View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19120_high_4 (Length: 390)
Name: NF19120_high_4
Description: NF19120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19120_high_4 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 375
Target Start/End: Complemental strand, 12324055 - 12323687
Alignment:
| Q |
7 |
tcgaagaatataaattaagtgtaatttactaaattatcctttattttaaattgatttaaatggggacaaatcatgaagttttttgtccaaatnnnnnnnt |
106 |
Q |
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| T |
12324055 |
tcgaaaaataaaaattaagtgtaatttactaaattatcctttattttaaattgatttaaatggggacaagtcatgaagttttttgtccaaataaaaaaat |
12323956 |
T |
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| Q |
107 |
gcacacttgttaacttaaatcttaatatttttaggttggtctaagttaaccatccatatatatcatactgatggatacatttggcaatcgggactcactg |
206 |
Q |
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| T |
12323955 |
gcacacttgttaacttaaatcttaatatttttaggttggtctaagttaacgatccatatatatcatactgatggatacatttggcaatcgggactcactg |
12323856 |
T |
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| Q |
207 |
catatgtgtttcttgctgagtgacataggtatgttgaatgcactggatccgcaatctcagctctaggtctcttcaaaaaactataccctaaccatagaac |
306 |
Q |
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| T |
12323855 |
catatgtgtttcttgctgagtgacataggtatgttgaatgcactggatccgcaatctcagctctaggtctcttcaaaaaactataccctaaccatagaac |
12323756 |
T |
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| Q |
307 |
aaaggaaataagtaactgcatcgccaaaggaatctgttacattgaaaacacacaaaatcttgatggctc |
375 |
Q |
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| T |
12323755 |
aaaggaaataagtaactgcatcgcgaaaggaatctgttacattgaaaacacacaaaatcttgatggctc |
12323687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 231 - 375
Target Start/End: Complemental strand, 12292333 - 12292189
Alignment:
| Q |
231 |
ataggtatgttgaatgcactggatccgcaatctcagctctaggtctcttcaaaaaactataccctaaccatagaacaaaggaaataagtaactgcatcgc |
330 |
Q |
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| T |
12292333 |
ataggtacgttgaatgcactggatctgcattacaagctcttgctctcttcacaaaactatatccaaaacatagaacaaaggaaatacataactccattgc |
12292234 |
T |
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| Q |
331 |
caaaggaatctgttacattgaaaacacacaaaatcttgatggctc |
375 |
Q |
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| T |
12292233 |
caaagcaatcagttacatcgaacacacacaaaatcctgacggctc |
12292189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 41218652 - 41218693
Alignment:
| Q |
29 |
aatttactaaattatcctttattttaaattgatttaaatggg |
70 |
Q |
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| T |
41218652 |
aatttactaaattatcctttattttaaattggtttgaatggg |
41218693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 9626612 - 9626660
Alignment:
| Q |
108 |
cacacttgttaacttaaatcttaatatttttaggttggtctaagttaac |
156 |
Q |
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| T |
9626612 |
cacacttattaacttaaaccttaatgtttttaggttgatccaagttaac |
9626660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 31612186 - 31612311
Alignment:
| Q |
18 |
aaattaagtgtaatttactaaattatcctttattttaaattgatttaaatggggacaaatcatgaagttttttgtccaaatnnnnnnntgcacacttgtt |
117 |
Q |
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| T |
31612186 |
aaattgagtgtaattcactaaattgtcctttattttaaattggtttgaatatggacaa---gtgaatttttttgtccaaataaaaaggtacacatttgct |
31612282 |
T |
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| Q |
118 |
aacttaaatcttaatatttttaggttggt |
146 |
Q |
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| T |
31612283 |
aacttagaccttaatgtttttaggttggt |
31612311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 31612090 - 31612046
Alignment:
| Q |
107 |
gcacacttgttaacttaaatcttaatatttttaggttggtctaag |
151 |
Q |
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| T |
31612090 |
gcacacttgttaacttagaccttaatattttcaggttggtctaag |
31612046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 116689 - 116647
Alignment:
| Q |
29 |
aatttactaaattatcctttattttaaattgatttaaatgggg |
71 |
Q |
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| T |
116689 |
aatttactaaattatccttgattttaaattggtttgaatgggg |
116647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 11656931 - 11656873
Alignment:
| Q |
13 |
aatataaattaagtgtaatttactaaattatcctttattttaaattgatttaaatgggg |
71 |
Q |
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| T |
11656931 |
aataaaaattgagtgcaatttacaaaattctcctttattttaaattggttttaatgggg |
11656873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 29916098 - 29916142
Alignment:
| Q |
109 |
acacttgttaacttaaatcttaatatttttaggttggtctaagtt |
153 |
Q |
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| T |
29916098 |
acacttgctaacttgaaccttaatgtttttaggttggtctaagtt |
29916142 |
T |
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