View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19120_low_7 (Length: 329)
Name: NF19120_low_7
Description: NF19120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19120_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 23 - 318
Target Start/End: Complemental strand, 45390027 - 45389730
Alignment:
| Q |
23 |
ctgcatttatcctaatccagtgaacactttattcctcttcaatgtctaaaacttgtcactacttcaattgaggtagaacctctttaattnnnnnnnnt-- |
120 |
Q |
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| T |
45390027 |
ctgcatttatcctaatccggtgaacactttattcctcttcaatgtctaaaacttgtcactacttcaattgaggtagaacctctttaattaaaaaaaaaac |
45389928 |
T |
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| Q |
121 |
ctgatcattaatgacaatgttaatgttcagttgcatcagaatagaacacttaaatgcaagtgtggtatcgagggaatgaggtatctcaaaattttggtta |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45389927 |
ctgatcattaatgacaatgttaatgttcagttgcatcagaatagaagacttaaatgcaagtgtggtatcgagggaatgaggtatctcaaaattttggtta |
45389828 |
T |
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| Q |
221 |
cacctgcaaaaccgactaataaggtgagggaagcctctcacttaaacacattttcacgtcatttatcattcaatgagggacccaatacattcattcat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
45389827 |
cacctgcaaaaccgactaataaggtgagggaagcctctcacttaaacacattttcacgccatttatcattcaatgagggactcaatacattcattcat |
45389730 |
T |
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