View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1911_low_75 (Length: 236)

Name: NF1911_low_75
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1911_low_75
NF1911_low_75
[»] chr5 (23 HSPs)
chr5 (1-222)||(29899302-29899521)
chr5 (42-222)||(36452961-36453141)
chr5 (42-195)||(20094874-20095027)
chr5 (42-195)||(22952895-22953048)
chr5 (42-195)||(25531340-25531493)
chr5 (42-193)||(12389467-12389618)
chr5 (42-193)||(21693667-21693818)
chr5 (43-195)||(23578527-23578679)
chr5 (42-172)||(1803990-1804120)
chr5 (42-172)||(11940796-11940926)
chr5 (42-172)||(7792687-7792817)
chr5 (42-172)||(36372336-36372466)
chr5 (42-172)||(36996999-36997129)
chr5 (42-172)||(15781041-15781171)
chr5 (42-172)||(31524009-31524139)
chr5 (42-164)||(37583512-37583634)
chr5 (42-172)||(7256233-7256364)
chr5 (85-150)||(20382865-20382930)
chr5 (85-150)||(33839504-33839569)
chr5 (79-164)||(24063792-24063879)
chr5 (84-141)||(11807995-11808052)
chr5 (84-141)||(12175185-12175242)
chr5 (84-141)||(26083912-26083969)
[»] chr6 (16 HSPs)
chr6 (1-195)||(27069516-27069708)
chr6 (42-196)||(22774428-22774582)
chr6 (42-171)||(20454278-20454407)
chr6 (42-193)||(18947285-18947436)
chr6 (42-195)||(617418-617571)
chr6 (42-195)||(27516109-27516262)
chr6 (42-192)||(16818982-16819132)
chr6 (42-172)||(19718345-19718475)
chr6 (50-191)||(1547962-1548103)
chr6 (42-172)||(20042173-20042303)
chr6 (42-172)||(24144972-24145102)
chr6 (42-172)||(18439522-18439652)
chr6 (42-172)||(20052210-20052340)
chr6 (85-150)||(16585308-16585373)
chr6 (85-150)||(16610007-16610072)
chr6 (85-150)||(28309338-28309403)
[»] scaffold0799 (1 HSPs)
scaffold0799 (42-222)||(4830-5010)
[»] chr4 (14 HSPs)
chr4 (42-222)||(55791247-55791427)
chr4 (42-222)||(20559084-20559261)
chr4 (43-210)||(15573148-15573314)
chr4 (42-172)||(3383778-3383908)
chr4 (42-195)||(3830123-3830276)
chr4 (42-193)||(15894408-15894560)
chr4 (42-193)||(22710023-22710174)
chr4 (42-172)||(9189432-9189562)
chr4 (42-172)||(16722111-16722241)
chr4 (42-145)||(14895372-14895475)
chr4 (43-161)||(3363775-3363892)
chr4 (61-125)||(14923472-14923536)
chr4 (50-136)||(12615687-12615773)
chr4 (79-164)||(13729182-13729270)
[»] chr3 (23 HSPs)
chr3 (42-222)||(12554934-12555114)
chr3 (42-222)||(13106985-13107165)
chr3 (42-196)||(23283339-23283493)
chr3 (42-196)||(30091077-30091231)
chr3 (45-191)||(15625553-15625699)
chr3 (42-195)||(8810369-8810522)
chr3 (42-191)||(15531384-15531533)
chr3 (42-195)||(21613847-21614000)
chr3 (42-195)||(12474319-12474472)
chr3 (56-195)||(8610919-8611058)
chr3 (42-172)||(72847-72977)
chr3 (42-172)||(8622297-8622427)
chr3 (42-171)||(14882804-14882933)
chr3 (42-172)||(5947282-5947412)
chr3 (42-172)||(6200289-6200419)
chr3 (42-140)||(3682385-3682483)
chr3 (42-140)||(30018944-30019042)
chr3 (42-172)||(37257223-37257353)
chr3 (42-172)||(46383990-46384120)
chr3 (42-172)||(46394775-46394905)
chr3 (42-112)||(3409722-3409792)
chr3 (86-153)||(16149070-16149137)
chr3 (79-125)||(20446563-20446611)
[»] chr1 (9 HSPs)
chr1 (42-195)||(19373906-19374059)
chr1 (42-172)||(2337384-2337514)
chr1 (42-192)||(6199036-6199186)
chr1 (42-171)||(1960566-1960695)
chr1 (42-172)||(35074273-35074396)
chr1 (42-172)||(5625446-5625576)
chr1 (61-195)||(14815059-14815194)
chr1 (61-125)||(21454330-21454394)
chr1 (1-44)||(2337554-2337595)
[»] scaffold1767 (1 HSPs)
scaffold1767 (42-191)||(807-956)
[»] scaffold0132 (1 HSPs)
scaffold0132 (1-192)||(28570-28756)
[»] chr8 (7 HSPs)
chr8 (42-172)||(22158399-22158529)
chr8 (42-195)||(32004909-32005062)
chr8 (42-172)||(25854563-25854693)
chr8 (42-195)||(20732087-20732241)
chr8 (42-161)||(21477463-21477582)
chr8 (42-126)||(22090745-22090829)
chr8 (120-176)||(22088105-22088161)
[»] scaffold0114 (1 HSPs)
scaffold0114 (42-195)||(28935-29088)
[»] scaffold0721 (1 HSPs)
scaffold0721 (42-195)||(5138-5291)
[»] scaffold0029 (1 HSPs)
scaffold0029 (42-195)||(90617-90770)
[»] scaffold0019 (1 HSPs)
scaffold0019 (45-193)||(14827-14975)
[»] scaffold0306 (1 HSPs)
scaffold0306 (42-185)||(20339-20482)
[»] scaffold0582 (1 HSPs)
scaffold0582 (45-195)||(2519-2669)
[»] scaffold0004 (1 HSPs)
scaffold0004 (42-195)||(189552-189706)
[»] chr7 (20 HSPs)
chr7 (42-172)||(34134365-34134495)
chr7 (42-195)||(844455-844608)
chr7 (42-195)||(851631-851784)
chr7 (42-195)||(1209635-1209788)
chr7 (42-193)||(23880843-23880994)
chr7 (50-191)||(15768188-15768329)
chr7 (42-172)||(30366335-30366465)
chr7 (42-172)||(42632538-42632668)
chr7 (45-210)||(12589549-12589713)
chr7 (42-140)||(3425966-3426064)
chr7 (42-172)||(16389790-16389920)
chr7 (42-151)||(9472949-9473058)
chr7 (42-172)||(8816290-8816420)
chr7 (64-163)||(18158835-18158934)
chr7 (43-161)||(16267578-16267695)
chr7 (85-150)||(4942483-4942548)
chr7 (79-164)||(795110-795197)
chr7 (84-141)||(563759-563816)
chr7 (79-164)||(16283950-16284038)
chr7 (84-141)||(27970926-27970983)
[»] scaffold0243 (1 HSPs)
scaffold0243 (42-195)||(19522-19675)
[»] chr2 (7 HSPs)
chr2 (42-191)||(20276347-20276496)
chr2 (43-222)||(24695107-24695295)
chr2 (42-172)||(12387237-12387367)
chr2 (50-189)||(40388117-40388256)
chr2 (50-144)||(17878205-17878299)
chr2 (79-164)||(21752367-21752453)
chr2 (79-164)||(21757328-21757414)
[»] scaffold0081 (1 HSPs)
scaffold0081 (51-191)||(57641-57781)
[»] scaffold0068 (1 HSPs)
scaffold0068 (42-193)||(20092-20243)
[»] scaffold0503 (1 HSPs)
scaffold0503 (50-180)||(7833-7963)
[»] scaffold0357 (1 HSPs)
scaffold0357 (43-185)||(11464-11606)
[»] scaffold0551 (1 HSPs)
scaffold0551 (51-172)||(602-724)
[»] scaffold0932 (1 HSPs)
scaffold0932 (42-172)||(3978-4108)
[»] scaffold0125 (1 HSPs)
scaffold0125 (43-163)||(14331-14451)
[»] scaffold0014 (2 HSPs)
scaffold0014 (43-163)||(181464-181584)
scaffold0014 (45-172)||(2646-2763)
[»] scaffold0323 (2 HSPs)
scaffold0323 (101-192)||(5386-5477)
scaffold0323 (42-106)||(6577-6641)
[»] scaffold0138 (1 HSPs)
scaffold0138 (43-125)||(2793-2875)
[»] scaffold0202 (1 HSPs)
scaffold0202 (42-133)||(22658-22750)
[»] scaffold0031 (1 HSPs)
scaffold0031 (50-172)||(26648-26770)
[»] scaffold0009 (1 HSPs)
scaffold0009 (71-133)||(156028-156090)
[»] scaffold0605 (1 HSPs)
scaffold0605 (85-141)||(2764-2820)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29899302 - 29899521
Alignment:
Q  1 aaatggcgactccttccatacctatttttatcaacaatgggcttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccg 100  Q
    |||||||||||| ||||||||||  ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29899302 aaatggcgactctttccatacct--ttttatcaataatgggcttataccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccg 29899399  T
Q  101 agtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgcaagttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29899400 agtgtttgtactgcgatgtcagtccgcctcccatcttacctatcttgtctcgtctcatcgagtcacttgtcacataaagtttatacagtcatgcaagttg 29899499  T
Q  201 tacattcataacatttgtacat 222  Q
    ||||||||||||||||||||||    
T  29899500 tacattcataacatttgtacat 29899521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 42 - 222
Target Start/End: Original strand, 36452961 - 36453141
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||| ||||||| ||||||| |    
T  36452961 cttacaccgtcaacggctcgttttgttcacaataatatcatctccaatgaagtttgccgagtgcttgtgctgcgatatcagttcgcctccaatcttacat 36453060  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgcaagttgtacattcataacatttgtacat 222  Q
    ||| |||||||| |||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  36453061 gtcctgtctcgtttcatcgagtcacttgtcacatagagtttatatagtcatgcaagttgtacattcataacatttgtacat 36453141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 42 - 195
Target Start/End: Complemental strand, 20095027 - 20094874
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  20095027 cttacatcgtcaatggctcgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccacctcccatcttgcct 20094928  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    |||||||||||| |||||||||||||||||| ||| ||| |||| |||||||||    
T  20094927 gtcttgtctcgtttcatcgagtcacctgtcatatacagtctatatagtcatgca 20094874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 42 - 195
Target Start/End: Complemental strand, 22953048 - 22952895
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22953048 cttacaccgtcaacggctcgatttgttcacaaaagtatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 22952949  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    | ||||| |||  | |||||||||||||||| ||| ||| ||||||||||||||    
T  22952948 gccttgtttcggtttatcgagtcacctgtcatatacagtctatacagtcatgca 22952895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 25531340 - 25531493
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||  |||||||||||||||| ||||||||||||| ||||||| ||||||| |    
T  25531340 cttacaccgtcaacggctcgatttgttcacaatagtatcatcttcaaggatatttgccgagtgtttgtgctgcgatgtcagttcgcctccaatcttacat 25531439  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    |||||||||| | | |||||||||||||||||||||||||||||||||||||||    
T  25531440 gtcttgtctcattttatcgagtcacctgtcacataaagtttatacagtcatgca 25531493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 42 - 193
Target Start/End: Complemental strand, 12389618 - 12389467
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  12389618 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 12389519  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatg 193  Q
    |||||||||||  ||||||||||| ||| || |||  || ||||||||||||    
T  12389518 gtcttgtctcggttcatcgagtcatctggcatatacggtctatacagtcatg 12389467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 42 - 193
Target Start/End: Original strand, 21693667 - 21693818
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  21693667 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 21693766  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatg 193  Q
    |||||||||||  ||||||||||| ||| || |||  || ||||||||||||    
T  21693767 gtcttgtctcggttcatcgagtcatctggcatatacggtctatacagtcatg 21693818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 43 - 195
Target Start/End: Complemental strand, 23578679 - 23578527
Alignment:
Q  43 ttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctg 142  Q
    |||||| |||||||| | ||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23578679 ttacactgtcaacggattgatttgttcacaatagtaccatcaccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctg 23578580  T
Q  143 tcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    ||||||||| |  ||||||||||| || || |||  || |||||| |||||||    
T  23578579 tcttgtctcattccatcgagtcacatggcatatacggtctatacaatcatgca 23578527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 1803990 - 1804120
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||| | ||||||||||||||    
T  1803990 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtctgactcccatcttacct 1804089  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||  ||||||| |||| |||||    
T  1804090 gtcttgtctcggttcatcgattcacgtgtca 1804120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 11940926 - 11940796
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| ||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  11940926 cttacaccatcaacggttcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 11940827  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||  ||||||| |||| |||||    
T  11940826 gtcttgtctcggttcatcgattcacgtgtca 11940796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 7792687 - 7792817
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| ||||||||||| |||||||||||| | |||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  7792687 cttacaccatcaacggctcgatttgctcacaataataccatctccaaggagggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 7792786  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||  ||||||| |||| |||||    
T  7792787 gtcttgtctcggttcatcgactcacgtgtca 7792817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 36372466 - 36372336
