View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_63 (Length: 242)
Name: NF1911_low_63
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 45969012 - 45968798
Alignment:
| Q |
17 |
agttgcaaggtgtgaaggagaaagttcttgacaatctcatgttctcctttaagcaagaaagcaagagcagaagggacgaaatctcgaataaagacctgat |
116 |
Q |
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| T |
45969012 |
agttgcaaggtgtgaaggagaaagttcttgacaatctcatgttctcctttaagcaagaaagcaagagcagaagggacgaaatctcgaataaagacctgat |
45968913 |
T |
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| Q |
117 |
cataattcaagggtgaccccgaatcatcatttgccgcaacagttccaacaggtgtatcacaatatgtaacaagcgctttctgcaataacttccatgcatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45968912 |
cataattcaagggtgaccccgaatcatcatttgccgcaacagttccaacaggtgtatcacaatatgtaacaagcgctttctgcaataacttccatgcatc |
45968813 |
T |
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| Q |
217 |
tttttccacctctgt |
231 |
Q |
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||| ||||| ||||| |
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| T |
45968812 |
tttctccacatctgt |
45968798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 37654886 - 37654993
Alignment:
| Q |
19 |
ttgcaaggtgtgaaggagaaagttcttgacaatctcatgttctcctttaagcaagaaagcaagagcagaagggacgaaatctcgaataaagacctgatca |
118 |
Q |
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||||||||| ||||| ||||||| ||| ||||||||| || ||||||||||| ||||||||||| || || || ||||| |||||||| || |||||| |
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| T |
37654886 |
ttgcaaggtatgaagaagaaagtacttaacaatctcagtatcccctttaagcaaaaaagcaagagccgacggaacaaaatcccgaataaacacttgatca |
37654985 |
T |
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| Q |
119 |
taattcaa |
126 |
Q |
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|||||||| |
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| T |
37654986 |
taattcaa |
37654993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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