View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19120_low_5 (Length: 386)

Name: NF19120_low_5
Description: NF19120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19120_low_5
NF19120_low_5
[»] chr5 (4 HSPs)
chr5 (13-369)||(32795339-32795689)
chr5 (159-369)||(19670640-19670849)
chr5 (262-369)||(32796346-32796453)
chr5 (243-341)||(26896578-26896676)
[»] scaffold0065 (1 HSPs)
scaffold0065 (159-369)||(34665-34873)
[»] chr6 (14 HSPs)
chr6 (166-369)||(11678810-11679008)
chr6 (224-364)||(27340619-27340758)
chr6 (224-364)||(27401359-27401498)
chr6 (244-349)||(13558009-13558114)
chr6 (243-349)||(2921875-2921981)
chr6 (224-346)||(2923172-2923295)
chr6 (224-325)||(13556018-13556119)
chr6 (243-334)||(16403529-16403619)
chr6 (170-331)||(11677130-11677290)
chr6 (240-307)||(22879999-22880066)
chr6 (243-337)||(16910129-16910223)
chr6 (321-368)||(11676986-11677033)
chr6 (240-307)||(22898114-22898181)
chr6 (243-353)||(14721695-14721804)
[»] chr7 (8 HSPs)
chr7 (224-357)||(11269939-11270072)
chr7 (224-349)||(7961767-7961892)
chr7 (159-269)||(11269753-11269862)
chr7 (224-279)||(36208004-36208059)
chr7 (282-352)||(1103145-1103215)
chr7 (169-269)||(11280342-11280442)
chr7 (315-364)||(40279382-40279430)
chr7 (249-333)||(1716668-1716752)
[»] chr1 (6 HSPs)
chr1 (224-349)||(22840959-22841084)
chr1 (224-349)||(22827041-22827166)
chr1 (224-324)||(22826646-22826746)
chr1 (167-279)||(20260903-20261014)
chr1 (159-209)||(26207059-26207109)
chr1 (243-331)||(24272755-24272843)
[»] chr3 (5 HSPs)
chr3 (166-357)||(25889606-25889789)
chr3 (224-353)||(30046404-30046534)
chr3 (224-335)||(37133785-37133896)
chr3 (312-364)||(25578998-25579051)
chr3 (260-333)||(31141410-31141483)
[»] chr4 (7 HSPs)
chr4 (224-337)||(27272573-27272687)
chr4 (169-357)||(50887366-50887545)
chr4 (224-353)||(53472556-53472683)
chr4 (230-353)||(53469673-53469796)
chr4 (243-330)||(10395972-10396059)
chr4 (243-335)||(32015167-32015259)
chr4 (243-353)||(29235155-29235265)
[»] chr2 (5 HSPs)
chr2 (224-353)||(8761186-8761316)
chr2 (246-353)||(37965516-37965624)
chr2 (256-344)||(10128496-10128584)
chr2 (288-349)||(15140798-15140859)
chr2 (243-327)||(25550091-25550174)
[»] scaffold0007 (1 HSPs)
scaffold0007 (258-331)||(260213-260286)
[»] chr8 (1 HSPs)
chr8 (243-299)||(42001908-42001964)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 369
Target Start/End: Original strand, 32795339 - 32795689
Alignment:
Q  13 aatattaagaacaaaaataaccttaatcaaatttcccttttttaaatatatctcataaaaatatctgttgaagaatgaaaagggaataatctgtcaaact 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32795339 aatattaagaacaaaaataaccttaatcaaatttcccttttttaaatatatctcataaaaatatctgttgaagaatgaagagggaataatctgtcaaact 32795438  T
Q  113 atttgtgttgaaacatctgaactaaatgctagagttgagcataaactat-aaaaaacagaaagaaaggaattgtataatttaattaataattacatattt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32795439 atttgtgttgaaacatctgaactaaatgctagagttgagcataaactataaaaaaacagaaagaaaggaattgtataatttaattaataattacata-tt 32795537  T
Q  212 acatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaag 311  Q
    ||||      | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||    
T  32795538 acat------gatagtagaggtaacgttagttatagcaaaacccactaactattggtacaagtaatactgacacgcaagacttttattaatatgactaag 32795631  T
Q  312 cctttgcatatttcttcatattatccaatgtgggacattttctcattattattgatat 369  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32795632 tctttgcatatttcttcatattatccgatgtgggacattttctcattattattgatat 32795689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 159 - 369
Target Start/End: Complemental strand, 19670849 - 19670640
Alignment:
Q  159 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccact 258  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||| ||  || |||| |   |||||||||||||| ||| ||||||||||||||||    
T  19670849 tataagaaacagaaagaaaggaattgtataatgtaattaataattacagatc-acgtatactgaatagtagaggtaacgctagctatagcaaaacccact 19670751  T
Q  259 aactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcatt 358  Q
