View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19120_high_2 (Length: 558)
Name: NF19120_high_2
Description: NF19120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19120_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 76 - 540
Target Start/End: Complemental strand, 46898595 - 46898130
Alignment:
| Q |
76 |
tgaaggcctctctgctaggtagattggtgagaaagaagcaagaaagcagggtgaaaaatgaataaaatagtgatatcgggaacaggcaacagcaaagtaa |
175 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46898595 |
tgaaggcctctctgctagatagattggtgagaaagaagcaagaaagcagggtgaaaaatgaataaaatagtgatatcgggaacaggcaacagcaaagtaa |
46898496 |
T |
|
| Q |
176 |
cacttttgaggcggtgactctctacatgttaatttgtacatatcaattcatcatatatataacattgtacagtgaggcaatagtatgtcataatatttat |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46898495 |
cacttttgaggcggtgactctctacatgttaatttgtacatatcaattcatcatatatataacattgtacagtgaggcaatagtatgtcataatatttat |
46898396 |
T |
|
| Q |
276 |
gttttgaatcctatgtatgatattgataagttatttgtagtcaaggtgatttgacataggtctagcatgnnnnnnnaaaccaatataatcaagtgtgttt |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46898395 |
gttttgaatcctatgtatgatattgataagttatttgtagtcaaggtaatttgacataggtctagcatgtttttttaaaccaatataatcaagtgtgttt |
46898296 |
T |
|
| Q |
376 |
ttaggcataatcgaacaaaaacaatgggccgagcatgaacagtgtctgccgatatggatgttgagacgctcaagtcagtatgagagcaaagaagaagagg |
475 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46898295 |
ttaggcgtgatcgaacaaaaacaatgggccgagcatgaacagtgtctgccgatatggatgttgacacgctcaagtcagtatgagagcaaagaggaagagg |
46898196 |
T |
|
| Q |
476 |
tatcaagtggaaagagttgtgtaccatgtattatatgatgaatgatgtttt-ttataagcaccaga |
540 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| |||||||| |
|
|
| T |
46898195 |
tatcaagtggaaagagttgtgtaccatgcattatatgatgaatggtgttttgttataggcaccaga |
46898130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 500
Target Start/End: Complemental strand, 32715284 - 32715228
Alignment:
| Q |
444 |
ctcaagtcagtatgagagcaaagaagaagaggtatcaagtggaaagagttgtgtacc |
500 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
32715284 |
ctcaagttagtatgagagcaaagagtgagaggtatcaagtggaaggaattgtgtacc |
32715228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University