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| ||| ||||| ||||| ||||||||||||||    
T  36372466 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgaatgtttgtaatgcaatgtcggtccgactcccatcttacct 36372367  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    ||||||||||   ||||||| |||| |||||    
T  36372366 gtcttgtctcagttcatcgattcacgtgtca 36372336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 36997129 - 36996999
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| ||| ||||| ||||| ||||||||||||||    
T  36997129 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgaatgtttgtaatgcaatgtcggtccgactcccatcttacct 36997030  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    ||||||||||   ||||||| |||| |||||    
T  36997029 gtcttgtctcagttcatcgattcacgtgtca 36996999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 15781171 - 15781041
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||| || |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | | | ||||| ||||| ||||||||||||||    
T  15781171 cttacgccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttggaatacaatgtcggtccgactcccatcttacct 15781072  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||  ||||||| |||| |||||    
T  15781071 gtcttgtctcggttcatcgattcacgtgtca 15781041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 31524009 - 31524139
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||  ||||||||||||||    
T  31524009 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccaactcccatcttacct 31524108  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
     |||||||||   ||||||| |||| |||||    
T  31524109 atcttgtctcagttcatcgattcacgtgtca 31524139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 164
Target Start/End: Original strand, 37583512 - 37583634
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||| ||||||||||| | |||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||     
T  37583512 cttataccgtcaacggtttgatttgttaacaataatgtcatctccaaggaagtttgccaagtgtttgtactgcgatgtcagtccgcctcccaccttacca 37583611  T
Q  142 gtcttgtctcgtctcatcgagtc 164  Q
     || ||||||||  |||||||||    
T  37583612 atcctgtctcgttccatcgagtc 37583634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 7256364 - 7256233
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgag-tgtttgtactgcgatgtcagtccgcctcccatcttacc 140  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||||| |||||||| |||||||| ||| ||||| ||||| |||||| | ||||    
T  7256364 cttacaccatcaacggctcgttttgctcacaataatatcatctccaaggaaggttgccgagttgtttgtaatgcaatgtcggtccgactcccaccctacc 7256265  T
Q  141 tgtcttgtctcgtctcatcgagtcacctgtca 172  Q
    ||||||||||||  ||||||| |||| |||||    
T  7256264 tgtcttgtctcggttcatcgattcacgtgtca 7256233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 20382865 - 20382930
Alignment:
Q  85 ccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtct 150  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||    
T  20382865 ccaatgaagattgtcgagtgtttgtactgcgatgtcagtccgccttccatcttacttgtctagtct 20382930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 33839569 - 33839504
Alignment:
Q  85 ccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtct 150  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||    
T  33839569 ccaatgaagattgtcgagtgtttgtactgcgatgtcagtccgccttccatcttacttgtctagtct 33839504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 24063879 - 24063792
Alignment:
Q  79 tcatctccaaggaagtttgccgagtgt-ttgtactgcgatgtcagtccgcctcccatcttacc-tgtcttgtctcgtctcatcgagtc 164  Q
    ||||||||||||||||||||| ||||| | |||||| ||||||||||| | | ||| ||||||  ||||||||| |||||||||||||    
T  24063879 tcatctccaaggaagtttgcctagtgtatagtactgtgatgtcagtccactttccaccttaccaagtcttgtcttgtctcatcgagtc 24063792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 11808052 - 11807995
Alignment:
Q  84 tccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||| |||| |||| |||||||||||||||||||||| ||  ||||| |||||||||    
T  11808052 tccaatgaagattgctgagtgtttgtactgcgatgtcattcaacctcctatcttacct 11807995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 12175242 - 12175185
Alignment:
Q  84 tccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||| |||| |||| |||||||||||||||||||||| ||  ||||| |||||||||    
T  12175242 tccaatgaagattgctgagtgtttgtactgcgatgtcattcaacctcctatcttacct 12175185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 26083969 - 26083912
Alignment:
Q  84 tccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||| |||| |||| |||||||||||||||||||||| ||  ||||| |||||||||    
T  26083969 tccaatgaagattgctgagtgtttgtactgcgatgtcattcaacctcctatcttacct 26083912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 27069708 - 27069516
Alignment:
Q  1 aaatggcgactccttccatacctatttttatcaacaatgggcttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccg 100  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27069708 aaatggcgacttcttccatacct--ttttatcaacaatgggcttacaccgtcaacggctcgatttgttcacaatagtatcatctccaaggaagtttgccg 27069611  T
Q  101 agtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| ||| ||| |||| |||||||||    
T  27069610 agtgtttgtactgcgatgtcagtcctcctcccatcttacctgtcttgtttcgtttcatcgagtcacctgtcatatacagtctatatagtcatgca 27069516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 22774582 - 22774428
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||| |||||||| | ||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22774582 cttacactgtcaacggattgatttgttcacaatagtatcatcaccaaggaaatttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 22774483  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgcaa 196  Q
    |||||||||||||||||| |||||| ||||| ||||||| |||||||||| ||||    
T  22774482 gtcttgtctcgtctcatcaagtcacatgtcatataaagtctatacagtcaagcaa 22774428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 42 - 171
Target Start/End: Complemental strand, 20454407 - 20454278
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20454407 cttacaccgtcaacggctcgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtactgcgatatcagtccgcctcccatcttacct 20454308  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtc 171  Q
    || ||||||||  ||||||||| |||||||    
T  20454307 gttttgtctcggttcatcgagttacctgtc 20454278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 42 - 193
Target Start/End: Complemental strand, 18947436 - 18947285
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||| |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| |||    
T  18947436 cttacatcgtcaatggcttgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtactgtgatgtcaatccacctcccatcttgcct 18947337  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatg 193  Q
    ||||||||||| ||||||||||||||||||| ||| ||| |||| |||||||    
T  18947336 gtcttgtctcgactcatcgagtcacctgtcatatacagtctatatagtcatg 18947285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 195
Target Start/End: Complemental strand, 617571 - 617418
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||| ||| ||||| ||||| |||||||||||| |    
T  617571 cttacaccatcaacggctcgatttgctcacaataatattatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacat 617472  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    ||||||||||| ||||||| ||||||||||| ||| ||||||||| ||||||||    
T  617471 gtcttgtctcggctcatcgggtcacctgtcatatacagtttatacggtcatgca 617418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 27516109 - 27516262
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||| ||| |||   ||||| ||||||||||||||    
T  27516109 cttacaccatcaacggctcgatttgctcacaataatattatctccaaggaaggttgccgagtgtttgtaatgcaatgctggtccgactcccatcttacct 27516208  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||| ||||||||    
T  27516209 gtcttgtctcggctcatcgagtcacctgtcatatacagtttatacggtcatgca 27516262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 42 - 192
Target Start/End: Complemental strand, 16819132 - 16818982
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| | || ||| ||||||    
T  16819132 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaaatttgccgagtatttgtattgcgatgtcagtccccttcacattttacct 16819033  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcat 192  Q
    |||||| ||||| |||||||||| ||| ||| ||||||| |||||| ||||    
T  16819032 gtcttgcctcgtttcatcgagtcgcctatcagataaagtctatacaatcat 16818982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 19718345 - 19718475
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||| || |    
T  19718345 cttacaccgtcaacggctcgatttgttcacaatagtatcatctccaaggaagtttgctgagtgtttatactgcgatgtcagtccgtctcccatctgactt 19718444  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||  |||||||||||| |||||    
T  19718445 gtcttgtctcggttcatcgagtcacatgtca 19718475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 50 - 191
Target Start/End: Original strand, 1547962 - 1548103
Alignment:
Q  50 gtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtc 149  Q
    |||||||| | |||||||||||||||  |||||| |||||||||||| | |||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  1547962 gtcaacggattgatttgttcacaataggatcatcaccaaggaagttttctgagtgtttgtactgcgatgtcagtccacctcccatcttacatgtcttgtc 1548061  T
Q  150 tcgtctcatcgagtcacctgtcacataaagtttatacagtca 191  Q
    |||| |||||||||||||| ||||||||||| | ||||||||    
T  1548062 tcgtttcatcgagtcacctatcacataaagtctttacagtca 1548103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 20042303 - 20042173
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  20042303 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 20042204  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||  ||||||| |||| |||||    
T  20042203 gtcttgtctcggttcatcgattcacgtgtca 20042173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 24145102 - 24144972
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  24145102 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 24145003  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||  ||||||| |||| |||||    
T  24145002 gtcttgtctcggttcatcgattcacgtgtca 24144972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 18439522 - 18439652
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||||||| |||||  | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||    
T  18439522 cttacaccgtcgacggccagttttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagttcatctcccatcttacct 18439621  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    ||||||||||   |||||||||||| |||||    
T  18439622 gtcttgtctccgttcatcgagtcacatgtca 18439652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 20052340 - 20052210
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||||||| ||||| || ||||||||||||| ||||||||||||||||||| ||||||||| |||||| ||||||||||||  ||||||||||||||    
T  20052340 cttacaccgtcgacggcccgttttgttcacaatagtatcatctccaaggaagttcgccgagtgtgtgtactacgatgtcagtccatctcccatcttacct 20052241  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||| |||||   |||||||||||| |||||    
T  20052240 gtctcgtctccgttcatcgagtcacatgtca 20052210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 16585308 - 16585373
Alignment:
Q  85 ccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtct 150  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||    
T  16585308 ccaatgaagattgtcgagtgtttgtactgcgatgtcagtccgccttccatcttacttgtctagtct 16585373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 16610072 - 16610007
Alignment:
Q  85 ccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtct 150  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||    
T  16610072 ccaatgaagattgtcgagtgtttgtactgcgatgtcagtccgccttccatcttacttgtctagtct 16610007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 28309338 - 28309403
Alignment:
Q  85 ccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtct 150  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||    
T  28309338 ccaatgaagattgtcgagtgtttgtactgcgatgtcagtccgccttccatcttacttgtctagtct 28309403  T

