View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19121_low_1 (Length: 527)

Name: NF19121_low_1
Description: NF19121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19121_low_1
NF19121_low_1
[»] chr5 (15 HSPs)
chr5 (18-517)||(36202860-36203358)
chr5 (22-200)||(29006218-29006398)
chr5 (366-502)||(9851275-9851410)
chr5 (93-212)||(9851621-9851740)
chr5 (26-182)||(11042983-11043139)
chr5 (437-504)||(2022648-2022715)
chr5 (437-510)||(43378120-43378193)
chr5 (215-368)||(29006450-29006603)
chr5 (109-163)||(15205202-15205256)
chr5 (392-474)||(29006661-29006743)
chr5 (215-352)||(9851458-9851594)
chr5 (366-449)||(15205483-15205566)
chr5 (295-363)||(9080655-9080724)
chr5 (170-203)||(28270773-28270806)
chr5 (24-126)||(28274093-28274197)
[»] chr8 (7 HSPs)
chr8 (18-192)||(12729135-12729309)
chr8 (24-213)||(28696261-28696450)
chr8 (203-362)||(12729344-12729502)
chr8 (366-504)||(28695947-28696085)
chr8 (366-469)||(12729541-12729644)
chr8 (437-504)||(25953607-25953674)
chr8 (366-498)||(44729228-44729364)
[»] chr3 (14 HSPs)
chr3 (23-212)||(52653523-52653712)
chr3 (366-516)||(52653924-52654075)
chr3 (204-373)||(52653728-52653896)
chr3 (224-366)||(33709804-33709945)
chr3 (23-163)||(50914636-50914776)
chr3 (26-212)||(33709572-33709752)
chr3 (366-516)||(33709981-33710129)
chr3 (203-363)||(40574317-40574477)
chr3 (92-187)||(16729628-16729721)
chr3 (423-509)||(16729894-16729980)
chr3 (21-70)||(23686022-23686071)
chr3 (21-70)||(24058259-24058308)
chr3 (24-96)||(2257449-2257521)
chr3 (434-506)||(29827115-29827187)
[»] chr2 (7 HSPs)
chr2 (21-196)||(34681294-34681469)
chr2 (43-202)||(14219075-14219233)
chr2 (452-510)||(42779878-42779936)
chr2 (137-201)||(14891583-14891647)
chr2 (436-510)||(716045-716118)
chr2 (452-505)||(16272130-16272183)
chr2 (275-351)||(34681118-34681195)
[»] chr4 (22 HSPs)
chr4 (23-213)||(24129520-24129710)
chr4 (29-213)||(48780039-48780222)
chr4 (57-196)||(1516526-1516664)
chr4 (24-190)||(20251147-20251312)
chr4 (53-204)||(1494959-1495110)
chr4 (24-117)||(122829-122922)
chr4 (434-504)||(3415597-3415667)
chr4 (434-515)||(3425145-3425227)
chr4 (114-188)||(1533060-1533134)
chr4 (434-504)||(18736848-18736918)
chr4 (437-509)||(18670524-18670597)
chr4 (393-474)||(48779718-48779799)
chr4 (280-363)||(20251439-20251523)
chr4 (436-506)||(30020297-30020367)
chr4 (126-192)||(46324378-46324444)
chr4 (424-516)||(20251618-20251710)
chr4 (53-100)||(1533134-1533180)
chr4 (245-368)||(24391830-24391951)
chr4 (436-483)||(32429731-32429778)
chr4 (434-504)||(18716175-18716245)
chr4 (369-516)||(24129144-24129292)
chr4 (458-506)||(47071118-47071166)
[»] chr7 (12 HSPs)
chr7 (29-204)||(12239809-12239983)
chr7 (366-516)||(12239438-12239590)
chr7 (18-211)||(1840395-1840589)
chr7 (397-516)||(37469058-37469178)
chr7 (366-516)||(24870567-24870718)
chr7 (42-204)||(24870206-24870367)
chr7 (207-362)||(12239628-12239782)
chr7 (434-495)||(5436975-5437036)
chr7 (129-204)||(1829807-1829883)
chr7 (79-151)||(24533212-24533284)
chr7 (52-212)||(34091651-34091806)
chr7 (435-516)||(23756987-23757068)
[»] chr6 (7 HSPs)
chr6 (26-212)||(28612324-28612508)
chr6 (437-498)||(28611983-28612044)
chr6 (209-368)||(28612144-28612303)
chr6 (280-362)||(11931984-11932066)
chr6 (366-449)||(11932104-11932187)
chr6 (434-516)||(24075623-24075706)
chr6 (437-492)||(21937271-21937326)
[»] chr1 (16 HSPs)
chr1 (202-362)||(49053745-49053905)
chr1 (366-516)||(49061524-49061674)
chr1 (366-504)||(49053944-49054081)
chr1 (202-368)||(49061325-49061491)
chr1 (23-196)||(49053554-49053713)
chr1 (434-504)||(21432110-21432180)
chr1 (434-504)||(44524463-44524533)
chr1 (434-516)||(35624693-35624776)
chr1 (22-196)||(49061133-49061293)
chr1 (85-200)||(17458230-17458345)
chr1 (436-495)||(48366498-48366557)
chr1 (39-201)||(50059269-50059430)
chr1 (434-495)||(29681289-29681350)
chr1 (138-212)||(10917398-10917470)
chr1 (165-212)||(52282180-52282226)
chr1 (434-510)||(43358433-43358510)
[»] scaffold0007 (4 HSPs)
scaffold0007 (22-213)||(217508-217689)
scaffold0007 (29-201)||(215646-215816)
scaffold0007 (209-362)||(217708-217861)
scaffold0007 (434-495)||(217956-218017)


Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Original strand, 36202860 - 36203358
Alignment:
Q  18 attaattgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaat 117  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  36202860 attaattgtgagagaaatttttaaaatatatttgaaaagttgcaatggttaaaaagagaccttttagagaaaaggtgtaatgcttgacaattgaatcaat 36202959  T
Q  118 gtaatcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaattaca 217  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36202960 gtaaccattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaatcaca 36203059  T
Q  218 ttgttttgagtctaaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgtaagctacc 317  Q
    ||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36203060 ttggtgtgagtctaaattctgccgaaaattatactaaattattcgttctcttcttta-gtgtacgagagaatttgtcagaactttattttgtaagctacc 36203158  T
Q  318 attgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggattctattgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtg 417  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||    
T  36203159 attgcagatacacttgatgtgaacgtgcaagtcacgtcaaggattctattgcatccggttggcataactggtggggacgaatcgaacttaaaggttagtg 36203258  T
Q  418 tggcccacacacgccatggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaacacaggttctg 517  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  36203259 tggcccacacacgccatgaaatttatgtgcacaattcattatgttcatcttcatcatcttcttgatgaagttattacagcagaccccaacataggttctg 36203358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 29006218 - 29006398
Alignment:
Q  22 attgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttag---agaaaaggtgtaatgcttgacaactgaatcaatg 118  Q
    |||||||||||||||| ||||||||| || ||||||||||||  || |||||| | |||||||   | |||| |||||||| || || | |||| |||||    
T  29006218 attgtgagagaaatttccaaaatataattgaaaagttgcaataatt-aaaagagatcttttagaaaaaaaaaagtgtaatgttttacgattgaagcaatg 29006316  T
Q  119 taatcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacacttt 200  Q
    ||| |||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  29006317 taaccattcatgaacaaaatcttttaaagggttgtttcccttcaccaaatgacataagtttctctataaatagagacacttt 29006398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 366 - 502
Target Start/End: Complemental strand, 9851410 - 9851275
Alignment:
Q  366 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 465  Q
    |||||| ||||| || |||||||| |||| |||| |||| |||| ||||||||| |||||||||||  ||||||||||||||||||||||| ||||||||    
T  9851410 ttgcattcggttggcttaactggt-agggagaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcat 9851312  T
Q  466 cttcatcatattcttgatgaagttattgcagcagacc 502  Q
    ||||||||| || ||||| ||||||||||||||||||    
T  9851311 cttcatcatctttttgatcaagttattgcagcagacc 9851275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 9851740 - 9851621
Alignment:
Q  93 tgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaataga 192  Q
    |||| |||||||||| |||| |||| | | ||||||| |||||||||| | ||| |||||||||||||||||||| ||||||||||||||| ||||||||    
T  9851740 tgtattgcttgacaattgaagcaatctgaccattcataaacaaactctgtcaaatggttatttctcttcaccaaaagacataagtttctctgtaaataga 9851641  T
Q  193 gacactttggagacagaaaa 212  Q
