View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1911_low_50 (Length: 259)

Name: NF1911_low_50
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1911_low_50
NF1911_low_50
[»] chr1 (4 HSPs)
chr1 (18-246)||(16783954-16784182)
chr1 (25-246)||(14229730-14229952)
chr1 (45-123)||(25031328-25031406)
chr1 (54-232)||(1016665-1016843)
[»] chr5 (2 HSPs)
chr5 (67-242)||(14700750-14700925)
chr5 (164-232)||(5429670-5429738)
[»] chr4 (2 HSPs)
chr4 (87-236)||(27016941-27017090)
chr4 (45-106)||(50722957-50723018)
[»] scaffold0381 (1 HSPs)
scaffold0381 (87-236)||(2692-2843)
[»] chr8 (4 HSPs)
chr8 (45-165)||(6802404-6802524)
chr8 (45-108)||(44873685-44873748)
chr8 (45-107)||(2148781-2148843)
chr8 (54-232)||(45485855-45486033)
[»] chr7 (3 HSPs)
chr7 (54-232)||(43265594-43265772)
chr7 (67-123)||(2945060-2945116)
chr7 (44-108)||(33941280-33941344)
[»] chr6 (2 HSPs)
chr6 (54-232)||(24901956-24902134)
chr6 (54-232)||(18817187-18817365)
[»] chr3 (4 HSPs)
chr3 (147-223)||(2112304-2112382)
chr3 (45-108)||(26285476-26285539)
chr3 (54-232)||(26903425-26903603)
chr3 (54-232)||(36617437-36617615)
[»] chr2 (1 HSPs)
chr2 (54-107)||(4075966-4076019)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 16784182 - 16783954
Alignment:
Q  18 atatgtcgcatgtttgagtcaacttcatcatttgtagcttttaacgtggacaaattattaaggatggtcgagctttatccaaatgattttaaggacgtgt 117  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16784182 atatgttgcatgtttgagtcaacttcatcatttgtagtttttaacgtggacaaattattaaggatgatcgagctttatccaaatgattttaaggacgtgt 16784083  T
Q  118 cggaagagttggtgcgctatcaatttcggaattatcttagaaatgttcgaggtgatcccaattttacaaatttaaaaggacttttagacctttgtgcaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  16784082 cggaagagttggtgcgctatcaatttcggaattatcttaaaaatgttcgaggtgatcccaattttacaaacttaaaaggacttttagacctttatgcaaa 16783983  T
Q  218 acttgtaaaaacaaacaagagcactacct 246  Q
    |||||||||||||||||||||||||||||    
T  16783982 acttgtaaaaacaaacaagagcactacct 16783954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 246
Target Start/End: Original strand, 14229730 - 14229952
Alignment:
Q  25 gcatgtttgagtcaactt-catcatttgtagcttttaacgtggacaaattattaaggatggtcgagctttatccaaatgattttaaggacgtgtcggaag 123  Q
    ||||| ||||||||| || ||||||||  ||||||| | || ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||    
T  14229730 gcatgcttgagtcaaatttcatcatttaaagcttttgatgtagacaaattattgaggatggtcgagctttatccaaatgattttaaggacctgtcgaaag 14229829  T
Q  124 agttggtgcgctatcaatttcggaattatcttagaaatgttcgaggtgatcccaattttacaaatttaaaaggacttttagacctttgtgcaaaacttgt 223  Q
       ||||||||||||||  ||  |||||  |||||||||||||||||||||||||||||  ||| || |||||| ||| ||||||||||||||  |||||    
T  14229830 ttgtggtgcgctatcaacatcataattaagttagaaatgttcgaggtgatcccaattttgaaaagttgaaaggaatttcagacctttgtgcaacgcttgt 14229929  T
Q  224 aaaaacaaacaagagcactacct 246  Q
     |||||||||||| ||| |||||    
T  14229930 gaaaacaaacaagtgcattacct 14229952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 25031406 - 25031328
Alignment:
Q  45 tcatttgtagcttttaacgtggacaaattattaaggatggtcgagctttatccaaatgattttaaggacgtgtcggaag 123  Q
    ||||||| || |||||| ||| |||||||||| |||||| | ||| ||||||||||||||||||  || ||||||||||    
T  25031406 tcatttgcagtttttaatgtgaacaaattattgaggatgattgagttttatccaaatgattttatagatgtgtcggaag 25031328  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 1016665 - 1016843
Alignment:
Q  54 gcttttaacgtggacaaattattaaggatggtcgagctttatccaaatgattttaaggacgtgtcggaagagttggtgcgctatcaatttcggaattatc 153  Q
    |||||| | ||| |||||||||| |||||||  |||||||||||||||||||||   || |||||||||| |  | |||||   ||| |||  ||||||     