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Target: scaffold0799 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0799
Description:

Target: scaffold0799; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 5010 - 4830
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  5010 cttacaccgtcaacggctcgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtactgctatatcagtccgcctcccatcttacct 4911  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgcaagttgtacattcataacatttgtacat 222  Q
    |||||||||||| || |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||    
T  4910 gtcttgtctcgtttcgtcgagtcacctgtcacataaagtttatatagtcatgcaagttttacattcataaaattcgtacat 4830  T

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Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 55791427 - 55791247
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  55791427 cttacaccgtcaacggctcgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtactgctatatcagtccgcctcccatcttacct 55791328  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgcaagttgtacattcataacatttgtacat 222  Q
    |||||||||||| || |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||    
T  55791327 gtcttgtctcgtttcgtcgagtcacctgtcacataaagtttatatagtcatgcaagttttacattcataaaattcgtacat 55791247  T

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Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 42 - 222
Target Start/End: Original strand, 20559084 - 20559261
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20559084 cttacaccgtaaacggatcgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtactgagatgtcagtccgcctcccatcttacct 20559183  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgcaagttgtacattcataacatttgtacat 222  Q
    |||||||||||  ||||||||| |||||||  | |   || |||||||| | | ||||| |||||||||||||||||||||    
T  20559184 gtcttgtctcggttcatcgagttacctgtcctaca---ttcatacagtcgtacgagttgcacattcataacatttgtacat 20559261  T