    |||||||||| ||||||||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  19670750 aactattggtacaagtaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattatcttatgtgagacattttctcatt 19670651  T
Q  359 attattgatat 369  Q
    |||||||||||    
T  19670650 attattgatat 19670640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 262 - 369
Target Start/End: Original strand, 32796346 - 32796453
Alignment:
Q  262 tattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcattatt 361  Q
    |||| ||||||| |||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  32796346 tatttgtgcaaggaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattatccgatctgggacattttctcattatt 32796445  T
Q  362 attgatat 369  Q
    ||||||||    
T  32796446 attgatat 32796453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 341
Target Start/End: Complemental strand, 26896676 - 26896578
Alignment:
Q  243 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatg 341  Q
    ||||||||||| || ||||||||  |||||| |||||  ||||||||    |||||| ||||| | ||| |||||||||||||||| |||| |||||||    
T  26896676 tatagcaaaacacattaactattaatgcaagaaatactaacacacaatgtctttatttatatggccaagtctttgcatatttcttcctattctccaatg 26896578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 159 - 369
Target Start/End: Complemental strand, 34873 - 34665
Alignment:
Q  159 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccact 258  Q
    ||||| ||||||||||||| ||||||||||||  |||| |||||||||  |||||| ||| ||  ||||||| ||||  |||| ||||||||||||||||    
T  34873 tataagaaacagaaagaaatgaattgtataatgaaattgataattacaagtttacaaatactaaatagtagaagtaatattagctatagcaaaacccact 34774  T
Q  259 aactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcatt 358  Q
    |||||||||||| | ||||||  |||||  ||||||||||| |||||||||||| ||| ||||||| || |||||||| |||||| ||||||||||||||    
T  34773 aactattggtgctaataatactaacaca--agacttttatttatatgactaagcattttcatatttttttatattatctaatgtgagacattttctcatt 34676  T
Q  359 attattgatat 369  Q
    |||||||||||    
T  34675 attattgatat 34665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 166 - 369
Target Start/End: Complemental strand, 11679008 - 11678810
Alignment:
Q  166 aacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactatt 265  Q
    ||||||||||||||||||| ||||| ||||| |||| |||||||| ||| ||| |   |||||||||||| | ||  |||||||||| ||||||    ||    
T  11679008 aacagaaagaaaggaattgaataatgtaattgataaatacatatt-acaaatactgaatagtagaggtaatgctaactatagcaaaatccacta----tt 11678914  T
Q  266 ggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcattattattg 365  Q
    ||||  || |||||  |||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11678913 ggtgttagaaatactaacacacaagagttttatttacatgaccaagcctttgcatatttcttcatattatccgatgtgggacattttctcattattattg 11678814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 224 - 364
Target Start/End: Original strand, 27340619 - 27340758
Alignment:
Q  224 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 323  Q
    ||||||| |||| | |||||||||||||||||||||||||||||| ||||  ||||  |||||||    ||||||| ||||||| |||||||||||||||    
T  27340619 tagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt--ttttatttatatgaccaagcctttgcatatt 27340716  T
Q  324 tcttcatattatccaatgtgggacatt-ttctcattattatt 364  Q
    |||||||||||||| |||||||||||| |||| |||||||||    
T  27340717 tcttcatattatccgatgtgggacattattctaattattatt 27340758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 224 - 364
Target Start/End: Original strand, 27401359 - 27401498
Alignment:
Q  224 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 323  Q
    ||||||| |||| | |||||||||||||||||||||||||||||| ||||  ||||  |||||||    ||||||| ||||||| |||||||||||||||    
T  27401359 tagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt--ttttatttatatgaccaagcctttgcatatt 27401456  T
Q  324 tcttcatattatccaatgtgggacatt-ttctcattattatt 364  Q
    |||||||||||||| |||||||||||| |||| |||||||||    
T  27401457 tcttcatattatccgatgtgggacattattctaattattatt 27401498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 244 - 349
Target Start/End: Original strand, 13558009 - 13558114
Alignment:
Q  244 atagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtg 343  Q