T  1016665 gcttttgatgtgaacaaattattgaggatggctgagctttatccaaatgattttgtagatgtgtcggaagtggagttgcgcagacaacttcataattatg 1016764  T
Q  154 ttagaaatgttcgaggtgatcccaattttacaaatttaaaaggacttttagacctttgtgcaaaacttgtaaaaacaaa 232  Q
    |||||||||||  |  |||||| || ||| |||| || ||||| ||||  || |||||||||| ||||||  |||||||    
T  1016765 ttagaaatgttaaatctgatccaaaattttcaaagttgaaagggctttcggatctttgtgcaatacttgtggaaacaaa 1016843  T

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Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 67 - 242
Target Start/End: Original strand, 14700750 - 14700925
Alignment:
Q  67 acaaattattaaggatggtcgagctttatccaaatgattttaaggacgtgtcggaagagttggtgcgctatcaatttcggaattatcttagaaatgttcg 166  Q
    |||| |||||||| ||| | |||||||||| ||||||||||| |||||||  ||||| | |||||| | || | |||| ||||||| |||||||||||||    
T  14700750 acaatttattaagaatgattgagctttatcaaaatgattttatggacgtgctggaagtggtggtgcaccattagtttcagaattatgttagaaatgttcg 14700849  T
Q  167 aggtgatcccaattttacaaatttaaaaggacttttagacctttgtgcaaaacttgtaaaaacaaacaagagcact 242  Q
    |||||  | |||||||||||| || |||||||||| |||||||||||||||  ||||||||| ||||||| |||||    
T  14700850 aggtggcctcaattttacaaagttgaaaggactttcagacctttgtgcaaagtttgtaaaaataaacaagtgcact 14700925  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 5429738 - 5429670
Alignment:
Q  164 tcgaggtgatcccaattttacaaatttaaaaggacttttagacctttgtgcaaaacttgtaaaaacaaa 232  Q
    ||||||||||| |||||||| ||| || |||||||||||||  ||||||||||| ||||| ||||||||    
T  5429738 tcgaggtgatctcaattttaaaaagttgaaaggacttttagttctttgtgcaaagcttgtgaaaacaaa 5429670  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 236
Target Start/End: Original strand, 27016941 - 27017090
Alignment:
Q  87 gagctttatccaaatgattttaaggacgtgtcggaagagttggtgcgctatcaatttcggaattatcttagaaatgttcgaggtgatcccaattttacaa 186  Q
    |||||||| ||||| || |||||||||||| || ||| | |||| ||| ||||| ||| ||||||| ||| ||||||| |||||||  |||||||| |||    
T  27016941 gagctttacccaaaagagtttaaggacgtggcgaaagcggtggtacgccatcaacttcagaattatgttaaaaatgtttgaggtgactccaattttgcaa 27017040  T
Q  187 atttaaaaggacttttagacctttgtgcaaaacttgtaaaaacaaacaag 236  Q
    |||| |||||||||| |||| |||||||||| ||||  ||||||||||||    
T  27017041 atttgaaaggactttcagacatttgtgcaaagcttgggaaaacaaacaag 27017090  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 50722957 - 50723018
Alignment:
Q  45 tcatttgtagcttttaacgtggacaaattattaaggatggtcgagctttatccaaatgattt 106  Q
    ||||||||||||||| | ||  |||||||||| |||||| ||||| ||||||||||||||||    
T  50722957 tcatttgtagcttttgatgtaaacaaattattgaggatgatcgagttttatccaaatgattt 50723018  T

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Target: scaffold0381 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 236
Target Start/End: Complemental strand, 2843 - 2692
Alignment:
Q  87 gagctttatccaaatgattttaaggacgtgtcggaagagttggtgcgctatcaatttcggaattatctt-agaaatgttc-gaggtgatcccaattttac 184  Q
    |||||||| ||||| || |||||||||||| || ||| | |||| ||| ||||| ||| ||||||| || | |||||||  |||||||  |||||||| |    
T  2843 gagctttacccaaaagagtttaaggacgtggcgaaagcggtggtacgccatcaacttcagaattatgtttaaaaatgttttgaggtgactccaattttgc 2744  T
Q  185 aaatttaaaaggacttttagacctttgtgcaaaacttgtaaaaacaaacaag 236  Q
    |||||| |||||||||| |||| |||||||||| ||||  ||||||||||||    
T  2743 aaatttgaaaggactttcagacatttgtgcaaagcttgggaaaacaaacaag 2692  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 6802404 - 6802524
Alignment:
Q  45 tcatttgtagcttttaacgtggacaaattattaaggatggtcgagctttatccaaatgattttaaggacgtgtcggaagagttggtgcgctatcaatttc 144  Q