    |||| ||||||| |||||||    
T  9851640 gacattttggaggcagaaaa 9851621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 26 - 182
Target Start/End: Complemental strand, 11043139 - 11042983
Alignment:
Q  26 tgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcat 125  Q
    |||| |||||||||||||||||||| ||||||| ||  ||||||| | | | |||||||||||||||||||||| ||| | | | ||||||| ||  |||    
T  11043139 tgagtgaaattttcaaaatatatttgaaaagtttcatcggttaaataaagatcttttagagaaaaggtgtaatgtttgtccatttaatcaatctagccat 11043040  T
Q  126 tcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctc 182  Q
    ||||||||||||||||| ||||||||  || ||| ||||||| ||||| ||||||||    
T  11043039 tcatgaacaaactctttcaaagggttgattatctacaccaaaggacatgagtttctc 11042983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 437 - 504
Target Start/End: Complemental strand, 2022715 - 2022648
Alignment:
Q  437 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccc 504  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  2022715 aatttatgtgcacatttcatcatgttcatcttcatcatcttcttgatcaagttattgcagcagacccc 2022648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 437 - 510
Target Start/End: Complemental strand, 43378193 - 43378120
Alignment:
Q  437 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaacaca 510  Q
    |||||||||||||| ||||| || |||||||||||||| ||| || | ||||||||||||||||||||||||||    
T  43378193 aatttatgtgcacacttcatcatattcatcttcatcatcttcatggtcaagttattgcagcagaccccaacaca 43378120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 215 - 368
Target Start/End: Original strand, 29006450 - 29006603
Alignment:
Q  215 acattgttttgagtctaaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgt-aagc 313  Q
    ||||| || ||||||||||||||||  | ||||||||||||| |||| |||| || | || ||| |||||| || ||| |||||||||||| ||| || |    
T  29006450 acattcttgtgagtctaaattctgctaaaaattatactaaatcattcattcttttttcta-gtgcacgagataagttgacagaactttattctgtaaaac 29006548  T
Q  314 taccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggattctattg 368  Q
    || ||||| |||||| |||| |||||| ||| | |||| ||||||||||| ||||    
T  29006549 taacattgacgatacgcttggtgtgaatgtgtatgtcatgtcaaggattccattg 29006603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 15205202 - 15205256
Alignment:
Q  109 tgaatcaatgtaatcattcatgaacaaactcttttaaagggttatttctcttcac 163  Q
    |||| ||||||||||||||||||||||||||||  ||| |||||||||| |||||    
T  15205202 tgaagcaatgtaatcattcatgaacaaactcttacaaatggttatttctattcac 15205256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 474
Target Start/End: Original strand, 29006661 - 29006743
Alignment:
Q  392 gggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcatcttcatcat 474  Q
    ||||||||||||| |||| ||||||||| | |||||||||  || |||||||||||||  ||||| || |||||||| |||||    
T  29006661 gggcgaatcgaacctaaaagttagtgtgtctcacacacgctttgaaatttatgtgcactcttcatcatattcatcttgatcat 29006743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 352
Target Start/End: Complemental strand, 9851594 - 9851458
Alignment:
Q  215 acattgttttgagtctaaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgtaagct 314  Q
    ||||| || |||||| |||||||||| | ||| ||||||||| | || |||| |||| ||| || || ||||||| || || ||||||||| |||||       
T  9851594 acattattgtgagtcaaaattctgccaaaaataatactaaatcagtctttcttttctctag-tgcacaagagaatgtgacaaaactttattctgtaaaac 9851496  T
Q  315 accattgtcgatacacttgatgtgaacgtgcaagtcac 352  Q
    |||||||||||||| |||| |||||| |||||| ||||    
T  9851495 accattgtcgatacgcttggtgtgaatgtgcaaatcac 9851458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 15205483 - 15205566
Alignment:
Q  366 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcac 449  Q
    |||||||| ||  |||||||||||| || |||||||||| | || ||||||||| |||||||||||  || |||||||| ||||    
T  15205483 ttgcatccagtcggcataactggtggggacgaatcgaacctcaaagttagtgtgtcccacacacgctttgaaatttatgggcac 15205566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 363
Target Start/End: Complemental strand, 9080724 - 9080655
Alignment:
Q  295 agaactttattttgtaagctaccattg-tcgatacacttgatgtgaacgtgcaagtcacgtcaaggattc 363  Q
    ||||||||||||||||| ||||||||| || ||||  || ||||||| |||||||| |||||||| ||||    
T  9080724 agaactttattttgtaaactaccattgatctatacgtttaatgtgaatgtgcaagttacgtcaagaattc 9080655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 28270806 - 28270773
Alignment:
Q  170 acataagtttctctataaatagagacactttgga 203  Q
    ||||||||||||||||||||||||| ||||||||    
T  28270806 acataagtttctctataaatagagatactttgga 28270773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 28274197 - 28274093
Alignment:
Q  24 tgtgagagaaattttcaaaatata--tttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaa 121  Q
    ||||||||||| || |||||||||  |||  ||||||||||||||| || |  |||||||||| |||| | |||| |||||||| | |||| ||||||||    
T  28274197 tgtgagagaaacttccaaaatataaatttggaaagttgcaatggttgaatatgaaccttttagtgaaacgatgtattgcttgactattgaaacaatgtaa 28274098  T
Q  122 tcatt 126  Q
     ||||    
T  28274097 ccatt 28274093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 12729135 - 12729309
Alignment:
Q  18 attaattgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaat 117  Q
    |||| ||||||||||||||| ||||||||||||  |||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||| ||||    
T  12729135 attatttgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaatagagaccttttagagaaaaggtgtaatgctcgacaattgaagcaat 12729234  T
Q  118 gtaatcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaataga 192  Q
     ||| ||||||||| ||||||||| ||||| ||| ||||||||||||| | ||||||| ||||||| ||||||||    
T  12729235 ataaccattcatgagcaaactcttctaaagagttgtttctcttcaccacaggacataaatttctctgtaaataga 12729309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 24 - 213
Target Start/End: Complemental strand, 28696450 - 28696261
Alignment:
Q  24 tgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatc 123  Q
    |||||||| |||||| ||||||| |   |||||||||||||| |||| ||| | ||||||||||||| ||||||||||| |||| |||| |||||||| |    
T  28696450 tgtgagagtaatttttaaaatatttcgaaaaagttgcaatgggtaaatagagatcttttagagaaaatgtgtaatgcttaacaattgaagcaatgtaacc 28696351  T
Q  124 attcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaat 213  Q
    |||||||||||||||||| ||||||| | |||||||||||||||  ||||||||||||| ||||||||||||||||||||  ||||||||    
T  28696350 attcatgaacaaactcttctaaagggatgtttctcttcaccaaagaacataagtttctccataaatagagacactttggatgcagaaaat 28696261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 203 - 362
Target Start/End: Original strand, 12729344 - 12729502
Alignment:
Q  203 agacagaaaattacattgttttgagtctaaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaacttt 302  Q
    ||||||||||| |||||||| || ||| |||||||||||| ||||||||||||| |||| |||| |||| ||| || ||||||||| ||| |||||||||    
T  12729344 agacagaaaatcacattgttgtgtgtcaaaattctgccgaaaattatactaaataattctttcttttctctag-tgcacgagagaaattgacagaacttt 12729442  T
Q  303 attttgtaagctaccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggatt 362  Q
    |||  |||| |||| ||||||||||  |||| |||||| |||||||||| ||||||||||    
T  12729443 attcagtaaactacaattgtcgatatgcttggtgtgaatgtgcaagtcatgtcaaggatt 12729502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 366 - 504
Target Start/End: Complemental strand, 28696085 - 28695947
Alignment:
Q  366 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 465  Q
