View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19120_high_13 (Length: 237)
Name: NF19120_high_13
Description: NF19120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19120_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 35042550 - 35042336
Alignment:
| Q |
1 |
aaacaggataaatatatcaatataaaatcaagtgcaataattatgaatggccacatttgcttagttatgaacaatt-----gatttgactcatagcaaac |
95 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
35042550 |
aaacatgataaatatatcaatataaaagcaagtgcaataattatgaatggccacatttgcttagttatgaacaattatattgacttgactcatagcaaac |
35042451 |
T |
|
| Q |
96 |
ttcatgtgtgaattgtgattggttcaatgtttcccact--------acgtcccaatgttcttttcac--tgatttcaagaagcaacaaagacaaaatgta |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35042450 |
ttcatgtgtgaattgtgattggttcaatgtttcccactgcaatctcacgtcccaatgttcttttcactgtgatttcaagaagcaacaaagacaaaatgta |
35042351 |
T |
|
| Q |
186 |
aaaactcaccgttgt |
200 |
Q |
| |
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||||||||| ||||| |
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|
| T |
35042350 |
aaaactcactgttgt |
35042336 |
T |
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