View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19121_low_10 (Length: 274)
Name: NF19121_low_10
Description: NF19121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19121_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 18839890 - 18840132
Alignment:
| Q |
10 |
attattctttaacaaagtacaaaaatgggtataggcaacaaaactatcaagagttaaatgtctctgtagtgattgaaagatctctcagctgttggggatc |
109 |
Q |
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| T |
18839890 |
attattctttaacaaagtacaaaaatgg-tataagcaacaaaactatcaagagttaaatgtctgtgtagtgattgaaagatctctcagctgttggggatc |
18839988 |
T |
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| Q |
110 |
cacctcggaaggcgatctcgtgagggcacactgtgcagttgttgtttttgggaaagcaatgacatcactggttgaattagcaccagctagcaacataacc |
209 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
18839989 |
caccttggaaggcgatctcgtgagggcacactgtgcagttgttgtttttgggaaagcaatgacatccctgattgaattagcaccagctagcaacataacc |
18840088 |
T |
|
| Q |
210 |
aatctgtctaaaccaaaagctatgcctcctgtatttgatatata |
253 |
Q |
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| T |
18840089 |
aatctgtccaaaccaaaagctatgcctcctgtatttgatatata |
18840132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 10 - 258
Target Start/End: Original strand, 18850965 - 18851217
Alignment:
| Q |
10 |
attattctttaacaaagtacaaaaatgggtataggcaacaaaactatcaagagttaaatg----tctctgtagtgattgaaagatctctcagctgttggg |
105 |
Q |
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||||||||||| || |||||||||||||||||| |||| | |||||| |||||||||||| ||| || ||||||||||||||||||||||||||||| |
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| T |
18850965 |
attattctttaccagagtacaaaaatgggtataagcaatataactatgaagagttaaatgcctatctatgcagtgattgaaagatctctcagctgttggg |
18851064 |
T |
|
| Q |
106 |
gatccacctcggaaggcgatctcgtgagggcacactgtgcagttgttgtttttgggaaagcaatgacatcactggttgaattagcaccagctagcaacat |
205 |
Q |
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| T |
18851065 |
gatccacctcggaaggcgatctcgtgagggcacactgtgcagttgttgtttttgggaaagcaatgacatccctgattgaattagcaccagctagcatcat |
18851164 |
T |
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| Q |
206 |
aaccaatctgtctaaaccaaaagctatgcctcctgtatttgatatataataac |
258 |
Q |
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| T |
18851165 |
aaccaatctgtccagaccaaaagctatgcctcctgcatttgatatataataac |
18851217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 50010642 - 50010890
Alignment:
| Q |
10 |
attattctttaacaaagtacaaaaatgggtataggcaacaaaactatcaagagttaaatg----tctctgtagtgattgaaagatctctcagctgttggg |
105 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||| |||||| |||||||||| | ||| ||||||||||||||||||| |||||||||||| |
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| T |
50010642 |
attattctttaacagagtacaaaaatgggtataagcaacagaactatgaagagttaaacgcctatctatgtagtgattgaaagatctttcagctgttggg |
50010741 |
T |
|
| Q |
106 |
gatccacctcggaaggcgatctcgtgagggcacactgtgcagttgttgtttttgggaaagcaatgacatcactggttgaattagcaccagctagcaacat |
205 |
Q |
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| T |
50010742 |
gatccacctcagaaggtgatctcgtgagggcacactgtgcagttgttgtttttgggaaagcaatgacatccctgattgaattagccccagctagcaacat |
50010841 |
T |
|
| Q |
206 |
aaccaatctgtctaaaccaaaagctatgcctcctgtatttgatatataa |
254 |
Q |
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|||||||||||| | |||||||||||||||||||| ||||||||||||| |
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| T |
50010842 |
aaccaatctgtccagaccaaaagctatgcctcctgcatttgatatataa |
50010890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 44107919 - 44108167
Alignment:
| Q |
10 |
attattctttaacaaagtacaaaaatgggtataggcaacaaaactatcaagagttaaatg----tctctgtagtgattgaaagatctctcagctgttggg |
105 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||| |||||| |||||||||| | ||| ||||||||||||||||||| |||||||||||| |
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| T |
44107919 |
attattctttaacagagtacaaaaatgggtataagcaacagaactatgaagagttaaacgcctatctatgtagtgattgaaagatctttcagctgttggg |
44108018 |
T |
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| Q |
106 |
gatccacctcggaaggcgatctcgtgagggcacactgtgcagttgttgtttttgggaaagcaatgacatcactggttgaattagcaccagctagcaacat |
205 |
Q |
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| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| |
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| T |
44108019 |
gttccacctcagaaggtgatctcgtgagggcacactgtgcagttgttgtttttgggaaagcaatgacatccctgattgaattagccccagctagcaacat |
44108118 |
T |
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| Q |
206 |
aaccaatctgtctaaaccaaaagctatgcctcctgtatttgatatataa |
254 |
Q |
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|||||||||||| | |||||||||||||||||||| ||||||||||||| |
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| T |
44108119 |
aaccaatctgtccagaccaaaagctatgcctcctgcatttgatatataa |
44108167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 51295242 - 51295513
Alignment:
| Q |
12 |
tattctttaacaaagtacaaaaatgggtataggcaacaaaactatcaagagttaaatg----tctctgtagtgattgaaagatctctcagctgttgggga |
107 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||| |||||| |||||||||||| ||| ||||||||||||||||||| |||||||| ||||| |
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| T |
51295242 |
tattctttaacagagtacaaaaatgggtataagcaacataactattaagagttaaatgcctatctatgtagtgattgaaagatctttcagctgtcgggga |
51295341 |
T |
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| Q |
108 |
tccacctcggaaggcgatctcgtgagggcacactgt---------------------gcagttgttgtttttgggaaagcaatgacatcactggttgaat |
186 |
Q |
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|||||||||||||| ||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| ||| |||||| |
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| T |
51295342 |
tccacctcggaaggtgatctggtgagggcacactgtgcagttcttgtttttgggaaagcagttgatgtttttgggaaagcaatgacatccctgattgaat |
51295441 |
T |
|
| Q |
187 |
tagcaccagctagcaacataaccaatctgtctaaaccaaaagctatgcctcctgtatttgatatataataac |
258 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| |
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| T |
51295442 |
tagcaccagctagcaacataaccaatctgtccagaccaaaagctatgcctcctgcatttgatatataataac |
51295513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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