View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_73 (Length: 236)
Name: NF1911_low_73
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_73 |
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| [»] scaffold0690 (2 HSPs) |
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Alignment Details
Target: scaffold0690 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 183 - 381
Alignment:
| Q |
19 |
gaattggacttggaagttttcattcatacattaccgttttaaattaataattctcttgagattattctcacactagagataatacaaaatagaaaactgt |
118 |
Q |
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| T |
183 |
gaattggacttggaagttttcattcatacattaccgttttaaattaataattctcttgagattattctcacactagagataatacaaaatagaaaactgt |
282 |
T |
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| Q |
119 |
ctttctcaaggtcaaagtcatcatagcattgacttagactttgaagttttccttcatactttaccattttaaattaataatattcatatcatatagcat |
217 |
Q |
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| T |
283 |
ctttcttaaggtcaaagtcatcatagcattgacttggactttgaagttttccttcatactttaccattttaaattaataatattcatatcatatagcat |
381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 199
Target Start/End: Original strand, 159 - 233
Alignment:
| Q |
125 |
caaggtcaaagtcatcatagcattgacttagactttgaagttttccttcatactttaccattttaaattaataat |
199 |
Q |
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| T |
159 |
caaggtcaaagtcatcacaatattgaattggacttggaagttttcattcatacattaccgttttaaattaataat |
233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 15911925 - 15911724
Alignment:
| Q |
19 |
gaattggacttggaagttttcattcatacat---taccgttttaaattaataattctcttgagattattctcacactagagataatacaaaatagaaaac |
115 |
Q |
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| T |
15911925 |
gaattggacttggaagttttcattcatacataattaccgttttaaattaataattctcttgagattattctcacactagagataatacaaaatagaaaac |
15911826 |
T |
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| Q |
116 |
tgtctttctcaaggtcaaagtcatcatagcattgacttagactttgaagttttccttcatactttaccattttaaattaataatattcatatcatatagc |
215 |
Q |
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| T |
15911825 |
tgtctttcttaaggtcaaagtcatcatagcattgacttggactttgaagttttccttcatactttaccattttaaattaataatattcatatcatatagc |
15911726 |
T |
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| Q |
216 |
at |
217 |
Q |
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|| |
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| T |
15911725 |
at |
15911724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 9243964 - 9243911
Alignment:
| Q |
115 |
ctgtctttctcaaggtcaaagtcatcatagcattgacttagactttgaagtttt |
168 |
Q |
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| T |
9243964 |
ctgtctttctcagggtcaaactcatcatagcattgacctggacttggaaatttt |
9243911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 9336201 - 9336257
Alignment:
| Q |
112 |
aaactgtctttctcaaggtcaaagtcatcatagcattgacttagactttgaagtttt |
168 |
Q |
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| T |
9336201 |
aaactgtctttctaagggtcaaagtcattatagcattgacctggacttggaaatttt |
9336257 |
T |
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