View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_65 (Length: 240)
Name: NF1911_low_65
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 28946675 - 28946467
Alignment:
| Q |
13 |
aaagggaatagtggtaaaagtgttaaatttagggttccggtacagagtattgatgaagatggaatgttgaatggtgatgatgaagatggaattgtggatc |
112 |
Q |
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| T |
28946675 |
aaagggaatagtggtaaaagtgttaaatttagggttccggtacagagtattgatgaagatggaatgttgaatggtgatgatgaagatggaattgtggatc |
28946576 |
T |
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| Q |
113 |
gacctgaaccaacgaaggttacgaggaatacgcggagcaggaaaattgttactgattctactaatgtgaatttggatcctgtagaaccgaagaatgctag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28946575 |
gacctgaaccaacgaaggttacgaggaatacgcggagcaggaaaattgttactgattctactaatgtgaatttggatcctgtagaaccgaagaatgctag |
28946476 |
T |
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| Q |
213 |
ggccacgag |
221 |
Q |
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||||||||| |
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| T |
28946475 |
ggccacgag |
28946467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 34824038 - 34823830
Alignment:
| Q |
13 |
aaagggaatagtggtaaaagtgttaaatttagggttccggtacagagtattgatgaagatggaatgttgaatggtgatgatgaagatggaattgtggatc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34824038 |
aaagggaatagtggtaaaagtgttaaatttagggttccggtacagagtattgatgaagatggaatgttgaatggtgatgatgaagatggaattgtggatc |
34823939 |
T |
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| Q |
113 |
gacctgaaccaacgaaggttacgaggaatacgcggagcaggaaaattgttactgattctactaatgtgaatttggatcctgtagaaccgaagaatgctag |
212 |
Q |
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| T |
34823938 |
gacctgaaccaaagaaggttacgaggaataagcggagcaggaaaattgttactgattctactaatgtgaatttggatactgtagaaccgaagaatgcaag |
34823839 |
T |
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| Q |
213 |
ggccacgag |
221 |
Q |
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| T |
34823838 |
ggccacgag |
34823830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 42232052 - 42232179
Alignment:
| Q |
65 |
atgaagatggaatgttgaatggtgatgatgaa---gatggaattgtggatcgacctgaaccaacgaaggttacgaggaatacgcggagcaggaaaattgt |
161 |
Q |
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|||||||||||||||||||||||||| ||||| | ||||||||| ||||||||| |||| | |||||||||||||||||||||||||||||| |||| |
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| T |
42232052 |
atgaagatggaatgttgaatggtgattatgaatctggtggaattgtagatcgacctcaaccgatgaaggttacgaggaatacgcggagcaggaacgttgt |
42232151 |
T |
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| Q |
162 |
tactgattctactaatgtgaatttggat |
189 |
Q |
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| T |
42232152 |
ttctgattctactcatgtgtatttggat |
42232179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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