View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1911_low_47 (Length: 272)
Name: NF1911_low_47
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_47 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 16641192 - 16641436
Alignment:
| Q |
12 |
gattatactacatttaaacagatggtagatcaagtcagaatagtgaagagcatcacaatgcaaaatgttataatttatcaaaatgatcaacaatgacatt |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16641192 |
gattatattacatttaaacagatggtagatcaagtcagaatagtgaagagcatcacaatgcaaaatgttataatttatcaaaatgatcaacaatgacatt |
16641291 |
T |
|
| Q |
112 |
cttatattctttgcaatataaggagaatgtcagtttattatcacaagataaagttaacttccaaaaagagttgagagaaaacagattttaacatttgaac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16641292 |
cttatattctttgcaatataaggagaatgtcagtttattatcataagataaagttaacttccaaaaagagttgagagaaaacagattttaacatttgaac |
16641391 |
T |
|
| Q |
212 |
ttatgcttaacacaatctgttacacaactggatattataaacaac |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16641392 |
ttatgcttaacacaatctgttacacaactggatattataaacaac |
16641436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 14630605 - 14630711
Alignment:
| Q |
90 |
caaaatgatcaacaatgacattcttatattctttgcaatataaggagaatgtcagtttattatcacaagataaagttaacttccaaaaagagttgagaga |
189 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||| |||||| |||||| |||||||||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
14630605 |
caaaatgctcaacaatggcattcttatattctttgcaataaaaggaggatgtcaatttattatcataagataaagttaacttccaaaaggagttaagaga |
14630704 |
T |
|
| Q |
190 |
aaacaga |
196 |
Q |
| |
|
||||||| |
|
|
| T |
14630705 |
aaacaga |
14630711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 14630780 - 14630840
Alignment:
| Q |
194 |
agattttaacatttgaacttatgcttaacacaatctgttacacaactggatattataaaca |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14630780 |
agattttaacatttgaacttatgcttaacacaatctgttacacaactggatattataaaca |
14630840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 16632288 - 16632338
Alignment:
| Q |
12 |
gattatactacatttaaacagatggtagatcaagtcagaatagtgaagagc |
62 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
16632288 |
gattatattacatttaaacagatggtagatcatgtcagaatattgaagagc |
16632338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 14630471 - 14630518
Alignment:
| Q |
15 |
tatactacatttaaacagatggtagatcaagtcagaatagtgaagagc |
62 |
Q |
| |
|
|||| |||||||| ||||||||||||||| ||||||||| |||||||| |
|
|
| T |
14630471 |
tatattacatttacacagatggtagatcatgtcagaatattgaagagc |
14630518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 15621167 - 15621125
Alignment:
| Q |
194 |
agattttaacatttgaacttatgcttaacacaatctgttacac |
236 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
15621167 |
agattttaacgtttgaacttatgcttaacacattttgttacac |
15621125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 38881181 - 38881224
Alignment:
| Q |
194 |
agattttaacatttgaacttatgcttaacacaatctgttacaca |
237 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38881181 |
agatttcaacatttggacttatgcttaacacaatctgttacaca |
38881224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University