View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19120_low_8 (Length: 327)
Name: NF19120_low_8
Description: NF19120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19120_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 48527087 - 48526791
Alignment:
| Q |
11 |
caaaggaaatgggaaatattcaagatgcaatcaaatggggaacagattattttttaaaagctagttgtagaagaaacaaattatatgttgaggtagggga |
110 |
Q |
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| T |
48527087 |
caaaggaaatgggaaatattcaagatgcaatcaaatggggaacagattattttttaaaagctagttctagaagaaacaaattatatgttgaggtagggga |
48526988 |
T |
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| Q |
111 |
cccagaggaagatcatcattgttgggctccaccagaaaaaatgaagacaaaaagatcggttaaagtcattgatagtaacacacccggtagtgagattgct |
210 |
Q |
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| T |
48526987 |
cccagaggaagatcatcattgttgggctccaccagaaaaaatgaagacaaaaagatcggttaaagtcattgatagtaacacacctggtagtgagattgct |
48526888 |
T |
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| Q |
211 |
tctgaaacggctgcagctatggcttcttcttccattgtttttagacatactgatcgtaaatatgctcgtcgtctcctcaacaaagcaaaattggtat |
307 |
Q |
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| T |
48526887 |
tctgaaacggctgcagctatggcttcttcttccattgtttttagacatactgatcgtaaatatgctcgtcgtctcctcaacaaagcaaaattggtat |
48526791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 7222467 - 7222175
Alignment:
| Q |
16 |
gaaatgggaaatattcaagatgcaatcaaatggggaacagattattttttaaaagctagttgtagaagaaacaaattatatgttgaggtaggggacccag |
115 |
Q |
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| T |
7222467 |
gaaatgggaaatattcaaaatgccattagatggggtactgattattttctgaaaactagttcccaaagaaatagattatatgtagaggtaggggacccag |
7222368 |
T |
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| Q |
116 |
aggaagatcatcattgttgggctccaccagaaaaaatgaagacaaaaagatcggttaaagtcattgatagtaacacacccggtagtgagattgcttctga |
215 |
Q |
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| T |
7222367 |
ttgatgatcaccattgttgggcaccaccggaaaatatgaagacaaagagaacagttaaattaattgatagtaacacacctggcactgagattgcagctga |
7222268 |
T |
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| Q |
216 |
aacggctgcagctatggcttcttcttccattgtttttagacatactgatcgtaaatatgctcgtcgtctcctcaacaaagcaaaattggtatg |
308 |
Q |
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||| |||| ||||||||| ||||||||||||||||||| ||| ||||| |||||| |||| ||||||||||| ||||||||||||||||| |
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| T |
7222267 |
aacttctgctgctatggctgcttcttccattgtttttaggcatgttgatcccaaatattctcgccgtctcctcaataaagcaaaattggtatg |
7222175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 90 - 301
Target Start/End: Original strand, 50305342 - 50305553
Alignment:
| Q |
90 |
attatatgttgaggtaggggacccagaggaagatcatcattgttgggctccaccagaaaaaatgaagacaaaaagatcggttaaagtcattgatagtaac |
189 |
Q |
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|||||||||| |||||||||||| || || ||||| | ||||||||| |||||||||| ||||||||||| ||| | |||| | ||||| |||||| |
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| T |
50305342 |
attatatgttaaggtaggggaccgagttgatgatcaccgttgttgggcaccaccagaaagtatgaagacaaagagaacatataaattaattgacagtaac |
50305441 |
T |
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| Q |
190 |
acacccggtagtgagattgcttctgaaacggctgcagctatggcttcttcttccattgtttttagacatactgatcgtaaatatgctcgtcgtctcctca |
289 |
Q |
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||||||||| | ||||||| ||||||| |||| | ||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| | |
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| T |
50305442 |
acacccggttttaagattgcagctgaaacttctgctgttatggctacttcttccattgtttttagacatgttgatcgtaaatatgctcgtcatctcctta |
50305541 |
T |
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| Q |
290 |
acaaagcaaaat |
301 |
Q |
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| T |
50305542 |
ataaagcaaaat |
50305553 |
T |
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