    ||||||| ||||  ||||||||||||||||||||| ||| |||| ||||||||| |||||||||||  ||||||||||| |||   ||||| ||||||||    
T  28696085 ttgcatctggttgacataactggtgagggcgaatcaaacctaaaagttagtgtgtcccacacacgctttggaatttatgcgcattcttcatcatgttcat 28695986  T
Q  466 cttcatcatattcttgatgaagttattgcagcagacccc 504  Q
     |||||||| |||||| | ||||||||||| || |||||    
T  28695985 attcatcatcttcttggtcaagttattgcaacaaacccc 28695947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 366 - 469
Target Start/End: Original strand, 12729541 - 12729644
Alignment:
Q  366 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 465  Q
    |||||||||||| ||||||||||||  ||||||||| || |||| ||||||||| ||||||||| |  ||||||| ||||| ||  ||||| ||||||||    
T  12729541 ttgcatccggttggcataactggtggaggcgaatcgtacctaaaggttagtgtgtcccacacactctttggaattcatgtgtacttttcatcatgttcat 12729640  T
Q  466 cttc 469  Q
    ||||    
T  12729641 cttc 12729644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 437 - 504
Target Start/End: Original strand, 25953607 - 25953674
Alignment:
Q  437 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccc 504  Q
    |||||||||||||| ||||| || ||||||||||| || |||||| | ||||||||||| ||||||||    
T  25953607 aatttatgtgcacacttcatcatattcatcttcattatcttcttggttaagttattgcatcagacccc 25953674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 498
Target Start/End: Original strand, 44729228 - 44729364
Alignment:
Q  366 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattca----ttatgt 461  Q
    |||||||||||| |||||||| |   ||| |||| |||| |||| ||||||||  |||||||||||  ||||||||||||||||  ||||    | ||||    
T  44729228 ttgcatccggttggcataactcgcaggggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcattcatgt 44729327  T
Q  462 tcatcttcatcatattcttgatgaagttattgcagca 498  Q
    |||| ||||| || |||||||| ||||||||| ||||    
T  44729328 tcattttcattatcttcttgatcaagttattgtagca 44729364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 5e-48; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 52653523 - 52653712
Alignment:
Q  23 ttgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaat 122  Q
    ||||||||||||||| ||||||||||||  |||||||||||| ||||| | | ||||||||| ||||||||||| || ||||||| |||  ||||||||     
T  52653523 ttgtgagagaaatttccaaaatatatttggaaagttgcaatgattaaataaataccttttagtgaaaaggtgtattgtttgacaattgatgcaatgtaac 52653622  T
Q  123 cattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaa 212  Q
    |||||||||||||||||||||||| |||| | ||||||||||||| |||| ||||||||||||| | | ||||||||||||| |||||||    
T  52653623 cattcatgaacaaactcttttaaatggttgtgtctcttcaccaaaggacacaagtttctctatagacaaagacactttggaggcagaaaa 52653712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 366 - 516
Target Start/End: Original strand, 52653924 - 52654075
Alignment:
Q  366 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 465  Q
    |||||||||||| ||||||||||||||||||||| |||| |||| ||||||||| |||||||||||  ||||||||||||||||| ||||| ||||||||    
T  52653924 ttgcatccggttggcataactggtgagggcgaattgaacctaaaggttagtgtgtcccacacacgctttggaatttatgtgcacacttcatcatgttcat 52654023  T
Q  466 cttcatcatattcttgatgaagttattgcagcagacccc-aacacaggttct 516  Q
     |||||||| |||||||| |||||||||| ||| ||||| ||||||||||||    
T  52654024 tttcatcatcttcttgatcaagttattgccgcaaaccccaaacacaggttct 52654075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 204 - 373
Target Start/End: Original strand, 52653728 - 52653896
Alignment:
Q  204 gacagaaaattacattgttttgagtctaaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaacttta 303  Q
    ||||||||||||||||||| ||||| |||||||||| || ||||||||||||| |||| | || |||| ||| || |||||  || ||| ||||||||||    
T  52653728 gacagaaaattacattgttgtgagtttaaattctgctgaaaattatactaaatcattcttacttttctctag-tgcacgaggaaaattgacagaacttta 52653826  T
Q  304 ttttgtaagctaccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggattctattgcatcc 373  Q
    || ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  52653827 ttctgtaaactaccattgtcgatacacttgatgtgaatgtgcaagtcacgtcaaggattccattgtatcc 52653896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 224 - 366
Target Start/End: Original strand, 33709804 - 33709945
Alignment:
Q  224 tgagtctaaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgtaagctaccattgtc 323  Q
    |||||||||||| |||||| ||||||||||||| |||| |||| |||| ||| || || |||||||||| |||||||||||| ||||| |||||||||||    
T  33709804 tgagtctaaattttgccgaaaattatactaaatcattctttcttttctctag-tgcaccagagaatttgacagaactttattctgtaaactaccattgtc 33709902  T
Q  324 gatacacttgatgtgaacgtgcaagtcacgtcaaggattctat 366  Q
    ||||| |||| |||||| |||||||||||||||||||||||||    
T  33709903 gatacgcttggtgtgaatgtgcaagtcacgtcaaggattctat 33709945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 50914776 - 50914636
Alignment:
Q  23 ttgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaat 122  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||| ||||| ||     
T  50914776 ttgttagagaaattttcaaaatatatttgaaaagttgcaatggttaaatagagaccttttagagtaaaggtgtaatgcttgacaattgaagcaatgcaac 50914677  T
Q  123 cattcatg-aacaaactcttttaaagggttatttctcttcac 163  Q
    |||||||| |||||||||||  ||| |||| |||||||||||    
T  50914676 cattcatgaaacaaactcttccaaa-ggttttttctcttcac 50914636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 33709572 - 33709752
Alignment:
Q  26 tgagagaaattttcaaaata---tatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaa--ggtgtaatgcttgacaactgaatcaatgta 120  Q
    |||||||||||| |||||||   |||||  ||||||||||||||||||| || |||||||| | ||||  |||||||||||| |||| |||| |||||||    
T  33709572 tgagagaaatttccaaaataatatatttggaaagttgcaatggttaaaa-gagaccttttataaaaaaaaggtgtaatgctttacaattgaagcaatgta 33709670  T
Q  121 atcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaa 212  Q
    |          ||||| ||||| |||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  33709671 a----------acaaaatctttcaaagggttctttcccttcaccaaaggacataagtttctctataaatagagacactttggaggcagaaaa 33709752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 366 - 516
Target Start/End: Original strand, 33709981 - 33710129
Alignment:
Q  366 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 465  Q
    ||||||||||||  |||||||||||  || ||||||| | |||| ||||||||| |||||||||||  ||||||||| ||||||| ||||| |||||| |    
T  33709981 ttgcatccggttgacataactggtggaggtgaatcgatcctaaaggttagtgtgtcccacacacgctttggaattta-gtgcacacttcatcatgttctt 33710079  T
Q  466 cttcatcatattcttgatgaagttattgcagcagaccccaacacaggttct 516  Q
    | | ||||| |||||| | ||| ||||||||||||||||||||||||||||    
T  33710080 cat-atcattttcttggtcaagatattgcagcagaccccaacacaggttct 33710129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 363
Target Start/End: Complemental strand, 40574477 - 40574317
Alignment:
Q  203 agacagaaaattacattgttttgagtctaaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaacttt 302  Q
    ||||| ||||| ||||| || |||||| |||||||||||| ||| ||| ||||| |||| |||| |||| || ||| ||||||||| ||| |||||||||    
T  40574477 agacacaaaatcacattcttgtgagtcaaaattctgccgaaaataatattaaatcattctttcttttctcta-gtgcacgagagaaattgacagaacttt 40574379  T
Q  303 attttgtaagctaccattg-tcgatacacttgatgtgaacgtgcaagtcacgtcaaggattc 363  Q
    ||| ||||| ||| ||||| | ||||| |||  |||||| |||||||||||||||| |||||    
T  40574378 attctgtaaactatcattgattgatacgcttcgtgtgaatgtgcaagtcacgtcaaagattc 40574317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 16729628 - 16729721
Alignment:
