View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_55 (Length: 251)
Name: NF1911_low_55
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_55 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold1681 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 46360832 - 46360599
Alignment:
| Q |
20 |
gaaattggttgtctttcatgatagtttaaaaactaaattgatgtattttcattagtttatagacattctaagagaatgatatttatgcagcaaattaact |
119 |
Q |
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| T |
46360832 |
gaaattggttgtctttcatgatagtttaaaaactaaattaatgtattttcattagtttatagacattctaagagaatgatatttatggagcaaattaact |
46360733 |
T |
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| Q |
120 |
ccttattcattaattagtttacatgtgattaattattaataaattaagggttttgataacgagtgttctcagacactc--taagcattataaattaggta |
217 |
Q |
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| T |
46360732 |
ccttattcattaattagtttacatgtgattaattattaatagattaagggttttgataacgagtgttctcagacactctttaagcattataaattaggta |
46360633 |
T |
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| Q |
218 |
attactatttaaaaaagacaaatattcacaatgc |
251 |
Q |
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| T |
46360632 |
attactatttaaaaaagacaaatattcacaatgc |
46360599 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 5070891 - 5070857
Alignment:
| Q |
33 |
tttcatgatagtttaaaaactaaattgatgtattt |
67 |
Q |
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| T |
5070891 |
tttcatgatagtttaaaaactaaattgatgcattt |
5070857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1681 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1681
Description:
Target: scaffold1681; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 642 - 713
Alignment:
| Q |
163 |
ttaagggttttgataacgagtgttctcagacactc--taagcattataaattaggtaattactatttaaaaa |
232 |
Q |
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| T |
642 |
ttaagggttttgttaacgagtgctcccagacactctttaagcattctaaaataagtaattagtgtttaaaaa |
713 |
T |
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