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Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 15573314 - 15573148
Alignment:
Q  43 ttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctg 142  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| ||||| ||||||| ||    
T  15573314 ttacaccgtcaatggctcgatttgttcacaatagtatcatctccaaggaagtttgtcgagtgtttgtactgcaatgtcagtccacctccgatcttacatg 15573215  T
Q  143 tcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgcaagttgtacattcata 210  Q
    |||| |||||| |||||||||||| | ||||||||||| | |||||||| || ||||| |||||||||    
T  15573214 tcttatctcgtttcatcgagtcacatatcacataaagtctttacagtcaagc-agttgcacattcata 15573148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 3383908 - 3383778
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||| |    
T  3383908 cttacaccgtcaacggctcgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtactacgatgtcggtccgtctcccatcttactt 3383809  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||  |||||||||||| |||||    
T  3383808 gtcttgtctcggttcatcgagtcacatgtca 3383778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 195
Target Start/End: Complemental strand, 3830276 - 3830123
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| ||||||||||||||||||||||||| ||||| | |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3830276 cttacaccatcaacggctcgatttgttcacaatagtatcaccaccaaagaagcttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 3830177  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    ||||||||||||  ||||||| ||| || ||||||  || ||||||||||||||    
T  3830176 gtcttgtctcgttccatcgaggcacatggcacatacggtctatacagtcatgca 3830123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 42 - 193
Target Start/End: Complemental strand, 15894560 - 15894408
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagt-gtttgtactgcgatgtcagtccgcctcccatcttacc 140  Q
    |||||||||||||||||| ||||||||| ||||| |||||| |||||||||||||||||||| |||||||||||||| || |||| ||||||||||||||    
T  15894560 cttacaccgtcaacggcttgatttgttcgcaatagtatcatttccaaggaagtttgccgagttgtttgtactgcgatatcggtccacctcccatcttacc 15894461  T
Q  141 tgtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatg 193  Q
    |||||| |||||| |||||||||||||||||  ||||||| ||||||||||||    
T  15894460 tgtcttatctcgtttcatcgagtcacctgtcgtataaagtctatacagtcatg 15894408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 42 - 193
Target Start/End: Original strand, 22710023 - 22710174
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| |||| ||||| |||||||||||||||    
T  22710023 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgttagtccacctcccatcttacct 22710122  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatg 193  Q
    |||||||||||  ||||||||||| ||| || |||  || ||||||||||||    
T  22710123 gtcttgtctcggttcatcgagtcatctggcatatacggtctatacagtcatg 22710174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 9189432 - 9189562
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||| || |||    
T  9189432 cttacaccgtcaacggctcaatttgttcacaatagtatcatctctaaggaagtttgtcgagtgtttgtactgcgatgtcagtccacctcccatattgcct 9189531  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||| |||| ||||||| |||||    
T  9189532 gtcttgtctcgtttcattgagtcacatgtca 9189562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 16722241 - 16722111
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||||||  ||||| || |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  16722241 cttacaccgttgacggcccgttttgttcaaaatagtatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccatctcccatcttacct 16722142  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    ||||||||||   |||||||||||| |||||    
T  16722141 gtcttgtctccgttcatcgagtcacatgtca 16722111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 14895372 - 14895475
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||||||    
T  14895372 cttacaccatcaacggctcgatttgttcacaatagtatcatcttcaaggaagtttgccgagtgtttgtactgcgatatcagaccacctcccatcttacct 14895471  T
Q  142 gtct 145  Q
    ||||    
T  14895472 gtct 14895475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 3363775 - 3363892
Alignment:
Q  43 ttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctg 142  Q
    |||| |||||||||| || |||||||| || |||||||||||||||||||| ||||||||||||||||||||  ||||||||| | ||| ||||||| ||    
T  3363775 ttaccccgtcaacggttcaatttgttcgcagtaatatcatctccaaggaagattgccgagtgtttgtactgcagtgtcagtcctcttcctatcttacatg 3363874  T
Q  143 tcttgtctcgtctcatcga 161  Q
    | ||||||  |||||||||    
T  3363875 t-ttgtcttatctcatcga 3363892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 14923472 - 14923536
Alignment:
Q  61 gatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtcc 125  Q
    ||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14923472 gatttgtccacaatagtatcatcaccaaggaagtttgccgagtgtttgtactgcgatgtcagtcc 14923536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 12615773 - 12615687
Alignment:
Q  50 gtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatct 136  Q
    ||||| |||||||||||| | |||| |||||||||||   |||||||||| |||||||||||||| ||||||||| | |||||||||    
T  12615773 gtcaatggctcgatttgtccccaatgatatcatctccgttgaagtttgcctagtgtttgtactgcaatgtcagtctgtctcccatct 12615687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 13729182 - 13729270
Alignment:
Q  79 tcatctccaaggaagtttgccgagtgttt--gtactgcgatgtcagtccgcctcccatcttacc-tgtcttgtctcgtctcatcgagtc 164  Q
    ||||||||||||||||||||||||||| |  |||||| |||| |||||| | | ||| ||||||  ||||||||| |||||||||||||    
T  13729182 tcatctccaaggaagtttgccgagtgtataagtactgtgatgccagtccactttccaccttaccaagtcttgtcttgtctcatcgagtc 13729270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 42 - 222
Target Start/End: Original strand, 12554934 - 12555114
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||||| |    
T  12554934 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaatgaagtttgccgagcgttagtgctgcgatgtcagttcgcctccaatcttacat 12555033  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgcaagttgtacattcataacatttgtacat 222  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  12555034 gtcttgtctcgtttcatcgagtcacctgtcacataaagtttatacagtcatggaagttgtacattcataacattcgtacat 12555114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 13107165 - 13106985
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| ||||||| ||||||| |    
T  13107165 cttacaccgtcaacggctcgttttgttcacaataatatcatctccaatgaagtttgccgagtgcttgtgctgcgatgtcagttcgcctccaatcttacat 13107066  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgcaagttgtacattcataacatttgtacat 222  Q
    ||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13107065 gtcctgtctcgtttcatcgagtcacctgtcacatagagtttatacagtcatgcaagttgtacattcataacatttgtacat 13106985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 23283493 - 23283339
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||| |||||||| | ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23283493 cttacactgtcaacggattgatttgttcacaatattatcatcaccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 23283394  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgcaa 196  Q
    ||||||||||||||||||||||||| ||||| ||||||| |||||||||| ||||    
T  23283393 gtcttgtctcgtctcatcgagtcacatgtcatataaagtctatacagtcaagcaa 23283339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 30091231 - 30091077
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||| ||||| || | ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30091231 cttacactgtcaatggattgatttgttcacaatagtatcatcaccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 30091132  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgcaa 196  Q
    ||||||||||||||||||||||||| ||||| ||||||| |||||||||| ||||    
T  30091131 gtcttgtctcgtctcatcgagtcacatgtcatataaagtctatacagtcaagcaa 30091077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 45 - 191
Target Start/End: Original strand, 15625553 - 15625699
Alignment:
Q  45 acaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtc 144  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||||| ||||    
T  15625553 acaccgtcaacggctcgatttgttcacaatagtatcatctccaaggaagtttgtcgagtgtttgtactacgatgtcggtccgtctcccatcttacatgtc 15625652  T
Q  145 ttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtca 191  Q
    ||||||||| |||||||||||||| ||||||||||| | ||||||||    
T  15625653 ttgtctcgtttcatcgagtcacctatcacataaagtctttacagtca 15625699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 8810369 - 8810522
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  8810369 cttacaccgtcaacggctcgatttgttcacaatagtatcatctccaaggatgtttgccgagtgtttgtactgcgatgttagtccacctcccatcttacct 8810468  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    |||||||||||  ||||||||||| ||| || |||  || |||| |||||||||    
T  8810469 gtcttgtctcggttcatcgagtcatctggcatatacggtctatatagtcatgca 8810522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 15531533 - 15531384
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||| |||||||| | ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15531533 cttacactgtcaacggattgatttgttcacaatagtatcatcaccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccctcttacct 15531434  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtca 191  Q
     | ||||||||| |||||||||||||||||| ||| ||| ||||||||||    
T  15531433 attttgtctcgtttcatcgagtcacctgtcatatacagtctatacagtca 15531384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 21613847 - 21614000
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  21613847 cttacaccgtcaacggctcgatttgttcacaatagtatcatctccaaggatgtttgccgagtgtttgtactgcgatgttagtccacctcccatcttacct 21613946  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    |||||||||||  ||||||||||| ||| || |||  || |||| |||||||||    
T  21613947 gtcttgtctcggttcatcgagtcatctggcatatacggtctatatagtcatgca 21614000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 195
Target Start/End: Complemental strand, 12474472 - 12474319
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||| |||||| ||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  12474472 cttaaaccgtctacggctcaatttgttcataatagtatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgccccgcatcttacct 12474373  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    ||||||||| |  |||||||||||| ||||| ||| ||| ||||||||||||||    
T  12474372 gtcttgtcttggttcatcgagtcacatgtcatatacagtctatacagtcatgca 12474319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 56 - 195
Target Start/End: Original strand, 8610919 - 8611058
Alignment:
Q  56 ggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtctcgtct 155  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||  |||||||||||||| |    
T  8610919 ggctcgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtactgcgatatcagtccacctcccatcttgtctgtcttgtctcgttt 8611018  T
Q  156 catcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    ||||||||||||| ||| ||| ||| |||| |||||||||    
T  8611019 catcgagtcacctatcatatacagtctatatagtcatgca 8611058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 72847 - 72977
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |    
T  72847 cttacactgtcaacggattgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtactgtgatgtcagtccgtctcccatcttactt 72946  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||| |||||||||||| |||||    
T  72947 gtcttgtctcgtttcatcgagtcacatgtca 72977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 8622297 - 8622427
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||| ||||||||||||||    
T  8622297 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcgatgtcggtccgactcccatcttacct 8622396  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||  ||||||| |||| |||||    
T  8622397 gtcttgtctcggttcatcgattcacgtgtca 8622427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 171
Target Start/End: Complemental strand, 14882933 - 14882804
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||| |||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |    
T  14882933 cttacatcgtcaatggctcgatttgttcacaatagtattatctccaaggaagtttgccgagtgtttgtactacgatctcagtccgcctcccatcttacat 14882834  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtc 171  Q
    |||||||||||  ||||||||| |||||||    
T  14882833 gtcttgtctcggttcatcgagttacctgtc 14882804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 5947412 - 5947282
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  5947412 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 5947313  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||  ||||||| |||| |||||    
T  5947312 gtcttgtctcggttcatcgactcacgtgtca 5947282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 6200289 - 6200419
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  6200289 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 6200388  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||  ||||||| |||| |||||    
T  6200389 gtcttgtctcggttcatcgattcacgtgtca 6200419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 3682385 - 3682483
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacc 140  Q
    |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3682385 cttacaccgtcaacggtttgatttgttaacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccaccttacc 3682483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 30018944 - 30019042
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacc 140  Q
    |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30018944 cttacaccgtcaacggtttgatttgttaacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccaccttacc 30019042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 37257353 - 37257223
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| ||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  37257353 cttacaccatcaacggttcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 37257254  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||  ||||||| |||| |||||    
T  37257253 gtcttgtctcggttcatcgattcacgtgtca 37257223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 46383990 - 46384120
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  46383990 cttacaccatcaacggctcgatttgctcacaataaaatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 46384089  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||  ||||||| |||| |||||    
T  46384090 gtcttgtctcggttcatcgactcacgtgtca 46384120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 46394905 - 46394775
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  46394905 cttacaccatcaacggctcgatttgctcgcaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 46394806  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    || ||||||||  ||||||| |||| |||||    
T  46394805 gttttgtctcggttcatcgattcacgtgtca 46394775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 3409722 - 3409792
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtact 112  Q
    |||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3409722 cttacatcgtcaatggctcgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtact 3409792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 16149137 - 16149070
Alignment:
Q  86 caaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtctcgt 153  Q
    ||||||||||||| ||||||||||||||||||||| |||| | |||||| ||||||||||||||||||    
T  16149137 caaggaagtttgcggagtgtttgtactgcgatgtcggtccacttcccattttacctgtcttgtctcgt 16149070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 20446563 - 20446611
Alignment:
Q  79 tcatctccaaggaagtttgccgagtgttt--gtactgcgatgtcagtcc 125  Q
    ||||||||||||||||||||||||||| |  |||||| |||||||||||    
T  20446563 tcatctccaaggaagtttgccgagtgtataagtactgtgatgtcagtcc 20446611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 19373906 - 19374059
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  19373906 cttacaccgtcaacggctcgatttgttcacaatagtatcatctccaaggaagttttccgagtgtttgtactgcgatgtcagtcctcctcccatcttacct 19374005  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    |||||||||||| |||||||||||||||||| ||| ||| |||| |||||||||    
T  19374006 gtcttgtctcgtttcatcgagtcacctgtcatatacagtctatatagtcatgca 19374059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 2337514 - 2337384
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  2337514 cttacaccgtcaacggctcgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccacctcccatcttgcct 2337415  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||| |||||||||||| |||||    
T  2337414 gtcttgtctcgtttcatcgagtcacatgtca 2337384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 42 - 192
Target Start/End: Complemental strand, 6199186 - 6199036
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||| | |||||| ||||||    
T  6199186 cttacaccgtcagcggctcaatttgttcacaatagtatcatctccaaggaagtttgccgagtgttcgtattgcgatgtcagtccccttcccattttacct 6199087  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcat 192  Q
    |||||||||||| |||||||||||||| ||||||||||| |||||| ||||    
T  6199086 gtcttgtctcgtttcatcgagtcacctatcacataaagtctatacaatcat 6199036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 42 - 171
Target Start/End: Original strand, 1960566 - 1960695
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1960566 cttacaccgtcaacggctcaatttgttcacaatagtatcatctccaaggaagtttgccaagtgtttgtactgcgatgtcagtccgcctcccatcttacct 1960665  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtc 171  Q
    ||||||||||   ||||||||| |||||||    
T  1960666 gtcttgtctcagttcatcgagttacctgtc 1960695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 35074273 - 35074396
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||       ||||||||| |    
T  35074273 cttacaccgtcaacggctcaatttgttcacaatagtatcatcttcaaggaaggttgccgagtgtttgtactgcgatgtcagt-------ccatcttactt 35074365  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||| |||||||||||| |||||    
T  35074366 gtcttgtctcgtttcatcgagtcacatgtca 35074396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 5625576 - 5625446
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||  ||||||||||||||    
T  5625576 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccaactcccatcttacct 5625477  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
     |||||||||   ||||||| |||| |||||    
T  5625476 atcttgtctcagttcatcgattcacgtgtca 5625446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 61 - 195
Target Start/End: Complemental strand, 14815194 - 14815059
Alignment:
Q  61 gatttgttcacaataatatcatctccaaggaagtttgccgagt-gtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtctcgtctcatc 159  Q
    ||||||||| ||||| |||||| |||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| |||||  |||||    
T  14815194 gatttgttcgcaatagtatcatttccaaggaagtttgccgagttgtttgtactgcgatgtcggtccacctcccatcttacctgtcttatctcggttcatc 14815095  T
Q  160 gagtcacctgtcacataaagtttatacagtcatgca 195  Q
    |||| |||||||| ||| ||| |||| |||| ||||    
T  14815094 gagttacctgtcatatacagtctatatagtcgtgca 14815059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 21454394 - 21454330
Alignment:
Q  61 gatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtcc 125  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  21454394 gatttgttcacaatagtatcatcaccaaggaagtttgccgagtgtttgtactgcaatgtcagtcc 21454330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2337595 - 2337554
Alignment:
Q  1 aaatggcgactccttccatacctatttttatcaacaatgggctt 44  Q
    ||||||||||||||||||||||  |||||||||| |||||||||    
T  2337595 aaatggcgactccttccatacc--tttttatcaagaatgggctt 2337554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1767 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold1767
Description:

Target: scaffold1767; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 807 - 956
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||    
T  807 cttaaaccgtcaacggctcgatttgttcacaatagtatcatctccaaggaagtttgacgagtgtttgtactgcgatgttagtccacctcccatcttacct 906  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtca 191  Q
    |||||||||||| |||||||||||||||||||||||||| ||| ||||||    
T  907 gtcttgtctcgtttcatcgagtcacctgtcacataaagtctatgcagtca 956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 28570 - 28756
Alignment:
Q  1 aaatggcgactccttccatacctatttttatcaacaatgggcttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccg 100  Q
    ||||||||||| |||||||||||  |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  28570 aaatggcgacttcttccatacct--ttttatcaacgatgggcttacaccgtcaacggctcaatttgttcacaataatatcatttccaaggaagtttgccg 28667  T
Q  101 agtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcat 192  Q
    ||||||||||||||||||||||||||||||   || ||| | ||||||||||| |||| ||||||| ||||| ||| ||| |||||||||||    
T  28668 agtgtttgtactgcgatgtcagtccgcctc---tcctacttatcttgtctcgtttcattgagtcacatgtcatatacagtctatacagtcat 28756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 22158529 - 22158399
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22158529 cttacaccgtcaacggctcgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 22158430  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    ||||||||| || |||||||||||| |||||    
T  22158429 gtcttgtctggtttcatcgagtcacatgtca 22158399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 32004909 - 32005062
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  32004909 cttacatcgtcaatggctcgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccacctcccatcttgcct 32005008  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    |||||||||||| |||||||||||||||||| ||| ||| |||| |||||||||    
T  32005009 gtcttgtctcgtttcatcgagtcacctgtcatatacagtctatatagtcatgca 32005062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 25854693 - 25854563
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||| |    
T  25854693 cttacaccgtcaacggctcgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagttcgtctcctatcttactt 25854594  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||| |||||||||||| |||||    
T  25854593 gtcttgtctcgtttcatcgagtcacatgtca 25854563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 20732087 - 20732241
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagt-gtttgtactgcgatgtcagtccgcctcccatcttacc 140  Q
    ||||||||| ||||| ||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  20732087 cttacaccgccaacgactcgatttgctcaaaataatatcatctccaaggaagtttgccgagttgtttgtactgcgatgtcggtccacctcccatcttacc 20732186  T
Q  141 tgtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    |||||||| |||| ||||||||||||| |||| ||| ||| |||| |||||||||    
T  20732187 tgtcttgtttcgtttcatcgagtcacccgtcatatacagtctatatagtcatgca 20732241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 21477582 - 21477463
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  21477582 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaagtttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 21477483  T
Q  142 gtcttgtctcgtctcatcga 161  Q
    |||||||||||  |||||||    
T  21477482 gtcttgtctcggttcatcga 21477463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 22090829 - 22090745
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccg 126  Q
    ||||||||||||||||||||| | || ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22090829 cttacaccgtcaacggctcgactagtccacaatagtatcatctccaaggaagtttgccgagtgtttgtactgtgatgtcagtccg 22090745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 22088161 - 22088105
Alignment:
Q  120 cagtccgcctcccatcttacctgtcttgtctcgtctcatcgagtcacctgtcacata 176  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||||  ||||||||    
T  22088161 cagtccgcctcccatcttacttgtcttgtctcggttcatcgagtcacaggtcacata 22088105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 42 - 195
Target Start/End: Complemental strand, 29088 - 28935
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| |    
T  29088 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttaccgagtgtttgtattgtgatgtcagtccgcctcccatcttactt 28989  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    |||||||||||  |||||||||||| ||||| ||| ||| ||||||||||||||    
T  28988 gtcttgtctcggttcatcgagtcacatgtcatatacagtctatacagtcatgca 28935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0721 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0721
Description:

Target: scaffold0721; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 42 - 195
Target Start/End: Complemental strand, 5291 - 5138
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| || ||| |||||||||||||||    
T  5291 cttacaccgtcaacggctcgatttgttcacaatagtatcatctccaaggaagtttgccgaatgtttgtactgcgatgacaatccacctcccatcttacct 5192  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    ||||||||||  |||||| |||||||||||| ||| ||||||||| ||||||||    
T  5191 gtcttgtctcagctcatcaagtcacctgtcatatacagtttatacggtcatgca 5138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 90617 - 90770
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||| |||||||| | ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  90617 cttacactgtcaacggattgatttgttcacaatagtatcatcaccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccctcttacct 90716  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
     ||||||||||| |||||||| ||||||||| ||| ||| ||||||||||||||    
T  90717 atcttgtctcgtttcatcgagacacctgtcatatacagtctatacagtcatgca 90770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 14975 - 14827
Alignment:
Q  45 acaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtc 144  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14975 acaccgtcaacggctcgatttgttcacaatggtatcatctccaaggaagtttgccaagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtc 14876  T
Q  145 ttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatg 193  Q
    ||||||||  ||||   ||||||||||| ||| ||| ||||||||||||    
T  14875 ttgtctcggttcattaggtcacctgtcatatacagtctatacagtcatg 14827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 20339 - 20482
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  20339 cttacatcgtcaatggctcgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccacctcccatctttcct 20438  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttata 185  Q
    ||||||| |||| |||||||||||||||||| ||| ||| ||||    
T  20439 gtcttgtgtcgtttcatcgagtcacctgtcatatacagtctata 20482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 45 - 195
Target Start/End: Complemental strand, 2669 - 2519
Alignment:
Q  45 acaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtc 144  Q
    ||||||||||||| | |||||||| ||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2669 acaccgtcaacggtttgatttgttaacaataatatcacatccaaggaaatttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacatgtc 2570  T
Q  145 ttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    ||||||||| |||||||||||||||||| ||| ||| |||| |||||||||    
T  2569 ttgtctcgtttcatcgagtcacctgtcatatacagtctatatagtcatgca 2519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 42 - 195
Target Start/End: Complemental strand, 189706 - 189552
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  189706 cttacactgtcaacggctcgatttgttcacaatggtatcatctccaaggaagtttgccgagtgtttgtattgcgatgtcagtccgcctcccatcttacct 189607  T
Q  142 gtcttgtctc-gtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    |||||||||| || |||| |||||||  |||| ||| ||| ||||||||||||||    
T  189606 gtcttgtctcggtttcattgagtcacacgtcatatacagtctatacagtcatgca 189552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 34134495 - 34134365
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  34134495 cttacaccgtcaacggctcgatttgttcacatttgtatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgtctcccatcttactt 34134396  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||| |||||||||||| |||||    
T  34134395 gtcttgtctcgtttcatcgagtcacatgtca 34134365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 844455 - 844608
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |    
T  844455 cttacaccgtcaacggctcgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtacttcgatgtcagtccgcctctcatcctactt 844554  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
     |||||||| || |||| ||||||| ||||| ||| ||| ||||||||||||||    
T  844555 atcttgtcttgtttcattgagtcacatgtcatatacagtctatacagtcatgca 844608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 851631 - 851784
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |    
T  851631 cttacaccgtcaacggctcgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtacttcgatgtcagtccgcctctcatcctactt 851730  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
     |||||||| || |||| ||||||| ||||| ||| ||| ||||||||||||||    
T  851731 atcttgtcttgtttcattgagtcacatgtcatatacagtctatacagtcatgca 851784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 1209635 - 1209788
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |    
T  1209635 cttacaccgtcaacggctcgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtacttcgatgtcagtccgcctctcatcctactt 1209734  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
     |||||||| || |||| ||||||| ||||| ||| ||| ||||||||||||||    
T  1209735 atcttgtcttgtttcattgagtcacatgtcatatacagtctatacagtcatgca 1209788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 42 - 193
Target Start/End: Complemental strand, 23880994 - 23880843
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  23880994 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 23880895  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatg 193  Q
    |||||||||||  ||||||||||| ||| || |||  || ||||||||||||    
T  23880894 gtcttgtctcggttcatcgagtcatctggcatatacggtctatacagtcatg 23880843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 15768329 - 15768188
Alignment:
Q  50 gtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtc 149  Q
    |||||||| | |||||||||||||||  |||||| |||||||||||| | |||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  15768329 gtcaacggattgatttgttcacaataggatcatcaccaaggaagttttctgagtgtttgtactgcgatgtcagtccacctcccatcttacatgtcttgtc 15768230  T
Q  150 tcgtctcatcgagtcacctgtcacataaagtttatacagtca 191  Q
    |||| |||||||||||||| ||||||||||| | ||||||||    
T  15768229 tcgtttcatcgagtcacctatcacataaagtctttacagtca 15768188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 30366465 - 30366335
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  30366465 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 30366366  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||  ||||||| |||| |||||    
T  30366365 gtcttgtctcggttcatcgactcacgtgtca 30366335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 42632668 - 42632538
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  42632668 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 42632569  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||  ||||||| |||| |||||    
T  42632568 gtcttgtctcggttcatcgattcacgtgtca 42632538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 45 - 210
Target Start/End: Original strand, 12589549 - 12589713
Alignment:
Q  45 acaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtc 144  Q
    ||||||||||||  | ||||| |||| ||||||||||||||||| ||||||||||||||||||||||| || |||| ||| |||||||||||||||||||    
T  12589549 acaccgtcaacgaattgatttattcataataatatcatctccaatgaagtttgccgagtgtttgtactacgttgtcggtctgcctcccatcttacctgtc 12589648  T
Q  145 ttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgcaagttgtacattcata 210  Q
    ||| ||||| ||||||||| || ||||| ||| ||| ||||||||||||| ||||| |||||||||    
T  12589649 ttgcctcgtttcatcgagtaacttgtcatatacagtctatacagtcatgc-agttgcacattcata 12589713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 3426064 - 3425966
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacc 140  Q
    |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3426064 cttacaccgtcaacggtttgatttgttaacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccaccttacc 3425966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 16389920 - 16389790
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  16389920 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 16389821  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    ||||||||||   ||||||| |||| |||||    
T  16389820 gtcttgtctcagttcatcgattcacgtgtca 16389790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 9472949 - 9473058
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| ||| ||||| ||||| ||||||||||||||    
T  9472949 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgaatgtttgtaatgcaatgtcggtccgactcccatcttacct 9473048  T
Q  142 gtcttgtctc 151  Q
    ||||||||||    
T  9473049 gtcttgtctc 9473058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 8816290 - 8816420
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||| ||||||||| || ||||||||||||||||||||||| |||||||||||||||| ||| |||||  |||| ||||||||||||||    
T  8816290 cttacaccatcaacgactcgatttgctcgcaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcgatccgactcccatcttacct 8816389  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||  ||||||| |||| |||||    