Q  92 gtgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataa 187  Q
    ||||||| |||||| | |||| ||||||||| ||||||||| |||||||||| ||| ||| ||||||||||||||| ||||| | |||||||||||    
T  16729628 gtgtaatacttgactattgaagcaatgtaataattcatgaagaaactctttt-aagagttgtttctcttcaccaaaagacat-actttctctataa 16729721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 423 - 509
Target Start/End: Original strand, 16729894 - 16729980
Alignment:
Q  423 cacacacgccatggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaacac 509  Q
    |||||||||  || |||| ||||||||| || || ||||||||||||||| | || ||||| |||||||||||||||||||| ||||    
T  16729894 cacacacgctttgaaattaatgtgcacactttatcatgttcatcttcatcttcttattgatcaagttattgcagcagaccccgacac 16729980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 23686022 - 23686071
Alignment:
Q  21 aattgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaa 70  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  23686022 aattgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaa 23686071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 24058259 - 24058308
Alignment:
Q  21 aattgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaa 70  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  24058259 aattgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaa 24058308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 2257521 - 2257449
Alignment:
Q  24 tgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgta 96  Q
    ||||| ||||||||  ||||||||||| ||||||||||||| ||||| ||| ||| |||||||||||| ||||    
T  2257521 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccatttagagaaaagatgta 2257449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 506
Target Start/End: Complemental strand, 29827187 - 29827115
Alignment:
Q  434 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaa 506  Q
    |||||||||||| || | ||||| ||  ||||||||||||| |||||| |  |||||||||||||||||||||    
T  29827187 tggaatttatgttcaaacttcatcatagtcatcttcatcattttcttggtcgagttattgcagcagaccccaa 29827115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 34681469 - 34681294
Alignment:
Q  21 aattgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgta 120  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||||| | ||||||||||||||||| |||||||| ||||||| |||| ||||||     
T  34681469 aattgtgagagaaattttcaaaatatatttggaatgttgcaatggttaaacataaaccttttagagaaaaagtgtaatgtttgacaattgaagcaatgtt 34681370  T
Q  121 atcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagaca 196  Q
    | |||| ||||||||||||||  |||| ||| ||| ||||| ||||| ||||||| ||||||||||||||| ||||    
T  34681369 accattgatgaacaaactcttcaaaagagttgtttttcttccccaaaagacataaatttctctataaatagggaca 34681294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 43 - 202
Target Start/End: Complemental strand, 14219233 - 14219075
Alignment:
Q  43 atatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaactcttt 142  Q
    |||||||| ||| |||||||| |||||| ||||| |||| |||||||| ||| ||||||| |||| |||| ||||||||||  |||||||| ||||||||    
T  14219233 atatatttgaaatgttgcaatagttaaatagaaatcttt-agagaaaatgtgcaatgctttacaattgaagcaatgtaatcggtcatgaaccaactcttt 14219135  T
Q  143 taaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttgg 202  Q
     |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14219134 caaagtgttgtttctcttcaccaaatggcataagtttctctataaatagagacactttgg 14219075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 452 - 510
Target Start/End: Complemental strand, 42779936 - 42779878
Alignment:
Q  452 ttcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaacaca 510  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||    
T  42779936 ttcattatgttcatcttcatcatcttcttggtcaagttattgcagcagaccccaacaca 42779878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 14891583 - 14891647
Alignment:
Q  137 ctcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttg 201  Q
    |||||| |||| ||| | ||||| |||||||||||||| |||| ||||||| |||||||||||||    
T  14891583 ctctttcaaagagttgtatctctgcaccaaatgacatatgtttttctataagtagagacactttg 14891647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 510
Target Start/End: Complemental strand, 716118 - 716045
Alignment:
Q  436 gaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaacaca 510  Q
    ||||||||||| ||  ||||| || ||||| |||||||| |||||| | |||||||||||||||||| |||||||    
T  716118 gaatttatgtgtacgcttcatcatattcat-ttcatcatcttcttggtcaagttattgcagcagacctcaacaca 716045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 505
Target Start/End: Complemental strand, 16272183 - 16272130
Alignment:
Q  452 ttcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccca 505  Q
    ||||| ||||||||||| ||||| |||||  | |||||||||||||||||||||    
T  16272183 ttcatcatgttcatctttatcatcttcttagtcaagttattgcagcagacccca 16272130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 34681195 - 34681118
Alignment:
Q  275 ggtgtacgagagaatttgtcagaactttattttgtaagctaccattg-tcgatacacttgatgtgaacgtgcaagtca 351  Q
    |||| ||||||||| ||| || |||||||||  |||| ||| ||||| ||||||| ||||||||||| ||||||||||    
T  34681195 ggtgaacgagagaaattgacaaaactttattacgtaaactatcattgatcgatacgcttgatgtgaatgtgcaagtca 34681118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 7e-44; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 24129710 - 24129520
Alignment:
Q  23 ttgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaat 122  Q
    |||||||||||||| |||||||||||||  ||||| |||||||||||| | |  | |||| ||| ||||||||| ||||||| || |||| ||||||||     
T  24129710 ttgtgagagaaattatcaaaatatatttagaaagtcgcaatggttaaatataggctttttggaggaaaggtgtattgcttgataattgaagcaatgtaac 24129611  T
Q  123 cattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaat 213  Q
    |||||||||||||||||||  ||| ||||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||| || |||||    
T  24129610 cattcatgaacaaactcttccaaatggttattttccttaaccaaatgacataagtttctctataaatagagacactctggaggcaaaaaat 24129520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 29 - 213
Target Start/End: Complemental strand, 48780222 - 48780039
Alignment:
Q  29 gagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattca 128  Q
    ||||||||||||||||||||||  |||||||||||| ||||| | | | |||||||||||||||| ||||| ||||||| |||| |||| |||  |||||    
T  48780222 gagaaattttcaaaatatatttggaaagttgcaatgattaaaca-agatcttttagagaaaaggtataatgtttgacaattgaagcaatataactattca 48780124  T
Q  129 tgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaat 213  Q
    |||| ||| |||||| || |||| ||||||| ||||||| ||| | ||||| |||||||||| ||| ||||||||| ||||||||    
T  48780123 tgaataaattcttttcaaaggttgtttctctacaccaaaagacttgagtttatctataaataaagatactttggaggcagaaaat 48780039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 57 - 196
Target Start/End: Complemental strand, 1516664 - 1516526
Alignment:
Q  57 ttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaactcttttaaagggttatttc 156  Q
    ||||||||||||||| || || |||||||||||||||||| ||||| | || |||  |||| ||| |||||||||||||| ||||| |||||||||||||    
T  1516664 ttgcaatggttaaaa-gagacattttagagaaaaggtgtagtgctttagaaatgacgcaatataaccattcatgaacaaaatctttcaaagggttatttc 1516566  T
Q  157 tcttcaccaaatgacataagtttctctataaatagagaca 196  Q
      |||||||||||||||||||||||||| |||||||||||    
T  1516565 cgttcaccaaatgacataagtttctctagaaatagagaca 1516526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 20251147 - 20251312
