View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19121_low_7 (Length: 396)
Name: NF19121_low_7
Description: NF19121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19121_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 40569163 - 40568775
Alignment:
| Q |
1 |
accaacaacatcttcaacgtttttaatggaccgtgctgttttaagcaacttttcagtctcttctgaagataaattgtcgcttccccaacgacgctcttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40569163 |
accaacaacatcttcaacgtttttaatggaccgtgctgttttaagcaacttttcagtctcttctgaagataaattgtcgcttccccaacgacgctcttca |
40569064 |
T |
|
| Q |
101 |
ctaactaatattccctctaattccattgccacttctttcatggtgggtctgtcctcacccttcacccttaaacaccgttctacaataagagcaacctcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40569063 |
ctaactaatattccctctaattccattgccacttctttcatggtgggtctgtcctcacccttcacccttaaacaccgttctacaataagagcaacctcct |
40568964 |
T |
|
| Q |
201 |
ttagttgctcaatatcagcattatctatacttttgtccaaaatatgaagtaaccgaccctctttcattgaagaaaccaagtatgcggcaaggtttctatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
40568963 |
ttagttgctcaatatcagcattatctatacttttgtccaaaatatgaagtaaccgaccctctttcattgaagaaacaaagtacgcggcaaggtttctatc |
40568864 |
T |
|
| Q |
301 |
aacctctggcctgcccaaagatagcgccttctttcctgtcagtagctctgctaggaccaccccaaaactataaacatcactcttctctg |
389 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40568863 |
aacctctggcctgcccaaagatagtgccttctttcctgtcagtagctctgctaggaccaccccaaaactataaacatcactcttctctg |
40568775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 40573764 - 40573376
Alignment:
| Q |
1 |
accaacaacatcttcaacgtttttaatggaccgtgctgttttaagcaacttttcagtctcttctgaagataaattgtcgcttccccaacgacgctcttca |
100 |
Q |
| |
|
|||||| |||||||||| ||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
40573764 |
accaacgacatcttcaatgtttttaatagaccgtgctgttttaagcaagttttcagcctcttctgaagataaattgtcgcttccccaacgtcgctcttca |
40573665 |
T |
|
| Q |
101 |
ctaactaatattccctctaattccattgccacttctttcatggtgggtctgtcctcacccttcacccttaaacaccgttctacaataagagcaacctcct |
200 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| | |||||||| | |
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|
| T |
40573664 |
acaactaatattccctcaagttccattgccacttctttcatggttggtctgtcctcgcccttcacccttaaacaccgttctgcaatatgggcaacctctt |
40573565 |
T |
|
| Q |
201 |
ttagttgctcaatatcagcattatctatacttttgtccaaaatatgaagtaaccgaccctctttcattgaagaaaccaagtatgcggcaaggtttctatc |
300 |
Q |
| |
|
||||||||||||||| || | ||||||| |||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
40573564 |
ttagttgctcaatatttgcctcatctatatttttgtccaaaatatgaagtaaccgaccctgtttcatcgaagaaacaaagtatgcggcaaggtttctatc |
40573465 |
T |
|
| Q |
301 |
aacctctggcctgcccaaagatagcgccttctttcctgtcagtagctctgctaggaccaccccaaaactataaacatcactcttctctg |
389 |
Q |
| |
|
|||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| |
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|
| T |
40573464 |
aacctcaggcctcccaaaagatagcgctttctttcctgtcagtagctctgctaggactactccaaatctataaacatcactcttctctg |
40573376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 34 - 389
Target Start/End: Complemental strand, 40580188 - 40579833
Alignment:
| Q |
34 |
tgctgttttaagcaacttttcagtctcttctgaagataaattgtcgcttccccaacgacgctcttcactaactaatattccctctaattccattgccact |
