View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1911_low_71 (Length: 237)

Name: NF1911_low_71
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1911_low_71
NF1911_low_71
[»] chr8 (3 HSPs)
chr8 (10-79)||(13331215-13331284)
chr8 (1-79)||(39660881-39660959)
chr8 (1-78)||(5827153-5827230)
[»] chr2 (3 HSPs)
chr2 (10-78)||(38316973-38317041)
chr2 (1-76)||(9748512-9748587)
chr2 (1-78)||(30994638-30994715)
[»] scaffold0637 (1 HSPs)
scaffold0637 (1-78)||(299-376)
[»] scaffold0401 (1 HSPs)
scaffold0401 (1-78)||(3385-3462)
[»] chr1 (5 HSPs)
chr1 (88-185)||(44142265-44142361)
chr1 (1-78)||(18391525-18391602)
chr1 (1-79)||(34553600-34553678)
chr1 (10-71)||(6194971-6195033)
chr1 (78-184)||(44129628-44129730)
[»] chr6 (8 HSPs)
chr6 (10-78)||(33680117-33680185)
chr6 (1-78)||(15579802-15579879)
chr6 (1-78)||(25328038-25328115)
chr6 (1-78)||(26160573-26160650)
chr6 (3-78)||(12745947-12746023)
chr6 (1-78)||(28895392-28895470)
chr6 (1-60)||(26161169-26161228)
chr6 (12-79)||(35028013-35028081)
[»] chr7 (5 HSPs)
chr7 (1-79)||(43548343-43548421)
chr7 (1-78)||(3542030-3542107)
chr7 (1-78)||(26152282-26152359)
chr7 (1-78)||(38430515-38430592)
chr7 (1-78)||(6963417-6963494)
[»] scaffold0083 (2 HSPs)
scaffold0083 (1-78)||(52251-52328)
scaffold0083 (1-78)||(28448-28525)
[»] chr5 (8 HSPs)
chr5 (1-77)||(26337113-26337189)
chr5 (1-78)||(9689892-9689969)
chr5 (1-78)||(33321834-33321911)
chr5 (1-78)||(40183080-40183157)
chr5 (1-78)||(33920272-33920350)
chr5 (1-78)||(2500927-2501003)
chr5 (1-78)||(35433388-35433464)
chr5 (100-164)||(1506458-1506522)
[»] chr4 (2 HSPs)
chr4 (1-78)||(56090226-56090303)
chr4 (1-79)||(15850319-15850397)
[»] scaffold0273 (1 HSPs)
scaffold0273 (3-78)||(20599-20674)
[»] chr3 (2 HSPs)
chr3 (1-78)||(18550796-18550874)
chr3 (1-73)||(36037972-36038044)


Alignment Details
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 13331284 - 13331215
Alignment:
Q  10 ttgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatcat 79  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13331284 ttgactctcaaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatcat 13331215  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 39660881 - 39660959
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatcat 79  Q
    |||||| | ||||||||| |||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||    
T  39660881 tacaagtatttgactctcaaaacattacaaaaacgacgcaattatgactaaaaaactagtgttgacgtactgtcatcat 39660959  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 5827230 - 5827153
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| ||||||||| ||||||||||||||  || |||||||||||||||||||||| |||||||||| ||||||    
T  5827230 tacaagcatttgactctcaaaacattacaaaaacaacgcaaatatgactaaaaaactagttttgacgtactttcatca 5827153  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 38316973 - 38317041
Alignment:
Q  10 ttgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38316973 ttgactctcaaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 38317041  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9748512 - 9748587
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcat 76  Q
    |||||||| |||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9748512 tacaagcatttgaatctcaaaacattacaaaaacgacacaaatatgactaaaaaactagtgttgacgtactgtcat 9748587  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 30994638 - 30994715
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  30994638 tacaagcatttgactctcaaaacattacaaaaaggacacaaatatgactaaaaaactagtaatgacgtactgtcatca 30994715  T

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Target: scaffold0637 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 376 - 299
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||| ||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  376 tacatgcatttgactctcaaaacattacaaaaaggacacaaatatgactaaaaaactagtgttgacgtactgtcatca 299  T

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Target: scaffold0401 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 3462 - 3385
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| ||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  3462 tacaagcatttgactctcaaaacattacaaaaacgacgcaaatatgactaaaaaactagtgttgacgtactgtcatca 3385  T

