View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_9 (Length: 518)
Name: NF1911_low_9
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 215 - 502
Target Start/End: Complemental strand, 6103599 - 6103319
Alignment:
| Q |
215 |
aaatttagtttgaccattattgactgggaaattttggtcctgtagacgttctttaatatttggttaagatttttatgttaaggaaaggattgattgtgag |
314 |
Q |
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| T |
6103599 |
aaatttagtttgaccattattgactgggaaattttggtcctgtagacgttctttaatgtttggttaagatttttatgttaaggaaaggattgattgtgag |
6103500 |
T |
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| Q |
315 |
catttggtggaagaatgtgacggcaacggttagagaggattctgatggaatttgagagatggatcgtgttgctaacggtgttaggatgtgttgttgttga |
414 |
Q |
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| T |
6103499 |
catttggtggaagaatgtgacggcaacggttagagaggattctgatggaatttgagagatggatcgtg--------ggtgttaggatgtgttgttgttga |
6103408 |
T |
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| Q |
415 |
agataagtaaaattcagagaaggagttattagttattacagtgttggagatgaaacaaataaggagtaa-ttttagtttagggattttg |
502 |
Q |
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| T |
6103407 |
agacaagtaaaagtcagggaaggagttattagttattacagtgttggagatgaaacaaataaggagtaatttttagtttagggaatttg |
6103319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 6103689 - 6103598
Alignment:
| Q |
18 |
tcttctaccttaattttctgcatagactttgttccacactcctcaaagatgctaaacttatctaatttcatggctatgcaattgttcattaa |
109 |
Q |
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| T |
6103689 |
tcttctaccttaattttctgcatagactttgttccacactcctcaaagatgctaaacttatctaatttcatggctatgcaattgttcattaa |
6103598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 21460755 - 21460706
Alignment:
| Q |
289 |
atgttaaggaaaggattgattgtgagcatttggtggaagaatgtgacggc |
338 |
Q |
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| T |
21460755 |
atgttagggagaggtttgagtgtgagcatttggtgaaagaatgtgacggc |
21460706 |
T |
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