View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1911_low_45 (Length: 287)

Name: NF1911_low_45
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1911_low_45
NF1911_low_45
[»] chr3 (2 HSPs)
chr3 (1-270)||(46360348-46360612)
chr3 (83-130)||(30122036-30122083)
[»] chr4 (2 HSPs)
chr4 (83-130)||(23673437-23673484)
chr4 (78-130)||(52840280-52840332)
[»] chr2 (3 HSPs)
chr2 (83-130)||(41517445-41517492)
chr2 (9-46)||(21738246-21738283)
chr2 (81-130)||(472424-472473)
[»] chr6 (1 HSPs)
chr6 (83-140)||(24252962-24253019)
[»] chr7 (3 HSPs)
chr7 (83-135)||(2399781-2399833)
chr7 (76-121)||(23097575-23097620)
chr7 (4-40)||(41150034-41150070)
[»] chr1 (1 HSPs)
chr1 (81-130)||(5700113-5700162)
[»] chr5 (1 HSPs)
chr5 (9-53)||(4695128-4695172)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 46360612 - 46360348
Alignment:
Q  1 aatattcacaatgcactgattatataaaatttcataaaaacttactccctccaatcacatttatttgctcataaaaagttaaatacattaattattcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||    ||||||||| ||| ||||||||||||||    
T  46360612 aatattcacaatgcactgattatataaaatttcataaaaacttactccctccagtcacatttataagc----aaaaagttagatatattaattattcaat 46360517  T
Q  101 atgcttaaaaagttatattttgcttataaacatgatcagataaaatactatttaatgtcttaaaaagtgctcatagacaatagttatcattttccataaa 200  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||    
T  46360516 atgcttaaaaaattatattttgcttataaacgtgaccagataaaatactatttaaggtcttaaaaaatgctcatagacaatcgttatcattttccataaa 46360417  T
Q  201 ttaaatccaccgatatattttgtctttatttgctcatagcccgcgaagcaaaaattagatggaggtagtg 270  Q
    ||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46360416 ttaaatcca-caatatattttgcctttatttgctcatagcccgcgaagcaaaaattagatggaggtagtg 46360348  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 30122036 - 30122083
Alignment:
Q  83 atacattaattattcaatatgcttaaaaagttatattttgcttataaa 130  Q
    |||||||||||||||||||| | |||||| |||| |||||||||||||    
T  30122036 atacattaattattcaatatacctaaaaaattattttttgcttataaa 30122083  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 23673437 - 23673484
Alignment:
Q  83 atacattaattattcaatatgcttaaaaagttatattttgcttataaa 130  Q
    |||||||||||||||||||| | ||||||||||| |||||||||||||    
T  23673437 atacattaattattcaatatacctaaaaagttattttttgcttataaa 23673484  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 52840332 - 52840280
Alignment:
Q  78 gttaaatacattaattattcaatatgcttaaaaagttatattttgcttataaa 130  Q
    |||| |||||||||||||| ||| | |||||||| |||| |||||||||||||    
T  52840332 gttagatacattaattatttaatgtacttaaaaaattattttttgcttataaa 52840280  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 41517445 - 41517492
Alignment:
Q  83 atacattaattattcaatatgcttaaaaagttatattttgcttataaa 130  Q
    |||||||||||||||||| | ||||||||||||| |||||||||||||    
T  41517445 atacattaattattcaatgtacttaaaaagttattttttgcttataaa 41517492  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 21738283 - 21738246
Alignment:
Q  9 caatgcactgattatataaaatttcataaaaacttact 46  Q
    |||||||||||||||||||||||| |||||||||||||    
T  21738283 caatgcactgattatataaaattttataaaaacttact 21738246  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 472473 - 472424
Alignment:
Q  81 aaatacattaattattcaatatgcttaaaaagttatattttgcttataaa 130  Q
    |||||||||| ||||||||||  | ||||||||||||||||| |||||||    
T  472473 aaatacattagttattcaataaacctaaaaagttatattttgtttataaa 472424  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 24252962 - 24253019
Alignment:
Q  83 atacattaattattcaatatgcttaaaaagttatattttgcttataaacatgatcaga 140  Q
    |||||||||||||||||| | | ||||||||||| ||||||||||||| |||| ||||    
T  24252962 atacattaattattcaatgtacctaaaaagttattttttgcttataaatatgaccaga 24253019  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 2399781 - 2399833
Alignment:
Q  83 atacattaattattcaatatgcttaaaaagttatattttgcttataaacatga 135  Q
    |||||||||||||||||||| ||||||||||||| ||||  ||||||| ||||    
T  2399781 atacattaattattcaatatacttaaaaagttattttttatttataaatatga 2399833  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 23097575 - 23097620
Alignment:
Q  76 aagttaaatacattaattattcaatatgcttaaaaagttatatttt 121  Q
    ||||||||||||||||||||||||| | | ||||||||||| ||||    
T  23097575 aagttaaatacattaattattcaatctacctaaaaagttatttttt 23097620  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 41150070 - 41150034
Alignment:
Q  4 attcacaatgcactgattatataaaatttcataaaaa 40  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  41150070 attcacaatgcactgattatacaaattttcataaaaa 41150034  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 5700113 - 5700162
Alignment:
Q  81 aaatacattaattattcaatatgcttaaaaagttatattttgcttataaa 130  Q
    |||| ||||||||||||||| | ||||||||||| | |||||||||||||    
T  5700113 aaatgcattaattattcaatgtacttaaaaagttgttttttgcttataaa 5700162  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 4695128 - 4695172
Alignment:
Q  9 caatgcactgattatataaaatttcataaaaacttactccctcca 53  Q
    |||||||||||||||| ||| || |||||||| ||||||||||||    
T  4695128 caatgcactgattatacaaacttccataaaaaattactccctcca 4695172  T

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