View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19121_low_5 (Length: 444)
Name: NF19121_low_5
Description: NF19121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19121_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 14 - 428
Target Start/End: Original strand, 31326295 - 31326717
Alignment:
| Q |
14 |
tactggcatgtactactactatgttgtccaaattcacaaattatgaaactct--ttgtttcttacgtgttattttgctatatgatccttaagcaaaatca |
111 |
Q |
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| T |
31326295 |
tactggcatgtactactaatatgttgtccaaattcacaaattatgaaactctctttgtttcttacgtgttattttgctatatgatccttaagcaaaatca |
31326394 |
T |
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| Q |
112 |
agtgatcatacacgaagaattaatctatttggttttttcaggtaggaggaagaaacttggtgaaatatctgcaaggtacaaattgagctcactatcacca |
211 |
Q |
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| T |
31326395 |
agtgatcatacatgaagaattgatctatttggttttttcaggtaggaggaagaaacttggtgaaatatctgcaaggtacaaattgagctcactatcacca |
31326494 |
T |
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| Q |
212 |
catgttaattggaatattcaaaggcatattccatgggttgatttgactacttcatcaaattattattcatatggtaaaaataatacaagggccgta---- |
307 |
Q |
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| T |
31326495 |
catgttaattggaatattcaaaggcatattccatgggttgatttgactacttcatcaaattattattcatatggtaaaaataatacaagggccgtagtga |
31326594 |
T |
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| Q |
308 |
--gtgaatgtttctgaaggaggtgccatctctctccctcatggtcatggctggccacttgaaaaggtttgggaatctttttcaacttaacttactttttc |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31326595 |
atgtgaatgtttctgaaggaggtgccatctctctccctcatggtcatggctggccacttgaaaaggtttgggaatctttttcatcttaacttactttttc |
31326694 |
T |
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| Q |
406 |
atcgtataattaaaagagaaatg |
428 |
Q |
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| T |
31326695 |
atcgtataactaaaagagaaatg |
31326717 |
T |
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