    ||||||||| |||||||||||||||||| | |||||  ||||||||  |||||||| ||||||| ||||||||||||||||||||||||||||| |||||    
T  13558009 atagcaaaatccactaactattggtgcatgaaatactaacacacaatgcttttatttatatgaccaagcctttgcatatttcttcatattatccgatgtg 13558108  T
Q  344 ggacat 349  Q
    ||||||    
T  13558109 ggacat 13558114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 243 - 349
Target Start/End: Original strand, 2921875 - 2921981
Alignment:
Q  243 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgt 342  Q
    ||||||||||||||||||||||||||||||| |||||  ||||| |||||||||||| |||| || ||| | ||||||||||||||||||||||| ||||    
T  2921875 tatagcaaaacccactaactattggtgcaagaaatactaacacataagacttttatttatattaccaagtcattgcatatttcttcatattatccgatgt 2921974  T
Q  343 gggacat 349  Q
    | |||||    
T  2921975 gagacat 2921981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 224 - 346
Target Start/End: Original strand, 2923172 - 2923295
Alignment:
Q  224 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcc-tttgcatat 322  Q
    ||||||| ||||  |||| |||| ||| |||||||||||||| ||||||| | |||  |||||||||||||||||| ||||||| ||||| |||||||||    
T  2923172 tagtagaagtaatattagctataacaagacccactaactattagtgcaagaagtactaacacacaagacttttatttatatgaccaagccttttgcatat 2923271  T
Q  323 ttcttcatattatccaatgtggga 346  Q
    ||||||||||||||| ||||||||    
T  2923272 ttcttcatattatccgatgtggga 2923295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 224 - 325
Target Start/End: Original strand, 13556018 - 13556119
Alignment:
Q  224 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 323  Q
    ||||||| |||| | ||| |||||||||||||| |||||||||||||||| |||||  ||||||||| |||||||| ||||||| |||||||||||||||    
T  13556018 tagtagaagtaatgctagctatagcaaaacccagtaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaagcctttgcatatt 13556117  T
Q  324 tc 325  Q
    ||    
T  13556118 tc 13556119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 334
Target Start/End: Complemental strand, 16403619 - 16403529
Alignment:
Q  243 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatatta 334  Q
    |||||||||| ||||||| ||||||||||| |||||   |||||||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  16403619 tatagcaaaatccactaattattggtgcaaataatataaacacacaagacttttatttatatgactaagtc-ttgcatatttcttcatatta 16403529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 170 - 331
Target Start/End: Complemental strand, 11677290 - 11677130
Alignment:
Q  170 gaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggtg 269  Q
    ||||||||||||||| ||||| | |||||||| ||||   ||||| |||  |  |||||||||||| | ||| ||||| ||||||| |||||||||||||    
T  11677290 gaaagaaaggaattgaataatgtcattaataaatacaagattacaaatacgaa-tagtagaggtaatgctagctataggaaaacccgctaactattggtg 11677192  T
Q  270 caagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcata 331  Q
      || |||||  |||||||||| ||||||| ||||||  || ||||||||||||||||||||    
T  11677191 ttagaaatactaacacacaagagttttatttatatgatcaatcctttgcatatttcttcata 11677130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 22879999 - 22880066
Alignment:
Q  240 agttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgac 307  Q
    ||||||||||||||||||||| |||||||||||| ||||   |||||||| || |||||| |||||||    
T  22879999 agttatagcaaaacccactaattattggtgcaagaaatattaacacacaaaacctttatttatatgac 22880066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 337
Target Start/End: Original strand, 16910129 - 16910223
Alignment:
Q  243 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatcc 337  Q
    ||||||||||| ||| ||||||||| ||||  |||||  |||||||| ||||||||| |||   | ||| ||||||||||| |||||||||||||    
T  16910129 tatagcaaaacacacaaactattggcgcaacaaatactaacacacaatacttttatttataatgccaagtctttgcatattccttcatattatcc 16910223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 368
Target Start/End: Complemental strand, 11677033 - 11676986
Alignment:
Q  321 atttcttcatattatccaatgtgggacattttctcattattattgata 368  Q
    ||||||||||||||||| ||||| |||||||||  |||||||||||||    
T  11677033 atttcttcatattatccgatgtgagacattttcaaattattattgata 11676986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 22898114 - 22898181
Alignment:
Q  240 agttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgac 307  Q
    ||||||||||||||||||||| |||||||||||| ||||   ||||| || || |||||| |||||||    
T  22898114 agttatagcaaaacccactaattattggtgcaagaaatattaacacaaaaaacctttatttatatgac 22898181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 353
Target Start/End: Complemental strand, 14721804 - 14721695
Alignment:
Q  243 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgt 342  Q
    |||| ||||||||| ||||||||| |||||| |||||  | | ||||| |||||||| ||| | | || | ||||||||||||||  |||| ||| ||||    
T  14721804 tataacaaaacccattaactattgctgcaagaaatacttataaacaaggcttttatttataggccaaatc-tttgcatatttctttctattctccgatgt 14721706  T
Q  343 gggacattttc 353  Q
    |||||||||||    
T  14721705 gggacattttc 14721695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 224 - 357
Target Start/End: Complemental strand, 11270072 - 11269939
Alignment:
Q  224 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 323  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||||||| ||||||| || | |||  |||||    
T  11270072 tagtagaggtaacactagttatagcaaaacccactaactattggtgcaactaatactaacacacaaggcttttatttatatgaccaaacttttttatatt 11269973  T
Q  324 tcttcatattatccaatgtgggacattttctcat 357  Q
    |||||||||||||| |||||||||||||||||||    
T  11269972 tcttcatattatccgatgtgggacattttctcat 11269939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 224 - 349
Target Start/End: Complemental strand, 7961892 - 7961767
Alignment:
Q  224 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 323  Q
    ||||||| |||| | ||| ||||||||||||||||||||||||||||||| |||||  ||||||||| |||||||| ||||||| || ||||||||||||    
T  7961892 tagtagaagtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaaacctttgcatatt 7961793  T
Q  324 tcttcatattatccaatgtgggacat 349  Q
    |||||||||||| | |||||||||||    
T  7961792 tcttcatattatgcgatgtgggacat 7961767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 11269753 - 11269862
Alignment:
Q  159 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccact 258  Q
    ||||||||| ||||||||| |||||||||||| ||||| ||||||||| | ||||| ||| ||  |||||||||||||| ||| |||||||||||  |||    
T  11269753 tataaaaaatagaaagaaatgaattgtataatgtaattgataattacaga-ttacagatactaactagtagaggtaacgctagctatagcaaaacttact 11269851  T
Q  259 aactattggtg 269  Q
    |||||||||||    
T  11269852 aactattggtg 11269862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 36208059 - 36208004
Alignment:
Q  224 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaatac 279  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||    
T  36208059 tagtagagctaacgctagctatagcaaaacccactaactattggtgcaagaaatac 36208004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 1103215 - 1103145
Alignment:
Q  282 acacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacatttt 352  Q
    ||||||||| |||||||| ||||| | ||| |||| |||||||||||||||||||| ||||||||| ||||    
T  1103215 acacacaaggcttttatttatatggccaagtctttacatatttcttcatattatccgatgtgggacgtttt 1103145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 269
Target Start/End: Complemental strand, 11280442 - 11280342
Alignment:
Q  169 agaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggt 268  Q
    |||||||||| ||||||||||| ||||| ||||||||| |||     ||| |   |||||||||||||| ||| |||||||||||| |||||||||||||    
T  11280442 agaaagaaagaaattgtataatgtaattgataattacagattacgggatactgtctagtagaggtaacgctagctatagcaaaacctactaactattggt 11280343  T
Q  269 g 269  Q
    |    
T  11280342 g 11280342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 364
Target Start/End: Complemental strand, 40279430 - 40279382
Alignment:
Q  315 ttgcatatttcttcatattatccaatgtgggacattttctcattattatt 364  Q
    |||| |||||||||||| |||||||||||| ||||||||| |||||||||    
T  40279430 ttgcttatttcttcataatatccaatgtggaacattttct-attattatt 40279382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 333
Target Start/End: Original strand, 1716668 - 1716752
Alignment:
Q  249 aaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatatt 333  Q
    ||||| |||||||||||| |||||| ||||   ||||||||||| |||||| |||||   ||| |||| ||||||| ||||||||    