133 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||| |||| ||| ||||||||||| ||||||| |||||||||||||||| | ||||||||||||| |
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|
| T |
40580188 |
tgctgttttgagcaagttttcagtctcttctgaagacaaatagtcacttccccaacggaactcttcaataactaatattccctcaagttccattgccact |
40580089 |
T |
|
| Q |
134 |
tctttcatggtgggtctgtcctcacccttcacccttaaacaccgttctacaataagagcaacctcctttagttgctcaatatcagcattatctatacttt |
233 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||||||||||||| ||||| |||||||| || ||||||||||||| | | ||||||| ||| |
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|
| T |
40580088 |
tctttcatagttggtctgtcctctcccttcacccttaaacaccgttctgcaatatcggcaacctctttaagttgctcaatatttgtctcatctatatttt |
40579989 |
T |
|
| Q |
234 |
tgtccaaaatatgaagtaaccgaccctctttcattgaagaaaccaagtatgcggcaaggtttctatcaacctctggcctgcccaaagatagcgccttctt |
333 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||| |||||||| |
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|
| T |
40579988 |
tgtccaaaatatgaagtaaccgaccctgtttcattgaagaaacaaagtatgcggaaaggtttctatctacctctggcctgccaaaagatagtgccttctt |
40579889 |
T |
|
| Q |
334 |
tcctgtcagtagctctgctaggaccaccccaaaactataaacatcactcttctctg |
389 |
Q |
| |
|
||| || ||||||||||||| ||| || ||||| |||||||||||||||||||||| |
|
|
| T |
40579888 |
tcccgttagtagctctgctatgactactccaaatctataaacatcactcttctctg |
40579833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 94 - 389
Target Start/End: Complemental strand, 40598578 - 40598283
Alignment:
| Q |
94 |
ctcttcactaactaatattccctctaattccattgccacttctttcatggtgggtctgtcctcacccttcacccttaaacaccgttctacaataagagca |
193 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |||| |||| || ||| |
|
|
| T |
40598578 |
ctcttcagtaactaatattccctctagtcccattgccacttctttcatggttggtctttcctcactcttcacccttaaacacctttctgcaattagggca |
40598479 |
T |
|
| Q |
194 |
acctcctttagttgctcaatatcagcattatctatacttttgtccaaaatatgaagtaaccgaccctctttcattgaagaaaccaagtatgcggcaaggt |
293 |
Q |
| |
|
|| |||||||| || ||||||| | ||||||| ||||||| | |||||||||||| || ||||||| || |||| || ||||| ||||||| |
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|
| T |
40598478 |
acttcctttagatgttcaatatttttctcatctatatttttgtctagaatatgaagtaattgatcctctttaatccaagacacaaagtacattgcaaggt |
40598379 |
T |
|
| Q |
294 |
ttctatcaacctctggcctgcccaaagatagcgccttctttcctgtcagtagctctgctaggaccaccccaaaactataaacatcactcttctctg |
389 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||| | |||||| ||||||||||||||||| || || || ||||| || ||||||||||||| |
|
|
| T |
40598378 |
ttctatctacctctggcctgccaaaagataatgccttttctcctgttagtagctctgctaggacaactccgaagctatagacgtcactcttctctg |
40598283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 94 - 387
Target Start/End: Complemental strand, 40591976 - 40591683
Alignment:
| Q |
94 |
ctcttcactaactaatattccctctaattccattgccacttctttcatggtgggtctgtcctcacccttcacccttaaacaccgttctacaataagagca |
193 |
Q |
| |
|
||||||| ||||||||||||| || | ||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| |||| |||| || ||| |
|
|
| T |
40591976 |
ctcttcaataactaatattccttccagttccattgccacttctttcatggatggtctttcctcactgttcacccttaaacacctttctgcaattagggca |
40591877 |
T |
|
| Q |
194 |
