View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_68 (Length: 239)
Name: NF1911_low_68
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 12156260 - 12156039
Alignment:
| Q |
1 |
cacatactagttatcatataatttcatggtaagttcagtaatatgaggagtaataacatcgaaatnnnnnnnttgattccaccatgggtaagttccagaa |
100 |
Q |
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| T |
12156260 |
cacatactagttatcatataatttcatggtaagttcagcaatatgaggagtaataacatcgaaataaaaaaattgattccaccatgggtaagttccagaa |
12156161 |
T |
|
| Q |
101 |
actgttattgacaataataatcgttagtaagtgataattgaatgctacatgattgcaatgatatttaatatgttaggatgcgagtttaaactcatagttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12156160 |
actgttattgacaataataatcgttagtaagtgataattgaatgctacatgattgcaatgatatttaatatgttaggatgcgagtttaaactcatagttc |
12156061 |
T |
|
| Q |
201 |
tcaaatccagtgtgtgtgagtt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
12156060 |
tcaaatccagtgtgtgtgagtt |
12156039 |
T |
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