View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19121_low_2 (Length: 505)
Name: NF19121_low_2
Description: NF19121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19121_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 11 - 488
Target Start/End: Complemental strand, 3657991 - 3657514
Alignment:
| Q |
11 |
catcatcaatcacagaaagcataacatcaatgaaatcatatttctcatttgacttactctcaatctcaacatcatgctcttcaacccagcttccaacaac |
110 |
Q |
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| T |
3657991 |
catcttcaatcacagaaagcataacatcaatgaaatcatatttctcatttgacttactctcaatctcaacatcatgctcttcaacccagcttccaacaac |
3657892 |
T |
|
| Q |
111 |
tgcatccaaatctctagcaattcttttcatagattttagcacttttccttcaaaaccaaaccaaccaagaattggaatcaaatccttaggaacaaactca |
210 |
Q |
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| T |
3657891 |
tgcatccaaatctctagcaattcttttcatagattttagcacttttccttcaaaaccaaaccaaccaagaattggaatcaaatccttaggaacaaactca |
3657792 |
T |
|
| Q |
211 |
ccagaaatatgcataaattcttttataagtttcacaatattcccatgtgcttcaacatcatccacatctttcaaatactcaaaataccttttcccacaaa |
310 |
Q |
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| T |
3657791 |
ccagaaatatgcataaattcttttataagtttcacaatattcccatgtgcttcaacatcatccacatctttcaaatactcaaaataccttttcccacaaa |
3657692 |
T |
|
| Q |
311 |
tcatttttgtcattatattaaatgttaacctttccaaccattcacttatcacaaccttaacctttccaaccttaacatacaatgataaatcctttatcaa |
410 |
Q |
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| T |
3657691 |
tcatttttgtcattatattaaatgttaacctttccaaccattcacttatcacaaccttaacctttccaaccttaacatacaatgataaatcctttatcaa |
3657592 |
T |
|
| Q |
411 |
agtatcgatctccgattcataaacatgtctcaacgattcaaggcgacgagacgaaagtagttcaagcatggttaattt |
488 |
Q |
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| T |
3657591 |
agtatcgatctccgattcataaacatgtctcaacgattcaaggcgacgagacgaaagtagttcaagcatggttaattt |
3657514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 484
Target Start/End: Complemental strand, 7842267 - 7841803
Alignment:
| Q |
11 |
catcatcaatcacagaaagcataacatcaatgaaatcatatttctcatttgacttactctcaatctcaacatcatgctcttcaacccagcttccaacaac |
110 |
Q |
| |
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|||| ||||||||||| ||||| |||||||||||||||| |||||||||||| ||| | |||| ||| ||||||| |||||||||||||| |
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| T |
7842267 |
catcttcaatcacagagagcatcacatcaatgaaatcatgtttctcatttgaattattaacaat---------atgttcttcaatccagcttccaacaag |
7842177 |
T |
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| Q |
111 |
tgcatccaaatctctagcaattcttttcatagattttagcacttttccttcaaaaccaaaccaaccaagaattggaatcaaatccttaggaacaaactca |
210 |
Q |
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| T |
7842176 |
tgtttccaaatctttaccaactcttttcatagatttaagcacttgtccttcaaaaccaaaccaaccaataattggaatcaagtccttaggaacaaaatca |
7842077 |
T |
|
| Q |
211 |
ccagaaatatgcataaattcttttataagtttcacaatattcccatgtgcttcaacatcatccacatctttcaaatactcaaaataccttttcccacaaa |
310 |
Q |
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| T |
7842076 |
ccagcaataagcataaattctcttataagattcacaatattaccatgtgcttctacatcttccaca---ttcaaattctcaaaataccttttcccaccaa |
7841980 |
T |
|
| Q |
311 |
tcatttttgtcattatattaaatgttaacctttccaaccattcacttatcacaaccttaacct-----ttccaaccttaacatacaatgataaatccttt |
405 |
Q |
| |
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|||| ||||| ||| ||||||||| |||||||| |||||||||||| || ||||||||||| | || | |||||||||| ||||| | |||||| |
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| T |
7841979 |
tcatctttgtgattgtattaaatgataaccttttcaaccattcactaattacaaccttaacattgttgtttc--ccttaacataaaatgaaagatcctta |
7841882 |
T |
|
| Q |
406 |
atcaaagtatcgatctccgattcataaacatgtctcaacgattcaaggcgacgagacgaaagtagttcaagcatggtta |
484 |
Q |
| |
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||| |||||| |||||||||||||||||||| ||||| ||||| ||||| ||||||||||||| ||||| |||||||| |
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| T |
7841881 |
atccaagtatgaatctccgattcataaacatgcctcaatgattcgaggcggcgagacgaaagtaattcaaccatggtta |
7841803 |
T |
|
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