View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_49 (Length: 259)
Name: NF1911_low_49
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 55471866 - 55471635
Alignment:
| Q |
20 |
agaagaaataattagaagcatatcgtaaaatccactttcctgcacttatactggaaacacttgtactcatcttcttttaaacacaataatttaatttgtg |
119 |
Q |
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| T |
55471866 |
agaagaaataattagaagcatatcgtaaaatccattttcctgcacttatactggaaacacttgtactcatcttcttttaaacacaataatttaatttgtg |
55471767 |
T |
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| Q |
120 |
atgaaaaaagtcttgccctttagctaatttgattaaaactaattggagttttctgtgcatattaccttctccttcagatctccggtctgaatggctatgt |
219 |
Q |
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| T |
55471766 |
atgaaaaaagtcttgctctttagctaatttgattaaaactaattggagttttctgtgcatattaccttctccttcagatctcaggtctgaagggctatgt |
55471667 |
T |
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| Q |
220 |
tcattgactcctaaagaatccatacctatgct |
251 |
Q |
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| T |
55471666 |
tcattgactcctaaagaatccatacttatgct |
55471635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 62 - 242
Target Start/End: Original strand, 55439748 - 55439928
Alignment:
| Q |
62 |
cacttatactggaaacacttgtactcatcttcttttaaacacaataatttaa--tttgtgatgaaaaaagtcttgccctttagctaatttgattaaaact |
159 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||||| || | | ||||||| | ||||||| ||| | |
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| T |
55439748 |
cacttatactggaaacacttgtactcgtcttcttttaaacacaataattttaattttgagatgaaaaatgttt--ctctttagcaactttgatttaaagt |
55439845 |
T |
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| Q |
160 |
aattggagttttctgtgcatattaccttctccttcagatctccggtctgaatggctatgttcattgactcctaaagaatccat |
242 |
Q |
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| T |
55439846 |
aattggagttttctgtgcagattaccttctccttcagagctcaggtctgaagggctatgtccattgacacctgaagaatccat |
55439928 |
T |
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