View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19120_high_1 (Length: 888)
Name: NF19120_high_1
Description: NF19120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19120_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 294 - 874
Target Start/End: Original strand, 36586427 - 36587010
Alignment:
| Q |
294 |
tacatctgtgtttaagttcaattaccaatcttagagacatgaaatctacctgcatttctttatatggacgccactcttttgcttcaccccatttatctcc |
393 |
Q |
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| T |
36586427 |
tacatctgtgtttaagttcaattaccaatcttagagacatgaaatctacctgcatttctttatatggacgccactcttttgcttcaccccatttatctcc |
36586526 |
T |
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| Q |
394 |
acttctataacctagtacataccaataatctaaatatcaatgacaagcagaaaatataaatagaaaaacttata-tggtaaatgacatataacttccctg |
492 |
Q |
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| T |
36586527 |
acttctataacctagtacataccaataatctaaatatcaatgacaagcagaaaatataaatagaaaaacttataggggtaaaagacatataacttccctg |
36586626 |
T |
|
| Q |
493 |
atatttcagccattttttgttttcacacatgaatgtaacataaaccttattaagtttcaaatagaaaataaaatgttacattctacactttagc-ttccc |
591 |
Q |
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| T |
36586627 |
atatttcagccattttttgttttcacacatgaatgtagcataaaccttattaagtttcaaatagaaaataaaatgttac--tctacactttagcatcccc |
36586724 |
T |
|
| Q |
592 |
atgagtaacatgaaaggcataccaattcaaaaaggttgagttacttacttgcaagttgcaagctggcttatctcatgtgttttcattttaacccaaactt |
691 |
Q |
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| T |
36586725 |
gtgagtaacatgaaagccgtgccagttcaaaaaggttgag----ttacttgcaagttgcaatctggtttatctcatgcattttcattttaacccaaactt |
36586820 |
T |
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| Q |
692 |
cagagggttgtgagagttgcaaaatgtcttattcttta-aagttaaaaatgacta------aaggaaatcaatggtgataacctaatattatgcagctat |
784 |
Q |
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| T |
36586821 |
cagagggttgtgacttgtgagagttacagaattctttataagttaaaaatgactaaaaatcaaggaaatcaatggtaataccctaatatcatgcagctct |
36586920 |
T |
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| Q |
785 |
gcaaacctataatcctctccaaaatggaagcacttggacaatattacatatcttggtgaactttaagtgtgcatgatagtagaagttctt |
874 |
Q |
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| T |
36586921 |
gaagacctacgaacctctccaaaatggaagcacttggataatactagatatcatggagaaatttaagtgtgcatgatagcagatgttctt |
36587010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 36586147 - 36586397
Alignment:
| Q |
16 |
atcaatgcaaagattagtttctacgaaattaaatagttaagcagacagctcgatcggtgagctgagggccatgaaaggagtaataatcagaaggtccaac |
115 |
Q |
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| T |
36586147 |
atcaatgcaaagattagtttctacgaaattaaatagttaagcagacagctcgatcggtgagctgagggccatgaaaggagtaataatcagaaagtccaac |
36586246 |
T |
|
| Q |
116 |
cttcgaaccatggatagtggatactaacatagcgtgctataaattagcctnnnnnnntaaccactgatagtccctgttcaagactttccagact--attg |
213 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36586247 |
cttcaaaccatggatagtggatactaacatagcgtgctataaattagcctaaaaaaataaccactgatagtccctgttcaagactttccagactcgattg |
36586346 |
T |
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| Q |
214 |
attactttcattcatacaaaggcgagtctaaatatatatctgcatgttttg |
264 |
Q |
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| T |
36586347 |
attactttcattcatacaaagtcgagtctaaatatatatctgcatgttttg |
36586397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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