View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19121_low_6 (Length: 429)
Name: NF19121_low_6
Description: NF19121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19121_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 188 - 410
Target Start/End: Original strand, 8869033 - 8869258
Alignment:
| Q |
188 |
agctcgaccgtgaatgatggacatccaaagacagtccagagtgataacaaaagtagtaggccaattctcatcactcatgataaaatagcctttccaattc |
287 |
Q |
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| T |
8869033 |
agctcgaccgtgaatgatggccatccaaagacagtccagagtgataacaaaagtagtaagccaattctcatcactcatgataaaatagcctttccaattc |
8869132 |
T |
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| Q |
288 |
ctcaacaa----tcattcaataggatcccagcaccaaaagtttgagctaatattatggatgcattcactatcatgtgttagtctgcgctaaccacgattt |
383 |
Q |
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| T |
8869133 |
ctcaacaatcattcattcaataggatcccagcaccaaaagtttgagctaatattatggatgcattcactatcatgtgttagtctgcgctaaccacgattt |
8869232 |
T |
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| Q |
384 |
tcatttcgtaaggagacattttcccgc |
410 |
Q |
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| T |
8869233 |
tca-ttcgtaaggagacattttcccgc |
8869258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 8868885 - 8869034
Alignment:
| Q |
4 |
ggtagataatacttcactcaacttgattttcattagtctaaatatcatggtcattcacaatttagtctttcacaaagctttgaattattaagtttaaaaa |
103 |
Q |
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|||| ||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
8868885 |
ggtaaatattacttcactcaacttgattttcattagtttaaagatcatggtcattcacaatttagtctttgacaaagctttgaatcattaagtttaaaaa |
8868984 |
T |
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| Q |
104 |
tcccttgactcggcatcttcctggaaaacaaactagaatattaatggtag |
153 |
Q |
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| T |
8868985 |
tcccttgactcagcatcttcctggaaaacaaactagaatattaatggtag |
8869034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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