Alignment:
Q  24 tgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatc 123  Q
    ||||||||||||||| |||||||||||  ||||||||||| |||||| ||| | ||||||||||||| ||||| || |||| || |||| ||||||||      
T  20251147 tgtgagagaaatttttaaaatatatttggaaagttgcaattgttaaatagagatcttttagagaaaaagtgtattgtttgataattgaaacaatgtaact 20251246  T
Q  124 attcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaata 190  Q
    |||||||||| |||||| |||||  ||| ||| |||| |||||| ||||||||||||||||||||||    
T  20251247 attcatgaac-aactctcttaaatagttgtttttctttaccaaaggacataagtttctctataaata 20251312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 1495110 - 1494959
Alignment:
Q  53 aaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaact-cttttaaagggtt 151  Q
    ||||||||||||||||||| || ||| |||||||||||||||||| |||| |||  |||| |||| ||| |||||||||||||| | |||| ||||| ||    
T  1495110 aaagttgcaatggttaaaa-gagaccatttagagaaaaggtgtaaagctttacagttgaagcaatataaccattcatgaacaaaattctttcaaaggttt 1495012  T
Q  152 atttctcttcaccaaatgacataagtttctctataaatagagacactttggag 204  Q
     ||||  |||||||||||||||||||||||||||||| ||||||| |||||||    
T  1495011 gtttccgttcaccaaatgacataagtttctctataaaaagagacattttggag 1494959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 122829 - 122922
Alignment:
Q  24 tgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaat 117  Q
    |||||||||||||| |||| ||||||| |||||||||||| |||||| |||||| |||||||||||| ||||| |||||||||| |||| ||||    
T  122829 tgtgagagaaatttccaaagtatatttgaaaagttgcaatagttaaatagaaacattttagagaaaatgtgtattgcttgacaattgaaacaat 122922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 434 - 504
Target Start/End: Original strand, 3415597 - 3415667
Alignment:
Q  434 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccc 504  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||||| | ||||||||||||||||||||    
T  3415597 tggaatttatgtgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgcagcagacccc 3415667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 434 - 515
Target Start/End: Original strand, 3425145 - 3425227
Alignment:
Q  434 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcaga-ccccaacacaggttc 515  Q
    ||||||||||||||||| || || ||||||||||||||||| |||||| | |||||||||||||||| |||||||||||||||    
T  3425145 tggaatttatgtgcacactttatcatgttcatcttcatcatcttcttggtcaagttattgcagcagatccccaacacaggttc 3425227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 1533134 - 1533060
Alignment:
Q  114 caatgtaatcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaa 188  Q
    |||| ||| |||| ||||||||| ||||| |||||||| |||| ||||| |||||||||||||||||||||||||    
T  1533134 caatataaccatttatgaacaaaatctttcaaagggttgtttcccttcatcaaatgacataagtttctctataaa 1533060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 434 - 504
Target Start/End: Complemental strand, 18736918 - 18736848
Alignment:
Q  434 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccc 504  Q
    ||||||||||||||||| ||||| | ||||||||| ||||| |||||||  |||||||| |||||||||||    
T  18736918 tggaatttatgtgcacacttcatcaagttcatcttaatcatcttcttgaccaagttattacagcagacccc 18736848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 437 - 509
Target Start/End: Complemental strand, 18670597 - 18670524
Alignment:
Q  437 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagac-cccaacac 509  Q
    |||||||||||||| ||||| ||||||||||| ||||| |||||| | ||||||||||| ||||| ||||||||    
T  18670597 aatttatgtgcacacttcatcatgttcatctttatcatcttcttggtcaagttattgcaacagacgcccaacac 18670524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 474
Target Start/End: Complemental strand, 48779799 - 48779718
Alignment:
Q  393 ggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcatcttcatcat 474  Q
    |||||||||||| |||| ||||||||  |||||||||||  || ||||||| |||||| ||||| ||||||||||| |||||    
T  48779799 ggcgaatcgaacataaaggttagtgtatcccacacacgctttgaaatttatatgcacacttcatcatgttcatctttatcat 48779718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 20251439 - 20251523
Alignment:
Q  280 acgagagaatttgtcagaactttattttgtaagctaccattg-tcgatacacttgatgtgaacgtgcaagtcacgtcaaggattc 363  Q
    ||||||||| ||| |||||||||||| ||||| ||| ||||| ||||||||||||||||||| || |||| ||| |||| |||||    
T  20251439 acgagagaaattgacagaactttattatgtaaactatcattgatcgatacacttgatgtgaatgtacaaggcacatcaatgattc 20251523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 506
Target Start/End: Original strand, 30020297 - 30020367
Alignment:
Q  436 gaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaa 506  Q
    |||||||| |||||| ||||| ||  ||||||||||||| |||||| | |||||||||||||||| |||||    
T  30020297 gaatttatatgcacacttcatcatagtcatcttcatcatcttcttggtcaagttattgcagcagatcccaa 30020367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 46324378 - 46324444
Alignment:
Q  126 tcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaataga 192  Q
    |||||||||||||||| ||||| ||| ||||||||||| | | ||||||||||| |||||| |||||    
T  46324378 tcatgaacaaactcttctaaagagttgtttctcttcacaagaggacataagtttttctatatataga 46324444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 516
Target Start/End: Original strand, 20251618 - 20251710
Alignment:
Q  424 acacacgccatggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaacacaggttct 516  Q
    ||||||||  || |||||||||| ||  ||||| ||||||||||||||||| |||||  | ||  |||| |||||||||||||||||| ||||    
T  20251618 acacacgctttgaaatttatgtgtactcttcatcatgttcatcttcatcatcttcttagtcaaactattacagcagaccccaacacagattct 20251710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 1533180 - 1533134
Alignment:
Q  53 aaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgc 100  Q
    ||||||||||||||||||| || |||| ||||||||||||||||||||    
T  1533180 aaagttgcaatggttaaaa-gagacctattagagaaaaggtgtaatgc 1533134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 368
Target Start/End: Original strand, 24391830 - 24391951
Alignment:
Q  245 attatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgtaagctaccattgtcgatacacttgatgtgaacgtg 344  Q
    |||||||||||| |||| |||| |||| ||| || | ||||||| ||| || ||||||||| ||||| ||| ||||||||||||  ||| |||| | |||    
T  24391830 attatactaaatcattctttcttttctctag-tgcatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtg-atgtg 24391927  T
Q  345 caagtcacgtcaaggattctattg 368  Q
    ||||||||  ||||||||| ||||    
T  24391928 caagtcacaccaaggattccattg 24391951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 483
Target Start/End: Original strand, 32429731 - 32429778
Alignment:
Q  436 gaatttatgtgcacaattcattatgttcatcttcatcatattcttgat 483  Q
    ||||||||||||||| ||||| |||||||||||||||||  |||||||    
T  32429731 gaatttatgtgcacacttcatcatgttcatcttcatcatcatcttgat 32429778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 504
Target Start/End: Complemental strand, 18716245 - 18716175
Alignment:
Q  434 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccc 504  Q
    |||||||||||| |||| ||||| | ||||||||| ||||| ||||||   |||||||| |||||||||||    
T  18716245 tggaatttatgtacacacttcatcaagttcatcttaatcatcttcttggccaagttattacagcagacccc 18716175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 516
Target Start/End: Complemental strand, 24129292 - 24129144
Alignment:
Q  369 catccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcatctt 468  Q
    |||| |||| |||||||||||| ||| ||||| || |||||  ||| |||| ||| |||| ||  ||||||||||||||||  ||||| || |||||| |    