    ||||||| | ||||| | ||| ||||||||||||||||||| ||  ||||| |||||||||||| ||| ||||| |||| | || | ||| ||||| ||     
T  6802404 tcatttgcaacttttgatgtgaacaaattattaaggatggttgacttttattcaaatgattttatggatgtgtcagaagtggtgttacgccatcaactta 6802503  T
Q  145 ggaattatcttagaaatgttc 165  Q
    |||||||| ||| ||||||||    
T  6802504 ggaattatgttataaatgttc 6802524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 44873748 - 44873685
Alignment:
Q  45 tcatttgtagcttttaacgtggacaaattattaaggatggtcgagctttatccaaatgatttta 108  Q
    ||||||| ||||||| | ||| |||||||||| | |||||| ||| ||||||||||||||||||    
T  44873748 tcatttgcagcttttgatgtgaacaaattattgaagatggttgagttttatccaaatgatttta 44873685  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 2148843 - 2148781
Alignment:
Q  45 tcatttgtagcttttaacgtggacaaattattaaggatggtcgagctttatccaaatgatttt 107  Q
    ||||||||| ||||| | ||| | |||||||| |||||| |||| ||||||||||||||||||    
T  2148843 tcatttgtaacttttgatgtgaataaattattgaggatgatcgaactttatccaaatgatttt 2148781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 45485855 - 45486033
Alignment:
Q  54 gcttttaacgtggacaaattattaaggatggtcgagctttatccaaatgattttaaggacgtgtcggaagagttggtgcgctatcaatttcggaattatc 153  Q
    |||||| | ||| |||||||||| |||||||  |||||||||||||||||||||   || |||||||||| |  | |||||   ||| |||  ||||||     
T  45485855 gcttttgatgtgaacaaattattgaggatggctgagctttatccaaatgattttgtagatgtgtcggaagtggagttgcgcagacaacttcataattatg 45485954  T
Q  154 ttagaaatgttcgaggtgatcccaattttacaaatttaaaaggacttttagacctttgtgcaaaacttgtaaaaacaaa 232  Q
    |||||||||||  |  |||||| || ||| |||| || ||||| ||||  || |||||||||| ||||||  |||||||    
T  45485955 ttagaaatgttaaatctgatccaaaatttgcaaagttgaaagggctttcggatctttgtgcaatacttgtggaaacaaa 45486033  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 43265594 - 43265772
Alignment:
Q  54 gcttttaacgtggacaaattattaaggatggtcgagctttatccaaatgattttaaggacgtgtcggaagagttggtgcgctatcaatttcggaattatc 153  Q
    |||||| | ||| ||||||||||||||||||  |||||||||||||||||||||   || |||||||||| |  | |||||   ||| |||  ||||||     
T  43265594 gcttttgatgtgaacaaattattaaggatggctgagctttatccaaatgattttgtagatgtgtcggaagtggagttgcgcagacaacttcaaaattatg 43265693  T
Q  154 ttagaaatgttcgaggtgatcccaattttacaaatttaaaaggacttttagacctttgtgcaaaacttgtaaaaacaaa 232  Q
    |||||||||||  |  |||||| || ||| |||| || ||||| ||||  || |||||||||| ||||||  |||||||    
T  43265694 ttagaaatgttaaatctgatccaaaatttgcaaagttgaaagggctttcggatctttgtgcaatacttgtggaaacaaa 43265772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 2945060 - 2945116
Alignment:
Q  67 acaaattattaaggatggtcgagctttatccaaatgattttaaggacgtgtcggaag 123  Q
    |||||||||| |||||| ||||| ||||||||||||||||||  || ||||||||||    
T  2945060 acaaattattgaggatgatcgagttttatccaaatgattttatagatgtgtcggaag 2945116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 33941280 - 33941344
Alignment:
Q  44 atcatttgtagcttttaacgtggacaaattattaaggatggtcgagctttatccaaatgatttta 108  Q
    |||||||| ||||||| | ||| |||||||||| || |||| |||| |||| |||||||||||||    
T  33941280 atcatttgcagcttttgatgtgaacaaattattgagaatgggcgagatttacccaaatgatttta 33941344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 232
Target Start/End: Complemental strand, 24902134 - 24901956
Alignment:
Q  54 gcttttaacgtggacaaattattaaggatggtcgagctttatccaaatgattttaaggacgtgtcggaagagttggtgcgctatcaatttcggaattatc 153  Q
    |||||| | ||| |||||||||| |||||||  |||||||||||||||||||||   || |||||||||| |  | |||||   ||| ||| |||||||     
T  24902134 gcttttgatgtgaacaaattattgaggatggctgagctttatccaaatgattttgtagatgtgtcggaagtggagttgcgcagacaacttcagaattatg 24902035  T
Q  154 ttagaaatgttcgaggtgatcccaattttacaaatttaaaaggacttttagacctttgtgcaaaacttgtaaaaacaaa 232  Q