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Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 44142265 - 44142361
Alignment:
Q  88 aaattgggttaacatataaaagacaataaattagatgattgttacaagtgaattatattttaaaatgtagtaatgtaatgtgtgcactcttctaactc 185  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||| |||||    
T  44142265 aaattgtgttgacatataaa-gacaataaattagatgattgttacagatgaattatattttaaaatgtagtaatgcaatttgtgcactcttcgaactc 44142361  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 18391602 - 18391525
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||  ||||||| ||||||||    
T  18391602 tacaagcatttgactctcaaaacattacaaaaaagacacaaatatgactaaaaaactagtaatgacgtattgtcatca 18391525  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 34553600 - 34553678
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatcat 79  Q
    |||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |  ||||||||  |||||||    
T  34553600 tacaagcatttgactctcaaaacattacaaaaaggacacaaatatgactaaaaaactaataatgacgtacgatcatcat 34553678  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 6195033 - 6194971
Alignment:
Q  10 ttgactctctaaacattacaaaaatgacacaaatatgact-aaaaaactagtgttgacgtact 71  Q
    ||||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  6195033 ttgactctcaaaacattacaaaaatgacaaaaatataactaaaaaaactagtgttgacgtact 6194971  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 44129628 - 44129730
Alignment:
Q  78 attaaggattaaattgggttaacatataaaagacaataaattagatgattgttacaagtgaattatattttaaaatgt--agtaatgtaatgtgtgcact 175  Q
    |||||| | ||||||| ||||||||||||| |||  |||||| ||||| |||||||||||||      ||||||| ||   |||||||||||||||||||    
T  44129628 attaagaagtaaattgtgttaacatataaatgactgtaaattggatgactgttacaagtgaa------tttaaaaagtcctgtaatgtaatgtgtgcact 44129721  T
Q  176 cttctaact 184  Q
    |||||||||    
T  44129722 cttctaact 44129730  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 33680117 - 33680185
Alignment:
Q  10 ttgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33680117 ttgactctcaaaacattacaaaaaggacacaaatatgactaaaaaactagtgttgacgtactgtcatca 33680185  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 15579802 - 15579879
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| ||||||||| |||||||||||||| |||| |||||| ||||||||||||||||||| ||||||||||||    
T  15579802 tacaagcatttgactctcaaaacattacaaaaaggacaaaaatataactaaaaaactagtgttgatgtactgtcatca 15579879  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 25328115 - 25328038
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| ||||||||| |||||||||||||  | ||||||||||||||||||||||||  ||||||||||||||||    
T  25328115 tacaagcatttgactctcaaaacattacaaaagggtcacaaatatgactaaaaaactagtaatgacgtactgtcatca 25328038  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 26160650 - 26160573
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| ||||||||| |||||||||||||  | ||||||||||||||||||||||||  ||||||||||||||||    
T  26160650 tacaagcatttgactctcaaaacattacaaaagggtcacaaatatgactaaaaaactagtaatgacgtactgtcatca 26160573  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 12746023 - 12745947
Alignment:
Q  3 caagcaattgactctctaaacattacaaaaatgacacaaatatgactaa-aaaactagtgttgacgtactgtcatca 78  Q
    |||||| ||||||||| |||||||||||||| ||||||||||||||||| |||||||||  ||||||||| ||||||    
T  12746023 caagcatttgactctcaaaacattacaaaaaggacacaaatatgactaaaaaaactagtaatgacgtactatcatca 12745947  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 28895392 - 28895470
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatg--acacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||||||  | ||||||||||||||    
T  28895392 tacaagcatttgactctcaaaacattacaaaaatgacacacaaatatgactaaaaaactagtaat-acgtactgtcatca 28895470  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26161169 - 26161228
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagt 60  Q
    |||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  26161169 tacaagcatttgactctcaaaacattacaaaagggacacaaatatgactaaaaaactagt 26161228  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 35028013 - 35028081
Alignment:
Q  12 gactctctaaacattacaaaaatgacacaaatatgact-aaaaaactagtgttgacgtactgtcatcat 79  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||||  ||| |||||||||||||    
T  35028013 gactctcaaaacattacaaaaaagacacaaatatgactaaaaaaactagtaatgatgtactgtcatcat 35028081  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 43548421 - 43548343
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatcat 79  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||    
T  43548421 tacaagcatttgactctcaaaacattacaaaaaggacacaaatatgactaaaaaactagtaatgacgtactgtcatcat 43548343  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 3542030 - 3542107
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    ||||| || ||||||||| |||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||    
T  3542030 tacaaacatttgactctcaaaacattacaaaaacgacgcaaatatgactaaaaaactagcgttgacgtactgtcatca 3542107  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 26152359 - 26152282
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    ||||| || ||||||||| |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  26152359 tacaaacatttgactctcaaaacattacaaaaaggacacaaatatgactaaaaaactagtaatgacgtactgtcatca 26152282  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 38430592 - 38430515
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| ||||||||| ||| |||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||    
T  38430592 tacaagcatttgactctcaaaatattacaaaaacgacgcaaatatgactaaaaaactagtgtttacgtactgtcatca 38430515  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 6963494 - 6963417
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||  ||  ||||||||||||    
T  6963494 tacaagcatttgactctcaaaacattacaaaaaggacacaaatatgactaaaaaactagtaatggtgtactgtcatca 6963417  T