T  24129292 catctggttggcataactggtgggggagaatcaaagttaaagattaatgtgtcccgcacatgctttggaatttatgtgcacttttcatcatattcatcat 24129193  T
Q  469 catcatattcttgatgaagttattgcagcagacc-ccaacacaggttct 516  Q
    ||||   |||||||| || |||||  ||| |||| |||||||| |||||    
T  24129192 catcgccttcttgatcaaattattatagctgacctccaacacatgttct 24129144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 47071166 - 47071118
Alignment:
Q  458 atgttcatcttcatcatattcttgatgaagttattgcagcagaccccaa 506  Q
    ||||||||||||||||| |||||  | ||||||||| ||||||||||||    
T  47071166 atgttcatcttcatcatcttcttagtcaagttattgtagcagaccccaa 47071118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 29 - 204
Target Start/End: Complemental strand, 12239983 - 12239809
Alignment:
Q  29 gagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattca 128  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | | ||||||||| ||||| ||||| |||||||||| |||  |||||||| ||||||    
T  12239983 gagaaatttccaaaatatatttgaaa-gttgcaatggttaaagaaagaccttttagtgaaaaagtgtattgcttgacaattgatgcaatgtaaccattca 12239885  T
Q  129 tgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggag 204  Q
    |||||||||||||| ||| ||||    ||||| | |||| || ||||||||||||||||||| |||||||||||||    
T  12239884 tgaacaaactctttcaaatggttgcggctcttgatcaaaggatataagtttctctataaataaagacactttggag 12239809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 366 - 516
Target Start/End: Complemental strand, 12239590 - 12239438
Alignment:
Q  366 ttgcatccggtttg-cataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttca 464  Q
    |||||||||||||| ||||||||||| ||||||||||||| |||| |||| |||| |||||||||||  || |||||||||||||| ||||| || ||||    
T  12239590 ttgcatccggtttgacataactggtgggggcgaatcgaacctaaaggttaatgtgtcccacacacgctttgaaatttatgtgcacacttcatcatattca 12239491  T
Q  465 tcttcatcatattcttgatgaagttattgcagcagacc-ccaacacaggttct 516  Q
    || ||||||| ||||| || |||||||||||||| ||| |||||||| |||||    
T  12239490 tcatcatcatcttcttaatcaagttattgcagcaaacctccaacacaagttct 12239438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 1840395 - 1840589
Alignment:
Q  18 attaattgtgagagaaattttcaaaatata--tttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatca 115  Q
    |||||||||||||| |||||| ||||||||  ||| |||||||||||||||||| | || |||||||||  ||| |||||||| ||||| || | ||  |    
T  1840395 attaattgtgagagtaatttttaaaatataaatttgaaaagttgcaatggttaaga-gagaccttttagt-aaatggtgtaattcttgataattcaagta 1840492  T
Q  116 atgtaatcattcatgaacaaactcttttaaagggttatttctcttcaccaaatg-acataagtttctctataaatagagacactttggagacagaaa 211  Q
     ||||| |||||||||||||| |||| ||||  ||| | | |||||| |||| | ||||||||||||||||||||||||||| ||||||| ||||||    
T  1840493 ttgtaaccattcatgaacaaattcttctaaaaagttgtctttcttcatcaaaaggacataagtttctctataaatagagacattttggaggcagaaa 1840589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 397 - 516
Target Start/End: Original strand, 37469058 - 37469178
Alignment:
Q  397 aatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcag 496  Q
    |||| ||| |||| ||||||||| ||||||||| |  || |||||||||||||| || || ||||||||||||||||| |||||||| |||||||||| |    
T  37469058 aatcaaacctaaaggttagtgtgtcccacacacactttgaaatttatgtgcacatttaatcatgttcatcttcatcatcttcttgatcaagttattgctg 37469157  T
Q  497 caga-ccccaacacaggttct 516  Q
    || | ||||||||||||||||    
T  37469158 caaacccccaacacaggttct 37469178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 516
Target Start/End: Original strand, 24870567 - 24870718
Alignment:
Q  366 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 465  Q
    |||||||||||| |||||||||||  |||||||||||||||||| |||||  || |||| ||| |   ||||||||||||| |  |||||| ||||  ||    
T  24870567 ttgcatccggttggcataactggtaggggcgaatcgaacttaaaggttagcatgtcccatacaagatgtggaatttatgtgtattattcatcatgtctat 24870666  T
Q  466 cttcatcatattcttgatgaagttattgcagcaga-ccccaacacaggttct 516  Q
    ||||||||| ||||| || |||||||||||||| | |||||||| |||||||    
T  24870667 cttcatcatcttcttcatcaagttattgcagcaaacccccaacataggttct 24870718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 24870206 - 24870367
Alignment:
Q  42 aatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaactctt 141  Q
    |||| |||| |||||||||||| |||||||  | ||||||||| |||| |||||||||| |||  | |||| || | ||| | || || |||||||||||    
T  24870206 aataaatttgaaaagttgcaatagttaaaat-agaccttttagtgaaagggtgtaatgcgtgatcaatgaagcagtctaaccgtttattaacaaactctt 24870304  T
Q  142 ttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggag 204  Q
     ||||  |||||||||||||||   | ||||||| ||||||||||||||||||||||||||||    
T  24870305 ctaaatagttatttctcttcactgtaagacataattttctctataaatagagacactttggag 24870367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 207 - 362
Target Start/End: Complemental strand, 12239782 - 12239628
Alignment:
Q  207 agaaaattacattgttttgagtctaaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattt 306  Q
    ||||||| |||||||| || ||   ||||||||||| ||| ||| |||||||||| ||||  ||| ||| | ||| ||| || ||| || |||||||||     
T  12239782 agaaaatcacattgttgtgtgttagaattctgccgaaaataatattaaattattctttcttatctctag-tatactagataaattgacaaaactttattc 12239684  T
Q  307 tgtaagctaccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggatt 362  Q
    || || |||||||||||||||| |||| |||||| |||||||||||||||||||||    
T  12239683 tggaaactaccattgtcgatacgcttggtgtgaatgtgcaagtcacgtcaaggatt 12239628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 434 - 495
Target Start/End: Original strand, 5436975 - 5437036
Alignment:
Q  434 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgca 495  Q
    |||||||||| |||||| ||||| ||||||||||||||||| |||||| | |||||||||||    
T  5436975 tggaatttatttgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgca 5437036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 1829883 - 1829807
Alignment:
Q  129 tgaacaaactcttttaaagggttatttctcttcacc-aaatgacataagtttctctataaatagagacactttggag 204  Q
    ||||| ||||||||||||| ||| ||| |||| | | ||| |||| ||||||||||||||||||||||| |||||||    
T  1829883 tgaacgaactcttttaaagagttgtttatctttatcgaaaggacacaagtttctctataaatagagacattttggag 1829807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 24533212 - 24533284
Alignment:
Q  79 ttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaactcttttaaagggtt 151  Q
    ||||||||||||  ||||||| || |||| || | |||||||| ||||||||||||||| |||| ||||||||    
T  24533212 ttttagagaaaatatgtaatgtttaacaattgtagcaatgtaaccattcatgaacaaacactttcaaagggtt 24533284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 212
Target Start/End: Complemental strand, 34091806 - 34091651
Alignment:
Q  52 aaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaactcttttaaagggtt 151  Q
    ||||||| ||||||||||| | | |||||||| | |||| |||||||| |||| || ||||  | |||||||||||||||| |||     |||||| |||    
T  34091806 aaaagttacaatggttaaataaagaccttttaaa-aaaatgtgtaatgtttgataattgaagtagtgtaatcattcatgaaaaaa----attaaagagtt 34091712  T
Q  152 atttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaa 212  Q
     ||||| |||| ||||   ||||| ||||| |||||||| ||||||||  |||||||||||    
T  34091711 gtttctgttcatcaaagatcataaatttctttataaataaagacacttgagagacagaaaa 34091651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 516
Target Start/End: Complemental strand, 23757068 - 23756987
Alignment:
Q  435 ggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaacacaggttct 516  Q