T  8816390 gtcttgtctcggttcatcgattcacgtgtca 8816420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 18158934 - 18158835
Alignment:
Q  64 ttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtctcgtctcatcgagt 163  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||| ||||| ||||| || |||||||||    
T  18158934 ttgttcacaatagtatcatctccaaggaagtttgccgagtgttggtattgtgatgtcagtccgcctcccatcttatctgtcgtgtcttgtttcatcgagt 18158835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 16267695 - 16267578
Alignment:
Q  43 ttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctg 142  Q
    |||| |||||||||| || |||||||| || |||||||||||||||||||| ||||||||||||||||||||  ||||||||| | ||| ||||||| ||    
T  16267695 ttaccccgtcaacggttcaatttgttcgcagtaatatcatctccaaggaagattgccgagtgtttgtactgcagtgtcagtcctcttcctatcttacatg 16267596  T
Q  143 tcttgtctcgtctcatcga 161  Q
    | ||||||  |||||||||    
T  16267595 t-ttgtcttatctcatcga 16267578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 4942548 - 4942483
Alignment:
Q  85 ccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtct 150  Q
    |||| |||| |||||||||||||||||||| |||||||||| ||| ||||||||| ||||| ||||    
T  4942548 ccaatgaagattgccgagtgtttgtactgcaatgtcagtccaccttccatcttacttgtctagtct 4942483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 795197 - 795110
Alignment:
Q  79 tcatctccaaggaagtttgccgagtgt-ttgtactgcgatgtcagtccgcctcccatcttacc-tgtcttgtctcgtctcatcgagtc 164  Q
    ||||||||||||||||||||||||||| | |||||| ||||||||||| | | ||| ||||||   |||||||| |||||||||||||    
T  795197 tcatctccaaggaagtttgccgagtgtatagtactgtgatgtcagtccactttccaccttaccaaatcttgtcttgtctcatcgagtc 795110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 563816 - 563759
Alignment:
Q  84 tccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||| |||| |||| |||||||||||||||||||||| ||  ||||| |||||||||    
T  563816 tccaatgaagattgctgagtgtttgtactgcgatgtcattcaacctcctatcttacct 563759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 16284038 - 16283950
Alignment:
Q  79 tcatctccaaggaagtttgccgagtgttt--gtactgcgatgtcagtccgcctcccatcttacc-tgtcttgtctcgtctcatcgagtc 164  Q
    ||||||| ||||||||||||||||||| |  |||||| ||||||||||| | | ||| ||||||   |||||||| |||||||||||||    
T  16284038 tcatctcaaaggaagtttgccgagtgtataagtactgtgatgtcagtccactttccaccttaccaaatcttgtcttgtctcatcgagtc 16283950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 27970983 - 27970926
Alignment:
Q  84 tccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||| |||| |||| |||||||||||||||||||||| ||  ||||| |||||||||    
T  27970983 tccaatgaagattgctgagtgtttgtactgcgatgtcattcaacctcctatcttacct 27970926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 19522 - 19675
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    ||||||| |||||||| | ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  19522 cttacactgtcaacggattgatttgttcacaatagtatcatctccaaggaagttttccgagtgtttgtactgcgatgtcagtccacctcccattttacct 19621  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatgca 195  Q
    |||||||||||  |||||||||||| ||||| ||| ||| ||||||||||||||    
T  19622 gtcttgtctcggttcatcgagtcacatgtcatatacagtctatacagtcatgca 19675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 20276496 - 20276347
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| |||    
T  20276496 cttacatcgtcaatggctcgatttgttcacaatagtatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcaatccaccttccatcttgcct 20276397  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtca 191  Q
    |||||||||||| |||||||||||||| ||| ||| ||| |||| |||||    
T  20276396 gtcttgtctcgtttcatcgagtcacctatcatatacagtctatatagtca 20276347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 24695107 - 24695295
Alignment:
Q  43 ttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctg 142  Q
    |||| ||||| |||| || | |||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24695107 ttaccccgtcgacggttcaacttgttcacaacagtattatctccaaggaagtttgccgagtgttggtactgcgatgtcagtccgcctcccatcttacctg 24695206  T
Q  143 tcttgtctcgtctcatcgag-tcacctgtca--------cataaagtttatacagtcatgcaagttgtacattcataacatttgtacat 222  Q
    || ||||| || |||||||| ||  ||||||        |||| ||||||||||||||| | ||||| |||||||||||||||||||||    
T  24695207 tcgtgtcttgtttcatcgagttcgtctgtcatatatggtcatacagtttatacagtcatacgagttgcacattcataacatttgtacat 24695295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 12387237 - 12387367
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||  ||||||||| ||| ||||| ||||| ||||||||||||||    
T  12387237 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccaggtgtttgtaatgcaatgtcggtccgactcccatcttacct 12387336  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    | ||||||||   ||||||| |||| |||||    
T  12387337 gccttgtctcagttcatcgattcacgtgtca 12387367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 189
Target Start/End: Complemental strand, 40388256 - 40388117
Alignment:
Q  50 gtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtc 149  Q
    ||||| |||| ||||||||||||||  ||||||||||||||||| |||  ||||||| ||||| ||||||  |||  | | ||||||||||||||||||     
T  40388256 gtcaagggcttgatttgttcacaatggtatcatctccaaggaagattgttgagtgttggtactacgatgttggtcaactttccatcttacctgtcttgtt 40388157  T
Q  150 tcgtctcatcgagtcacctgtcacataaagtttatacagt 189  Q
    || | |||||||||||||| ||| ||  ||||||||||||    
T  40388156 tcatttcatcgagtcacctatcatatgtagtttatacagt 40388117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 17878205 - 17878299
Alignment:
Q  50 gtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtc 144  Q
    ||||| ||||||||||||   |||| ||||||||||| | |||| ||  |||||||||||||||| |||||||||| ||||||||||||| ||||    
T  17878205 gtcaatggctcgatttgtctccaatgatatcatctccgatgaagattctcgagtgtttgtactgcaatgtcagtccacctcccatcttacttgtc 17878299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 21752453 - 21752367
Alignment:
Q  79 tcatctccaaggaagtttgccgagtgttt-gtactgcgatgtcagtccgcctcccatcttacctgtcttgtctcgtctcatcgagtc 164  Q
    ||||||||||||| ||||||||||| | | |||||  ||||||||||| | | ||| |||||| ||||||||| |||||||||||||    
T  21752453 tcatctccaaggaggtttgccgagtttatagtactatgatgtcagtccactttccaccttaccagtcttgtcttgtctcatcgagtc 21752367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 21757414 - 21757328
Alignment:
Q  79 tcatctccaaggaagtttgccgagtgttt-gtactgcgatgtcagtccgcctcccatcttacctgtcttgtctcgtctcatcgagtc 164  Q
    ||||||||||||| ||||||||||| | | |||||  ||||||||||| | | ||| |||||| ||||||||| |||||||||||||    
T  21757414 tcatctccaaggaggtttgccgagtttatagtactatgatgtcagtccactttccaccttaccagtcttgtcttgtctcatcgagtc 21757328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 51 - 191
Target Start/End: Original strand, 57641 - 57781
Alignment:
Q  51 tcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtct 150  Q
    |||||||||||||||| |||||||| |||||| || ||||||||||  ||||||||||||||||||| || |||| ||||||||||||||||||||||||    
T  57641 tcaacggctcgatttgctcacaatagtatcatatcaaaggaagtttcgcgagtgtttgtactgcgatatcggtccacctcccatcttacctgtcttgtct 57740  T
Q  151 cgtctcatcgagtcacctgtcacataaagtttatacagtca 191  Q
    ||| |||||||||||||||||| ||||||| ||||||||||    
T  57741 cgtttcatcgagtcacctgtcatataaagtatatacagtca 57781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 42 - 193
Target Start/End: Complemental strand, 20243 - 20092
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  20243 cttacaccatcaacggctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 20144  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcatg 193  Q
    |||||||||||  ||||||||||| ||| || |||  || ||||||||||||    
T  20143 gtcttgtctcggttcatcgagtcatctggcatatacggtctatacagtcatg 20092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 50 - 180
Target Start/End: Complemental strand, 7963 - 7833
Alignment:
Q  50 gtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtc 149  Q
    |||||||| | ||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  7963 gtcaacgggttgattttttcacaatagtatcatctccaaggaagtttgtcgagtgtttgtactgtgatgtcagtccatctcccatcttacctgtcttgtc 7864  T
Q  150 tcgtctcatcgagtcacctgtcacataaagt 180  Q
    |||| |||||||||||||| |||||||||||    
T  7863 tcgtttcatcgagtcacctatcacataaagt 7833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 11464 - 11606
Alignment:
Q  43 ttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctg 142  Q
    ||||||||||||||| | ||||||||||||||| ||||||| |||| |||||||||||||||||| |||||||||||||||||||||||| |||| |||     
T  11464 ttacaccgtcaacggattgatttgttcacaatagtatcatcaccaatgaagtttgccgagtgtttatactgcgatgtcagtccgcctcccctctttccta 11563  T
Q  143 tcttgtctcgtctcatcgagtcacctgtcacataaagtttata 185  Q
    ||||||||||| |||||||||||| ||||| ||| ||||||||    
T  11564 tcttgtctcgtttcatcgagtcacttgtcatatacagtttata 11606  T