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Target: scaffold0083 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 52328 - 52251
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  52328 tacaagcatttgactctcaaaacattacaaaaaggacacaaatatgactaaaaaactagtaatgacgtactgtcatca 52251  T

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Target: scaffold0083; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 28525 - 28448
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| |||| |||| |||||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||||    
T  28525 tacaagcatttgaatctcaaaacattacaaaaacgacgcaaatatgactaaaaacctagtgttgacatactgtcatca 28448  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 26337189 - 26337113
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatc 77  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||    
T  26337189 tacaagcatttgactctcaaaacattacaaaaaggacacaaatatgactaaaaaactagtaatgacgtactgtcatc 26337113  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 9689969 - 9689892
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||   ||||||||||||||||    
T  9689969 tacaagcatttgactctcaaaacattacaaaaaggacacaaatatgactaaaaaactagcaatgacgtactgtcatca 9689892  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 33321834 - 33321911
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||  ||||||| ||||||||    
T  33321834 tacaagcatttgactctcaaaacattacaaaaaggacacaaatatgactaaaaaactagtaatgacgtagtgtcatca 33321911  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 40183080 - 40183157
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| ||||  ||||||||||||||||    
T  40183080 tacaagcatttgactctcaaaacattacaaaaaggacacaaatatgactaaaaaattagtaatgacgtactgtcatca 40183157  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 33920350 - 33920272
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaa-aaaactagtgttgacgtactgtcatca 78  Q
    |||||||| ||||||||| |||||||||||||| |||||| |||||||||| |||||||||  ||||||||||||||||    
T  33920350 tacaagcatttgactctcaaaacattacaaaaaggacacatatatgactaagaaaactagtaatgacgtactgtcatca 33920272  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 2500927 - 2501003
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| ||||||||| |||||||||||||| ||| ||||||||||| ||||| ||||||| ||||||||||||||    
T  2500927 tacaagcatttgactctcaaaacattacaaaaacgacgcaaatatgact-aaaaattagtgttaacgtactgtcatca 2501003  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 35433388 - 35433464
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||| ||| ||||||||| |||||||| |||||  | |||||||||||||| ||| ||||||||||||||||||||||    
T  35433388 tacacgcatttgactctcaaaacattataaaaaatatacaaatatgactaataaa-tagtgttgacgtactgtcatca 35433464  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 1506458 - 1506522
Alignment:
Q  100 catataaaagacaataaattagatgattgttacaagtgaattatattttaaaatgtagtaatgta 164  Q
    |||||||||||||| || ||||||||||| ||||||| ||||| ||||||| ||| |||||||||    
T  1506458 catataaaagacaacaagttagatgattgatacaagtaaattacattttaatatgcagtaatgta 1506522  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 56090226 - 56090303
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||  ||||||||||||||||    
T  56090226 tacaagcatttgactctcaaaacattacaaaaaggacacaaatataactaaaaaactagtaatgacgtactgtcatca 56090303  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 15850397 - 15850319
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatcat 79  Q
    |||||||| ||||||||| ||| |||||||||| ||| ||||||||||| ||||| ||||| || ||||||||||||||    
T  15850397 tacaagcatttgactctcaaaatattacaaaaacgactcaaatatgacttaaaaattagtgctggcgtactgtcatcat 15850319  T

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Target: scaffold0273 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 20599 - 20674
Alignment:
Q  3 caagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgtcatca 78  Q
    |||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||  ||| ||||||||||||    
T  20599 caagcatttgactctcaaaacattacaaaaaggacacaaatatgactaaaaaactagtaatgatgtactgtcatca 20674  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 18550874 - 18550796
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgact-aaaaaactagtgttgacgtactgtcatca 78  Q
    |||||||| |||||| || ||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  18550874 tacaagcatttgactttcaaaatattacaaaaatgacacaaatatgagtaaaaaaactagtgttgacgtagtgtcatca 18550796  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36037972 - 36038044
Alignment:
Q  1 tacaagcaattgactctctaaacattacaaaaatgacacaaatatgactaaaaaactagtgttgacgtactgt 73  Q
    |||||||| ||||||||| ||||||| |||||  ||||||||||||||||||||||||||  |||||||||||    
T  36037972 tacaagcatttgactctcaaaacatttcaaaagggacacaaatatgactaaaaaactagtaatgacgtactgt 36038044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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