    ||||||||||| |||  ||||| ||||||||||||||||| |||||  | ||||| ||||  || ||||||||| |||||||    
T  23757068 ggaatttatgttcactcttcatcatgttcatcttcatcattttcttagtcaagttcttgctccaaaccccaacaaaggttct 23756987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 7e-35; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 26 - 212
Target Start/End: Complemental strand, 28612508 - 28612324
Alignment:
Q  26 tgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcat 125  Q
    |||||||||||| |||||||||||| |||  ||| |||||||||| |||  |||||||||| ||||||||| || ||||||| |||| |||| |||  ||    
T  28612508 tgagagaaatttccaaaatatatttaaaa--ttgtaatggttaaatagaggccttttagagcaaaggtgtattgtttgacaattgaagcaatataacaat 28612411  T
Q  126 tcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaa 212  Q
    ||||||||||||||||  ||| | || ||| ||||||||||||||||||||||||| |||||| | ||||||||| ||| |||||||    
T  28612410 tcatgaacaaactcttccaaatgattgtttttcttcaccaaatgacataagtttctttataaagatagacactttcgaggcagaaaa 28612324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 437 - 498
Target Start/End: Complemental strand, 28612044 - 28611983
Alignment:
Q  437 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagca 498  Q
    |||||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||    
T  28612044 aatttatgtgcacacttcatcatgttcatattcatcatcttcttgatcaagttattgcagca 28611983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 209 - 368
Target Start/End: Complemental strand, 28612303 - 28612144
Alignment:
Q  209 aaaattacattgttttgagtctaaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttg 308  Q
    ||||| ||||| || |||||| |||||||||||| ||||||||||||| |||| ||||  ||| || ||| ||||| | | ||| |||||| || |||||    
T  28612303 aaaatcacattcttgtgagtcgaaattctgccgaaaattatactaaatcattctttcttatctcta-gtgcacgaggggaattgacagaacattgttttg 28612205  T
Q  309 taagctaccattg-tcgatacacttgatgtgaacgtgcaagtcacgtcaaggattctattg 368  Q
    ||  |||||||||  |||||  |||| |||||| || ||||||||||||||||||| ||||    
T  28612204 tatactaccattgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattg 28612144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 362
Target Start/End: Original strand, 11931984 - 11932066
Alignment:
Q  280 acgagagaatttgtcagaactttattttgtaagctaccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggatt 362  Q
    ||||||||||||| ||||| |||||| | ||| ||||||||||||||| ||||| ||||||   ||||||||| |||||||||    
T  11931984 acgagagaatttgacagaattttattctataaactaccattgtcgataaacttggtgtgaataagcaagtcacatcaaggatt 11932066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 11932104 - 11932187
Alignment:
Q  366 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcac 449  Q
    |||||||||||| |||||||| ||| ||||||||| ||| |||| ||||||||| || ||||| ||  || |||||||||||||    
T  11932104 ttgcatccggttggcataactagtgggggcgaatcaaacctaaaggttagtgtgtccaacacatgctttgaaatttatgtgcac 11932187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 516
Target Start/End: Complemental strand, 24075706 - 24075623
Alignment:
Q  434 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccc-aacacaggttct 516  Q
    |||||||||| |||||| ||  | || |||||||| ||||| ||||| || |||||||||||||||||||| ||||||||||||    
T  24075706 tggaatttatatgcacactttgtcatattcatctttatcatcttcttaatcaagttattgcagcagacccctaacacaggttct 24075623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 492
Target Start/End: Complemental strand, 21937326 - 21937271
Alignment:
Q  437 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttatt 492  Q
    |||||||||||||| ||||| || |||||||||||||| |||||| | ||||||||    
T  21937326 aatttatgtgcacacttcatcatattcatcttcatcatcttcttggtcaagttatt 21937271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 202 - 362
Target Start/End: Original strand, 49053745 - 49053905
Alignment:
Q  202 gagacagaaaattacattgttttgagtctaaattctgccgataa-ttatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaact 300  Q
    |||||| ||||| |||||||| || |||  ||||||||| | || ||||||||||| |||| ||||||||| ||| || ||||| ||| ||| |||||||    
T  49053745 gagacataaaatcacattgttgtgtgtcataattctgccaaaaaattatactaaatcattctttctcttctctag-tgcacgagggaaattggcagaact 49053843  T
Q  301 ttattttgtaagctaccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggatt 362  Q
    ||||||||||| |||||||||||||||  |||| |||||| |||||||||||||||||||||    
T  49053844 ttattttgtaaactaccattgtcgatatgcttggtgtgaatgtgcaagtcacgtcaaggatt 49053905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 366 - 516
Target Start/End: Original strand, 49061524 - 49061674
Alignment:
Q  366 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 465  Q
    |||||||  ||| |||||||||||| ||||||||||||| ||||   ||||||  |||||||||||  | ||||||||||||||| ||||| ||||||||    
T  49061524 ttgcatctagttggcataactggtgggggcgaatcgaacctaaagactagtgtttcccacacacgctttagaatttatgtgcacacttcatcatgttcat 49061623  T
Q  466 cttcatcatattcttgatgaagttattgcagcagaccccaacacaggttct 516  Q
    |||| |||| || ||| | || ||||||||||||||||||||||| |||||    
T  49061624 cttcttcatctttttggtaaaattattgcagcagaccccaacacaagttct 49061674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 366 - 504
Target Start/End: Original strand, 49053944 - 49054081
Alignment:
Q  366 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 465  Q
    |||||||| ||| | |||||||||| ||||||||||||| |||| ||||||||  |||||||||||  ||||||||||||| ||| ||||| ||||||||    
T  49053944 ttgcatccagttggtataactggtgggggcgaatcgaacctaaaggttagtgtttcccacacacgcattggaatttatgtgtacacttcatcatgttcat 49054043  T
Q  466 cttcatcatattcttgatgaagttattgcagcagacccc 504  Q
    |||| |||| || ||| | || |||| ||||||||||||    
T  49054044 cttcttcatctttttggt-aaattatcgcagcagacccc 49054081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 368
Target Start/End: Original strand, 49061325 - 49061491
Alignment:
Q  202 gagacagaaaattacattgttttgagtctaaattctgccgataa-ttatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaact 300  Q
    |||||| ||||| |||||||| || |||  ||||||||||| || ||||||||||| |||| |||| |||| ||| || ||||| ||| ||| || ||||    
T  49061325 gagacataaaatcacattgttgtgtgtcataattctgccgaaaaattatactaaatcattctttcttttctctag-tgcacgagggaaattgacaaaact 49061423  T
Q  301 ttattttgtaagctaccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggattctattg 368  Q
    ||||| ||||| |||||||||||||||   ||| |||||| |||||| ||||||||||||||| ||||    
T  49061424 ttattctgtaaactaccattgtcgatatgtttggtgtgaatgtgcaaatcacgtcaaggattccattg 49061491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 49053554 - 49053713
Alignment:
Q  23 ttgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaat 122  Q
    ||||||||||||||| ||||||||||||  |||||||||||||||||| | | ||||||||| ||||||||||| ||              ||||||||     
T  49053554 ttgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagaccttttagtgaaaaggtgtattg--------------caatgtaac 49053639  T
Q  123 cattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagaca 196  Q
    ||||||| |||||||||||| ||| | || | ||||||||||||| ||||||||||| | |||||||| |||||    
T  49053640 cattcataaacaaactctttcaaatgattgtgtctcttcaccaaaggacataagtttttatataaatatagaca 49053713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 434 - 504
Target Start/End: Original strand, 21432110 - 21432180
Alignment:
Q  434 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccc 504  Q
    ||||||||||||||||| ||||  ||||||||||||||||| |||||| | ||||||||||||||||||||    