T  1716668 aaaactcactaactattgatgcaagaaatattaacacacaagacctttatttatatggtcaagtctttacatattttttcatatt 1716752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 224 - 349
Target Start/End: Complemental strand, 22841084 - 22840959
Alignment:
Q  224 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 323  Q
    ||||||| |||| | ||| ||||| ||||||||||||||||||||||||| |||||  ||||||||| ||||||||  |||||| |||||||||||||||    
T  22841084 tagtagaagtaatgctagctatagtaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttttatgaccaagcctttgcatatt 22840985  T
Q  324 tcttcatattatccaatgtgggacat 349  Q
    |||||||||||||| |||||||||||    
T  22840984 tcttcatattatccgatgtgggacat 22840959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 224 - 349
Target Start/End: Original strand, 22827041 - 22827166
Alignment:
Q  224 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 323  Q
    ||||||| |||| | ||| |||| |||||||||||||||||||||||||| ||||   ||||||||| |||||||| ||||||| || ||||||||||||    
T  22827041 tagtagaagtaatgctagctataacaaaacccactaactattggtgcaagaaatatgaacacacaaggcttttatttatatgaccaaacctttgcatatt 22827140  T
Q  324 tcttcatattatccaatgtgggacat 349  Q
    |||||||||||||| |||||||||||    
T  22827141 tcttcatattatccgatgtgggacat 22827166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 224 - 324
Target Start/End: Original strand, 22826646 - 22826746
Alignment:
Q  224 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 323  Q
    ||||||| |||| | ||| |||||||||| |||||||||||||||||||| |||||  ||||| ||| |||||||| ||||||| ||||||||||| |||    
T  22826646 tagtagaagtaatgctagctatagcaaaatccactaactattggtgcaagaaatactaacacataaggcttttatttatatgaccaagcctttgcagatt 22826745  T
Q  324 t 324  Q
    |    
T  22826746 t 22826746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 279
Target Start/End: Original strand, 20260903 - 20261014
Alignment:
Q  167 acagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattg 266  Q
    ||||||||||| | |||||||||| ||||||||||||||| | ||||||||| |   |||||||||||||| ||||||||||||||  || || ||||||    
T  20260903 acagaaagaaatggattgtataatgtaattaataattacaga-ttacatatactgaatagtagaggtaacgctagttatagcaaaattcattagctattg 20261001  T
Q  267 gtgcaagtaatac 279  Q
     |||||| |||||    
T  20261002 atgcaagaaatac 20261014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 26207059 - 26207109
Alignment:
Q  159 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatat 209  Q
    |||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  26207059 tataaagaatagaaagaaaggaattgtataatgtaattaataattacatat 26207109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 331
Target Start/End: Complemental strand, 24272843 - 24272755
Alignment:
Q  243 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcata 331  Q
    ||||| ||||| ||||||||||||||||||| |||||  ||||||||| | |||||  ||||    ||| |||||||||||||||||||    
T  24272843 tatagtaaaactcactaactattggtgcaagaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttcata 24272755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 166 - 357
Target Start/End: Complemental strand, 25889789 - 25889606
Alignment:
Q  166 aacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactatt 265  Q
    ||||||||||||||||||||||||| ||||| ||||        ||||| | | ||  || ||||||||  | ||| |||||||||||||||||||||||    
T  25889789 aacagaaagaaaggaattgtataatgtaattgataa--------ttacaaagactaaataatagaggtactgctagctatagcaaaacccactaactatt 25889698  T
Q  266 ggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcat 357  Q
    |||||||| |||||  ||| |||||||||||||| ||||||| || ||||||||||  ||||||| |||||| |||||||||||||||||||    
T  25889697 ggtgcaagaaatactaacatacaagacttttatttatatgaccaaacctttgcataactcttcatgttatccgatgtgggacattttctcat 25889606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 353
Target Start/End: Complemental strand, 30046534 - 30046404
Alignment:
Q  224 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcata-- 321  Q
    |||||||||||||| ||| |||||||||||| |||||||||| || |||| |||||  ||||||||  |||||||| |||||   ||| |||||||||      
T  30046534 tagtagaggtaacgctagctatagcaaaaccgactaactatt-gtacaagaaatactaacacacaaagcttttatttatatggtcaagtctttgcatatt 30046436  T
