Q  258 ttctagcccgtgcttggcacgggtccacatactagtt 294  Q
    |||||||||||| |||||||||||||||| |||||||    
T  17352 ttctagcccgtgtttggcacgggtccacacactagtt 17316  T

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