View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_54 (Length: 255)
Name: NF1911_low_54
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 4074245 - 4074500
Alignment:
| Q |
1 |
taaactttcttatataataattcaaaatataatttggggtccaaattgttcatgaaatacaatattaaaattgttgtcttctactttacattcagttttc |
100 |
Q |
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| T |
4074245 |
taaactttcttatataataattcaaaatataatttggggtccaaattgttcatgaaatacaatatcaaaattgttgtcttctactttacattcagttttc |
4074344 |
T |
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| Q |
101 |
ctagatgtgatagttggtg-aaaaaagggagcatctatgcttctaaaaacttcaactttaggtgcttc----------caggaggtaaattaagtctagc |
189 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4074345 |
ctagatgtgatagttggtgaaaaaaagggagcatctatgcttctaaaaacttcaactttaggtgcttcaaagtttggtcaggaggtaaattaagtctagc |
4074444 |
T |
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| Q |
190 |
aaatgattgttccagttgggatatgaacttctactatcgatttgtcaatctctgtg |
245 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4074445 |
aaatgattgttccagttgggatatgaacttctcctatcgatttgtcaatctctgtg |
4074500 |
T |
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