Q  322 tttcttcatattatccaatgtgggacattttc 353  Q
    ||| |||||||||||| || || |||||||||    
T  30046435 ttttttcatattatccgatatgagacattttc 30046404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 37133785 - 37133896
Alignment:
Q  224 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 323  Q
    |||||||| |||| |||||||||||||||  |||||||||||| || ||| |||||  | |||||||||||||||| ||| | ||||  ||| | |||||    
T  37133785 tagtagagttaacattagttatagcaaaattcactaactattgatgtaagaaatactaatacacaagacttttattcatacggctaaatcttcgtatatt 37133884  T
Q  324 tcttcatattat 335  Q
    | ||||||||||    
T  37133885 ttttcatattat 37133896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 25578998 - 25579051
Alignment:
Q  312 cctttgcatatttcttcatattatccaatgtgggacatt-ttctcattattatt 364  Q
    |||||||||||||||||||||||||| ||||| |||||| |||| |||||||||    
T  25578998 cctttgcatatttcttcatattatccgatgtgagacattattctaattattatt 25579051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 31141483 - 31141410
Alignment:
Q  260 actattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatatt 333  Q
    |||||||||| ||| |||||  |||| ||||||||||||| ||||| ||||  |||||||||||||||| ||||    
T  31141483 actattggtgtaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctatt 31141410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 224 - 337
Target Start/End: Complemental strand, 27272687 - 27272573
Alignment:
Q  224 tagtagaggtaacgttagttatagcaaaa-cccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatat 322  Q
    ||||||| |||| | ||| |||||||||| ||||||||||||||||||||| |||||  |||||||||||||||||| ||||||| || |||||||||||    
T  27272687 tagtagaagtaatgctagctatagcaaaaacccactaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaaacctttgcatat 27272588  T
Q  323 ttcttcatattatcc 337  Q
    |||||||||||||||    
T  27272587 ttcttcatattatcc 27272573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 169 - 357
Target Start/End: Original strand, 50887366 - 50887545
Alignment:
Q  169 agaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggt 268  Q
    |||||||||||||||||||||| ||||| ||||||||||||        | ||  ||||||||||||   ||| ||||||||||||||||||||||| ||    
T  50887366 agaaagaaaggaattgtataatgtaattgataattacatat--------actaaatagtagaggtaatactagctatagcaaaacccactaactattagt 50887457  T
Q  269 gcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcat 357  Q
    | ||| || ||| || |||||||| |||||| ||||| | |||||||||||||||| |||||||||| | ||| |||||||||||||||    
T  50887458 gtaagcaaaaccaacgcacaagacatttatttatatggccaagcctttgcatattt-ttcatattattcgatgcgggacattttctcat 50887545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 224 - 353
Target Start/End: Original strand, 53472556 - 53472683
Alignment:
Q  224 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 323  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||||||| | |||||  |||||||| ||||||||| ||||| | ||| |||||||||||    
T  53472556 tagtagaggtaacgctagctatagcaaaacccactaaccattggtgcatgaaatactaacacacaa-acttttatttatatggc-aagtctttgcatatt 53472653  T
Q  324 tcttcatattatccaatgtgggacattttc 353  Q
    ||||| |||||||| |||||| ||||||||    
T  53472654 tcttcgtattatccgatgtggaacattttc 53472683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 230 - 353
Target Start/End: Original strand, 53469673 - 53469796
Alignment:
Q  230 aggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttca 329  Q
    ||||||| || | ||||| |||| ||||||||||||| | |||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  53469673 aggtaacattggctatagtaaaatccactaactattgattcaagaaatactaacacacaagacttttatttatatgaccaagtctttgcatatttcttca 53469772  T
Q  330 tattatccaatgtgggacattttc 353  Q
    |||||||  |||| | ||||||||    
T  53469773 tattatctgatgtagaacattttc 53469796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 243 - 330
Target Start/End: Complemental strand, 10396059 - 10395972
Alignment:
Q  243 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcat 330  Q
    ||||||| |||||||||||||||| |||||| |||||  ||||||||| |||||||| ||||| |  || ||||||||||||||||||    