    |||||||||||  |  |||||| || ||| |||| || ||||| ||||  || |||||||||| ||||||  |||||||    
T  24902034 ttagaaatgttaaatctgatccaaaatttgcaaagttgaaagggctttcggatctttgtgcaatacttgtggaaacaaa 24901956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 232
Target Start/End: Complemental strand, 18817365 - 18817187
Alignment:
Q  54 gcttttaacgtggacaaattattaaggatggtcgagctttatccaaatgattttaaggacgtgtcggaagagttggtgcgctatcaatttcggaattatc 153  Q
    |||||| | ||| |||||||||| |||||||  |||||||||||||||||||||   || |||||||||| |  | |||||   ||| |||  ||||||     
T  18817365 gcttttgatgtgaacaaattattgaggatggctgagctttatccaaatgattttgtagatgtgtcggaagtggagttgcgcagacaacttcataattatg 18817266  T
Q  154 ttagaaatgttcgaggtgatcccaattttacaaatttaaaaggacttttagacctttgtgcaaaacttgtaaaaacaaa 232  Q
    |||||||||||  |  |||||| || ||| |||| || ||||| ||||  || |||||||||| ||||||  |||||||    
T  18817265 ttagaaatgttaaatctgatccaaaatttgcaaagttgaaagggctttcggatctttgtgcaatacttgtggaaacaaa 18817187  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 2112304 - 2112382
Alignment:
Q  147 aattatcttagaaatgttcgaggtgatcccaattttacaaatttaaa--aggacttttagacctttgtgcaaaacttgt 223  Q
    |||||| |||||| |||| ||||||||||||||||| |||| |||||  |||||||| | ||||||||| ||| |||||    
T  2112304 aattattttagaagtgtttgaggtgatcccaattttgcaaagttaaaagaggactttcaaacctttgtgaaaagcttgt 2112382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 26285476 - 26285539
Alignment:
Q  45 tcatttgtagcttttaacgtggacaaattattaaggatggtcgagctttatccaaatgatttta 108  Q
    ||||||| || |||| | ||| |||||||||| |||||||| ||| ||||||||||||||||||    
T  26285476 tcatttgcagtttttgatgtgaacaaattattgaggatggttgagttttatccaaatgatttta 26285539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 232
Target Start/End: Complemental strand, 26903603 - 26903425
Alignment:
Q  54 gcttttaacgtggacaaattattaaggatggtcgagctttatccaaatgattttaaggacgtgtcggaagagttggtgcgctatcaatttcggaattatc 153  Q
    |||||| | ||| |||||||||| |||||||  |||||||||||||||||||||   || |||||||||| |  | |||||   ||| |||  ||||||     
T  26903603 gcttttgatgtgaacaaattattgaggatggctgagctttatccaaatgattttgtagatgtgtcggaagtggagttgcgcagacaacttcataattatg 26903504  T
Q  154 ttagaaatgttcgaggtgatcccaattttacaaatttaaaaggacttttagacctttgtgcaaaacttgtaaaaacaaa 232  Q
    |||||||||||  |  |||||| || ||| |||| || ||||| ||||  || |||||||||| ||||||  |||||||    
T  26903503 ttagaaatgttaaatctgatccaaaatttgcaaagttgaaagggctttcggatctttgtgcaatacttgtggaaacaaa 26903425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 36617437 - 36617615
Alignment:
Q  54 gcttttaacgtggacaaattattaaggatggtcgagctttatccaaatgattttaaggacgtgtcggaagagttggtgcgctatcaatttcggaattatc 153  Q
    |||||| | ||| |||||||||| |||||||  |||||||||||||||||||||   || |||||||||| |  | |||||   ||| |||  ||||||     
T  36617437 gcttttgatgtgaacaaattattgaggatggctgagctttatccaaatgattttgtagatgtgtcggaagtggagttgcgcagacaacttcataattatg 36617536  T
Q  154 ttagaaatgttcgaggtgatcccaattttacaaatttaaaaggacttttagacctttgtgcaaaacttgtaaaaacaaa 232  Q
    |||||||||||  |  |||||| || ||| |||| || ||||| ||||  || |||||||||| ||||||  |||||||    
T  36617537 ttagaaatgttaaatctgatccaaaatttgcaaagttgaaagggctttcggatctttgtgcaatacttgtggaaacaaa 36617615  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 4076019 - 4075966
Alignment:
Q  54 gcttttaacgtggacaaattattaaggatggtcgagctttatccaaatgatttt 107  Q
    |||||| | ||| |||||||||| |||||||  |||||||||||||||||||||    
T  4076019 gcttttgatgtgaacaaattattgaggatggctgagctttatccaaatgatttt 4075966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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