T  21432110 tggaatttatgtgcacacttcagcatgttcatcttcatcatcttcttggtcaagttattgcagcagacccc 21432180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 434 - 504
Target Start/End: Original strand, 44524463 - 44524533
Alignment:
Q  434 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccc 504  Q
    ||||||||||||||| | ||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  44524463 tggaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttattgcaacagacccc 44524533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 434 - 516
Target Start/End: Complemental strand, 35624776 - 35624693
Alignment:
Q  434 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcaga-ccccaacacaggttct 516  Q
    ||||||||||||||||| ||| | || |||||||||||||| |||||| | |||||||||||||||| |||||||||| |||||    
T  35624776 tggaatttatgtgcacacttcgtaatattcatcttcatcatcttcttggtcaagttattgcagcagacccccaacacaagttct 35624693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 49061133 - 49061293
Alignment:
Q  22 attgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaa 121  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||||| | | ||||||||| ||| ||||||| ||              ||||||||    
T  49061133 attgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagaccttttagtgaataggtgtattg--------------caatgtaa 49061218  T
Q  122 tcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagaca 196  Q
     ||||||| |||||| ||||| |||   || | ||||||||| ||| ||||||||||||| ||||||||||||||    
T  49061219 ccattcataaacaaattctttcaaataattgtgtctcttcacgaaaggacataagtttctatataaatagagaca 49061293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 200
Target Start/End: Original strand, 17458230 - 17458345
Alignment:
Q  85 agaaaaggtgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctcta 184  Q
    |||||||  |||||| ||||||| | |  |||||||| |||||| ||||||| ||||| ||   ||| ||||||||||||||| ||||||||||| ||||    
T  17458230 agaaaagaagtaatgtttgacaattcatgcaatgtaaccattcaagaacaaattctttcaagtagttgtttctcttcaccaaaggacataagtttatcta 17458329  T
Q  185 taaatagagacacttt 200  Q
    ||||| |||| |||||    
T  17458330 taaattgagatacttt 17458345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 436 - 495
Target Start/End: Original strand, 48366498 - 48366557
Alignment:
Q  436 gaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgca 495  Q
    |||||||| |||||| ||||| ||||||||||||||||| |||||||| |||||||||||    
T  48366498 gaatttatttgcacacttcatcatgttcatcttcatcatcttcttgatcaagttattgca 48366557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 201
Target Start/End: Original strand, 50059269 - 50059430
Alignment:
Q  39 caaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaact 138  Q
    |||||||||||| |||| ||||| | |||||| ||| || || ||| ||| |||||||||||||||  |   || |||||||| ||||| | ||||| ||    
T  50059269 caaaatatatttaaaaaattgcagtcgttaaatagagacattatagtgaagaggtgtaatgcttgaacatcaaagcaatgtaaccattcgtaaacaagct 50059368  T
Q  139 cttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttg 201  Q
    ||||||||  | | ||||| ||||| ||| |||||||| || |||||||||| ||||||||||    
T  50059369 cttttaaaaag-tgtttctgttcactaaaagacataagattttctataaataaagacactttg 50059430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 434 - 495
Target Start/End: Complemental strand, 29681350 - 29681289
Alignment:
Q  434 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgca 495  Q
    |||||||||| |||||| ||||| ||||||||||||||||| |||||| | |||||||||||    
T  29681350 tggaatttatttgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgca 29681289  T

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Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 10917398 - 10917470
Alignment:
Q  138 tcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaa 212  Q
    ||||| |||| ||| | ||||||||| ||| |||||||||||||||||||||  ||||||||||||| |||||||    
T  10917398 tctttcaaagagttgtatctcttcactaaaggacataagtttctctataaat--agacactttggaggcagaaaa 10917470  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 52282226 - 52282180
Alignment:
Q  165 aaatgacataagtttctctataaatagagacactttggagacagaaaa 212  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||||||    
T  52282226 aaatgacataaatttatctataaatagagacacttt-gagacagaaaa 52282180  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 510
Target Start/End: Complemental strand, 43358510 - 43358433
Alignment:
Q  434 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcaga-ccccaacaca 510  Q
    ||||||| ||||||||  ||||| ||  ||||||||||||| |||||||| || ||||||||| ||| ||||||||||    
T  43358510 tggaattcatgtgcacgcttcatcatagtcatcttcatcatcttcttgatcaatttattgcagtagatccccaacaca 43358433  T

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Target: scaffold0007 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 217508 - 217689
Alignment:
Q  22 attgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaa 121  Q
    |||||||||||||||| | ||||||| |  ||||||||||||||||||| ||| | ||||||||||||| | ||||| ||||||||     |||| | ||    
T  217508 attgtgagagaaatttccgaaatataataaaaaagttgcaatggttaaatagagatcttttagagaaaatgcgtaattcttgacaa-----tcaaagcaa 217602  T
Q  122 tcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaat 213  Q
    |   ||||| ||||||||||| ||| |||| ||| |||| ||||||||||||||||||||||||||||  ||||||||| ||| ||||||||    
T  217603 t---tcatggacaaactctttcaaaaggttgtttatctttaccaaatgacataagtttctctataaat--agacactttagaggcagaaaat 217689  T

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Target: scaffold0007; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 215646 - 215816
Alignment:
Q  29 gagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattca 128  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||| | |||||  ||||||  ||||||| ||||| | ||||    ||||| ||||||    
T  215646 gagaaatttccaaaatatatttagaaagttgcaatggttaaatagagatcttttgaagaaaatatgtaatgtttgacgattgaagt--tgtaaccattca 215743  T
Q  129 tgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttg 201  Q
    | ||||||  | |||||||||| |||||||||||||||| ||||||||||| |||||| | ||||||||||||    
T  215744 taaacaaatccatttaaagggtcatttctcttcaccaaaggacataagtttttctatagacagagacactttg 215816  T

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Target: scaffold0007; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 209 - 362
Target Start/End: Original strand, 217708 - 217861
Alignment:
Q  209 aaaattacattgttttgagtctaaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttg 308  Q
    ||||| |||||||| || |||  ||||||||||| ||| || |||||| |||| |||| |||| ||| |  ||||||||| ||| |||||| ||||||||    
T  217708 aaaatcacattgttgtgtgtcagaattctgccgaaaataattctaaataattctttcttttctctagttc-acgagagaaattggcagaacattattttg 217806  T
Q  309 taagctaccattg-tcgatacacttgatgtgaacgtgcaagtcacgtcaaggatt 362  Q
    ||| ||||||||| |||||||||||| |||||| ||||||||| | |||||||||    
T  217807 taaactaccattgatcgatacacttggtgtgaatgtgcaagtctcttcaaggatt 217861  T

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Target: scaffold0007; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 434 - 495
Target Start/End: Original strand, 217956 - 218017
Alignment:
Q  434 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgca 495  Q
    |||||||||||||||| |||||||||||||||||||||||| || ||  | |||||||||||    
T  217956 tggaatttatgtgcactattcattatgttcatcttcatcatcttttttgtcaagttattgca 218017  T

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