T  10396059 tatagcataacccactaactattgatgcaagaaatactaacacacaaggcttttatttatatggccgagtctttgcatatttcttcat 10395972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 335
Target Start/End: Complemental strand, 32015259 - 32015167
Alignment:
Q  243 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattat 335  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||| || |||||| || |  | ||| |||||||||| ||||| ||||||    
T  32015259 tatagcaaaacccactaactattggtgcaagaaatactaacacacaaaacctttatttatgttgccaagtctttgcatatatcttcctattat 32015167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 353
Target Start/End: Original strand, 29235155 - 29235265
Alignment:
Q  243 tatagcaaaacccactaactattggtgcaagtaat-accgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatg 341  Q
    |||||||||||| || ||||||||||||||| ||| ||  ||||||||| | |||||| ||||| | ||| |||||||||||| ||||||| |||| |||    
T  29235155 tatagcaaaacc-acgaactattggtgcaagaaattactaacacacaaggcctttatttatatggccaagtctttgcatattttttcatataatccgatg 29235253  T
Q  342 tgggacattttc 353  Q
    ||||| ||||||    
T  29235254 tgggatattttc 29235265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 224 - 353
Target Start/End: Original strand, 8761186 - 8761316
Alignment:
Q  224 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatga-ctaagcctttgcatat 322  Q
    |||||||| ||| | ||| |||| ||||| |||||||| ||||||||||| |||||  |||||||||||||||||| |||||| | |||  |||||||||    
T  8761186 tagtagagataatgctagctataacaaaatccactaacaattggtgcaagaaatactaacacacaagacttttatttatatgaccaaagtatttgcatat 8761285  T
Q  323 ttcttcatattatccaatgtgggacattttc 353  Q
    ||||||||||||||  |||||||||||||||    
T  8761286 ttcttcatattatctgatgtgggacattttc 8761316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 246 - 353
Target Start/End: Original strand, 37965516 - 37965624
Alignment:
Q  246 agcaaaacccactaactattggtgcaagtaataccgacacacaa-gacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgg 344  Q
    ||||||||||| |||||||||||||||| |||||  |||||||| |||||||||| ||||  | ||| ||||||||||||||||||||||||| |||||     
T  37965516 agcaaaacccattaactattggtgcaagaaatactaacacacaaagacttttatttatatatccaagtctttgcatatttcttcatattatccgatgtga 37965615  T
Q  345 gacattttc 353  Q
    |||||||||    
T  37965616 gacattttc 37965624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 10128584 - 10128496
Alignment:
Q  256 actaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgg 344  Q
    |||||||||||||||||| |||||  |||||||||||||||||| ||||||| ||| |||| |||||||||||||||| ||| ||||||    
T  10128584 actaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatattctccgatgtgg 10128496  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 15140859 - 15140798
Alignment:
Q  288 aagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacat 349  Q
    |||||||||||| ||||||| ||  |||| ||||||||||||| ||| || |||||||||||    
T  15140859 aagacttttatttatatgaccaaatctttacatatttcttcattttaaccgatgtgggacat 15140798  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 327
Target Start/End: Complemental strand, 25550174 - 25550091
Alignment:
Q  243 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttctt 327  Q
    ||||| |||| |||||||||||| || |||| |||||  |||||||||||||||||| ||||| | ||  |||| ||||||||||    
T  25550174 tataggaaaatccactaactattagtccaagaaatact-acacacaagacttttatttatatggccaaatctttacatatttctt 25550091  T

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Target: scaffold0007 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 331
Target Start/End: Original strand, 260213 - 260286
Alignment:
Q  258 taactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcata 331  Q
    |||||||||||||||| |||||  |||||||||  ||||||| || |||||||| |||||||||||||||||||    
T  260213 taactattggtgcaagaaatactaacacacaaggattttatttatttgactaagtctttgcatatttcttcata 260286  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 42001964 - 42001908
Alignment:
Q  243 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttatt 299  Q
    |||||||||||| |||||||||||||||||||| |||  ||||||||||||||||||    
T  42001964 tatagcaaaacctactaactattggtgcaagtattactaacacacaagacttttatt 42001908  T

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