View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19120_low_12 (Length: 237)
Name: NF19120_low_12
Description: NF19120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19120_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 39921335 - 39921493
Alignment:
| Q |
1 |
ttttggcagaaaactttatatttgaacataaaatgatttatgttttgttacattaacgaaagagtccttgaataataaatttcaatcttaaaatcaatgt |
100 |
Q |
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| T |
39921335 |
ttttggcaaaaaactttatatttaaacataaaatgatttatgttttgttacattgacgaaagagtccttgaataataaatttcaatcttaaaatcaatgt |
39921434 |
T |
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| Q |
101 |
gagatttagaagctctaatttttagcttgaagtaaacatcaattctatacagaaacaat |
159 |
Q |
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| T |
39921435 |
gagatttagaagctctaatttttagcttgaagtaaacatcaattctatacaaaaacaat |
39921493 |
T |
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Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 39923102 - 39923171
Alignment:
| Q |
153 |
aaacaatcaaacatgtcataattagttatacacatacacaattaattttgttctcttttaaaccaaacat |
222 |
Q |
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| T |
39923102 |
aaacaatcaaacatgtcataattagttatacacatatacaattaattttgttctcttttaaatcaaacat |
39923171 |
T |
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