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Target: scaffold0551 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 51 - 172
Target Start/End: Complemental strand, 724 - 602
Alignment:
Q  51 tcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagt-gtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtc 149  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||| || |||| |||||||||||| ||||||||||    
T  724 tcaacggctcgatttgttcacaatagtatcatttccaaggaagtttgccgagttgtttgtactgcgatatcggtccacctcccatcttatctgtcttgtc 625  T
Q  150 tcgtctcatcgagtcacctgtca 172  Q
    |||| ||||||||||||||||||    
T  624 tcgtttcatcgagtcacctgtca 602  T

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Target: scaffold0932 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0932
Description:

Target: scaffold0932; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 3978 - 4108
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||||||| ||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  3978 cttacaccatcaacagctcgatttgctcacaataatatcatctccaaggaaggttgccgagtgtttgtaatgcaatgtcggtccgactcccatcttacct 4077  T
Q  142 gtcttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||||  ||||||| |||| |||||    
T  4078 gtcttgtctcggttcatcgattcacgtgtca 4108  T

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Target: scaffold0125 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 43 - 163
Target Start/End: Original strand, 14331 - 14451
Alignment:
Q  43 ttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctg 142  Q
    |||| |||||||||| || ||||||||||| ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |     
T  14331 ttaccccgtcaacggttcaatttgttcacagtaatatcatcttcaaagaagtttgctgagtgtttgtactgcgatgtcagtccgcctcccatcttacata 14430  T
Q  143 tcttgtctcgtctcatcgagt 163  Q
    ||||||||| | |||||||||    
T  14431 tcttgtctcatttcatcgagt 14451  T

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Target: scaffold0014 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 181584 - 181464
Alignment:
Q  43 ttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctg 142  Q
    |||| |||||||||| || ||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| |||||||| |     
T  181584 ttaccccgtcaacggttcaatttgttcacagtaatatcatcttcaaagaagtttgccgagtgtttgtactgcgatatcagtccgcctctcatcttacata 181485  T
Q  143 tcttgtctcgtctcatcgagt 163  Q
    ||||||||| | |||||||||    
T  181484 tcttgtctcatttcatcgagt 181464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 2646 - 2763
Alignment:
Q  45 acaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttac-ctgt 143  Q
    |||||||||||||| |||| |||||| |||||||||||||||||||||||||           |||||||||||||||||||||||||||| |||  | |    
T  2646 acaccgtcaacggcacgatatgttcagaataatatcatctccaaggaagttt-----------gtactgcgatgtcagtccgcctcccatcatacattat 2734  T
Q  144 cttgtctcgtctcatcgagtcacctgtca 172  Q
    |||||||||| ||||||||||||||||||    
T  2735 cttgtctcgtttcatcgagtcacctgtca 2763  T

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Target: scaffold0323 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 5477 - 5386
Alignment:
Q  101 agtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtctcgtctcatcgagtcacctgtcacataaagtttatacagtcat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||| ||||| ||| ||| || ||||||||    
T  5477 agtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtctcggtttatcgagtcacatgtcatatacagtctagacagtcat 5386  T

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Target: scaffold0323; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 6641 - 6577
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtt 106  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  6641 cttacaccgtcaacggctcgatttgttcacaatagtatcatctacaaggaagtttgccgagtgtt 6577  T

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Target: scaffold0138 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 2793 - 2875
Alignment:
Q  43 ttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtcc 125  Q
    |||||| |||||||| | |||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2793 ttacactgtcaacggattgatttgtttacaatagtatcatcaccaaggaagtttgccgagtgtttgtactgcgatgtcagtcc 2875  T

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Target: scaffold0202 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 22750 - 22658
Alignment:
Q  42 cttacaccgtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccg-agtgtttgtactgcgatgtcagtccgcctccca 133  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||| ||| || |||| |||||||    
T  22750 cttacaccgtcaacggctcgatttgttcacaatagtatcatctcaaaggaagtttgccgaattgtttgtactgagatatcggtccacctccca 22658  T

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Target: scaffold0031 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 172
Target Start/End: Complemental strand, 26770 - 26648
Alignment:
Q  50 gtcaacggctcgatttgttcacaataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacctgtcttgtc 149  Q
    |||||||| ||||| |||||| ||| ||| ||| |  || ||||||||| |||||||| ||| || |||||||||| |  |||| |||| ||||||||||    
T  26770 gtcaacgggtcgatctgttcataatgataacatatagaaagaagtttgcggagtgtttataccgcaatgtcagtccactacccagcttatctgtcttgtc 26671  T
Q  150 tcgtctcatcgagtcacctgtca 172  Q
    |||||| ||||||||||||||||    
T  26670 tcgtctgatcgagtcacctgtca 26648  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 156028 - 156090
Alignment:
Q  71 caataatatcatctccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctccca 133  Q
    |||| ||| ||||||| | |||||||||| ||||||||||||| ||||||||||| |||||||    
T  156028 caatgataccatctccgatgaagtttgccaagtgtttgtactgagatgtcagtccacctccca 156090  T

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Target: scaffold0605 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 2820 - 2764
Alignment:
Q  85 ccaaggaagtttgccgagtgtttgtactgcgatgtcagtccgcctcccatcttacct 141  Q
    |||| |||| |||||||||||||||| ||||||| | |||| |||||||| ||||||    
T  2820 ccaatgaagattgccgagtgtttgtaatgcgatgacggtccacctcccattttacct 2764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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