View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19121_low_4 (Length: 480)
Name: NF19121_low_4
Description: NF19121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19121_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 29424843 - 29425304
Alignment:
| Q |
1 |
atgtatttttgttagcaatagactatcatattatannnnnnnccacaggccagcgcaatggaatacctattggcccaaaggtatgtgcgtgataatataa |
100 |
Q |
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| T |
29424843 |
atgtatttttgttagcaatagactatcatattatatttttttccacaggccagcgcaatggaatacctattggcccaaaggtatgtgcgtgataatataa |
29424942 |
T |
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| Q |
101 |
ttgctattacaaccatatataatgtcttagtagttatgnnnnnnnnnnnnncaaagggtattcacattgttgctctacactatattacacatgcaggctg |
200 |
Q |
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| T |
29424943 |
ttgctattacaaccatatataatgtcttagtagttatgtttttaattttttcaaagggtattaacattgttgctctacactatattacacatgcaggctg |
29425042 |
T |
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| Q |
201 |
cttcagcatggttatcaatttatccaaagggtattcacgacttgttgctctatattaaaacaaagtacaacaatccattgatctacatcactgaaaatgg |
300 |
Q |
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| T |
29425043 |
cttcagcatggttatcaatttatccaaagggtattcacgacttgttgctctatattaaaacaaagtacaacaatccattgatctacatcactgaaaatgg |
29425142 |
T |
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| Q |
301 |
taatactaatacaccatttatattcattttcaatctatttcttactaatatgaaatttgatggtaaacaactatattgtgattctatatataggtatgga |
400 |
Q |
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| T |
29425143 |
taatactaatacaccatttatattcatcttcaatctatttcttactaatatgaaatttgatggtaaacaactatattgtgattctatatataggtatgga |
29425242 |
T |
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| Q |
401 |
tgactttaatgatccaacactccctcttgagaaagcccttcaagatacacaaaggattgatt |
462 |
Q |
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| T |
29425243 |
tgactttaatgatccaacacttcctcttgagaaagcccttgaagatacacaaaggattgatt |
29425304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 191 - 340
Target Start/End: Complemental strand, 29456942 - 29456793
Alignment:
| Q |
191 |
atgcaggctgcttcagcatggttatcaatttatccaaagggtattcacgacttgttgctctatattaaaacaaagtacaacaatccattgatctacatca |
290 |
Q |
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| T |
29456942 |
atgcaggctgcttcattttggatgtcaatttatccaaagggaattcgtgaactattgctctatattaaaacaaagtacaacaaccctttgatttacatca |
29456843 |
T |
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| Q |
291 |
ctgaaaatggtaatactaatacaccatttatattcattttcaatctattt |
340 |
Q |
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| T |
29456842 |
ctgaaaatggtaataccaatacatcatttatattcactttcaatctattt |
29456793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 189 - 303
Target Start/End: Original strand, 29407350 - 29407464
Alignment:
| Q |
189 |
acatgcaggctgcttcagcatggttatcaatttatccaaagggtattcacgacttgttgctctatattaaaacaaagtacaacaatccattgatctacat |
288 |
Q |
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| T |
29407350 |
acatgcagacttcttcaatatggatgtcaatttatcctaagggaattcatgacctgctgctctatactaaaacaaagtacaacaatcctttgatatacat |
29407449 |
T |
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| Q |
289 |
cactgaaaatggtaa |
303 |
Q |
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| T |
29407450 |
cactgaaaatggtaa |
29407464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 449
Target Start/End: Complemental strand, 29456700 - 29456609
Alignment:
| Q |
362 |
ggtaaacaactatattgtgattctatatata----ggtatggatgactttaatgatccaacactccctcttgagaaagcccttcaagataca |
449 |
Q |
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| T |
29456700 |
ggtaaacgattatattgtgaatctatatatatttaggtatggatgagctcgatgatccaacacttcctctagagaaagccctagaagataca |
29456609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 42292003 - 42292087
Alignment:
| Q |
219 |
tttatccaaagggtattcacgacttgttgctctatattaaaacaaagtacaacaatccattgatctacatcactgaaaatggtaa |
303 |
Q |
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| T |
42292003 |
tttatcctaaaggaattcaagaattgttactctatgttaagaaagtgtacaacaatcctttgatttacatcaccgaaaatggtaa |
42292087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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