View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19120_high_3 (Length: 432)
Name: NF19120_high_3
Description: NF19120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19120_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 8 - 432
Target Start/End: Original strand, 23606184 - 23606608
Alignment:
| Q |
8 |
cagcacagacaacaatcagcgcaaaagcccgttattcttgaggaattgaatagcatgatccttcacctatcatgtcttgttttacaccctgtacttcgtt |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23606184 |
cagcacacacaacaatcagcgcaaaagcccgttattcttgaggaattgaatagcatgatccttcacctatcatgtcttgttttacaccctgtacttcgtt |
23606283 |
T |
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| Q |
108 |
gactgcatgtcttagcatgcaacagtcacattaatggcactaacgtccaacatcaacttggtgttttggtttagtaatctgcatgccctaaaccattcca |
207 |
Q |
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| T |
23606284 |
gactgcatgtcttagcatgcaacagtcacattaatggcactaacgtccaacatcaacttggtgttttggtttagtaatctgcatgccctaaaccattcca |
23606383 |
T |
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| Q |
208 |
aacttaacacgtgttttttaacctgttacacgcatcttcctcgcatcattcacatgcatccccacaatttgaatcttcttctctacccattgcattcttt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23606384 |
aacttaacacgtgttttttaacctgttacacgcatcttcctcgcatcattcacatgcatccccacaatttggatcttcttctctacccattgcattcttt |
23606483 |
T |
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| Q |
308 |
gaagtttgaaacctgctttatctggttacaactaagtatctctatctttctctgtgtaatgtgtctggatctttgttcttccttttgttttccttatttt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| |
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| T |
23606484 |
gaagtttgaaacctgctttatctggttacaactaagtatctccatctttctctgtgtaatgtgtctgtatctttgttcttctttttgttttccttctttt |
23606583 |
T |
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| Q |
408 |
aaggatttcatgaactttaatttta |
432 |
Q |
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| T |
23606584 |
aaggatttcatgaactttaatttta |
23606608 |
T |
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