acctcctttagttgctcaatatcagcattatctatacttttgtccaaaatatgaagtaaccgaccctctttcattgaagaaaccaagtatgcggcaaggt |
293 |
Q |
| |
|
|| |||||||| ||||||| || | ||| || | |||||| |||||||| ||||||| | ||||||||||||||||| ||||| |||||| |
|
|
| T |
40591876 |
acttcctttagatgctcaacatttcccgcatcgatgttgctgtccagaatatgaactaaccgatcttctttcattgaagaaacaaagtacatcgcaaggc |
40591777 |
T |
|
| Q |
294 |
ttctatcaacctctggcctgcccaaagatagcgccttctttcctgtcagtagctctgctaggaccaccccaaaactataaacatcactcttctc |
387 |
Q |
| |
|
|||| || ||| |||| |||| || |||| || ||||||||||||||||||||||||||||| |||||||| || || |||||||||||||| |
|
|
| T |
40591776 |
ttctttctaccactggtctgctataacatagtgctttctttcctgtcagtagctctgctaggacaaccccaaagctgtagacatcactcttctc |
40591683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 93 - 387
Target Start/End: Complemental strand, 40602627 - 40602333
Alignment:
| Q |
93 |
gctcttcactaactaatattccctctaattccattgccacttctttcatggtgggtctgtcctcacccttcacccttaaacaccgttctacaataagagc |
192 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| |||||||||||||||||| ||||| ||||||| |||| | ||||||||| |||| |||| | || |
|
|
| T |
40602627 |
gctcttcaataactaatattccctctagttccactgccacttctttcatggtcggtctttcctcactgttcatctttaaacacctttctgcaattatggc |
40602528 |
T |
|
| Q |
193 |
aacctcctttagttgctcaatatcagcattatctatacttttgtccaaaatatgaagtaaccgaccctctttcattgaagaaaccaagtatgcggcaagg |
292 |
Q |
| |
|
||| |||||||| || |||| ||| | ||| || || |||||| ||||||||| ||| || | ||||||||||||||||| || | |||||| |
|
|
| T |
40602527 |
aacttcctttagatgatcaacatcttcccaatcaatgctgctgtccagaatatgaagcaactgatcttctttcattgaagaaacaaaatgcattgcaagg |
40602428 |
T |
|
| Q |
293 |
tttctatcaacctctggcctgcccaaagatagcgccttctttcctgtcagtagctctgctaggaccaccccaaaactataaacatcactcttctc |
387 |
Q |
| |
|
|||| || || |||||||||| ||| |||| || ||||||||||||| |||||||||||| || |||||||| |||||||||||||||||||| |
|
|
| T |
40602427 |
cttctttctacatctggcctgctaaaacatagtgctttctttcctgtcaatagctctgctagaacaaccccaaagctataaacatcactcttctc |
40602333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 80 - 389
Target Start/End: Original strand, 2014652 - 2014961
Alignment:
| Q |
80 |
cttccccaacgacgctcttcactaactaatattccctctaattccattgccacttctttcatggtgggtctgtcctcacccttcacccttaaacaccgtt |
179 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| | |||| |||||||||||||||||||||||| |||||||||||||||| |||||||| || |
|
|
| T |
2014652 |
cttccccaacggtgctcttcaataactaatattccctccagttccgctgccacttctttcatggtgggtctttcctcacccttcacccgtaaacaccttt |
2014751 |
T |
|
| Q |
180 |
ctacaataagagcaacctcctttagttgctcaatatcagcattatctatacttttgtccaaaatatgaagtaaccgaccctctttcattgaagaaaccaa |
279 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||| | || | || ||| ||||||||||||||||||||||| |||| ||||||||||||||||| || |
|
|
| T |
2014752 |
ctgcaataagggcaacctcctttagttgctcaatgttcgcctcgtcaatatttttgtccaaaatatgaagtaactgaccatctttcattgaagaaacaaa |
2014851 |
T |
|
| Q |
280 |
gtatgcggcaaggtttctatcaacctctggcctgcccaaagatagcgccttctttcctgtcagtagctctgctaggaccaccccaaaactataaacatca |
379 |
Q |
| |
|
||| |||||||||||||| | ||||||||||| |||||||| ||||||||||||| ||||||||||||||| || || ||||| ||||| || ||| |
|
|
| T |
2014852 |
gtacaatgcaaggtttctatccaactctggcctgctaaaagatagtgccttctttcctgccagtagctctgctagtacaactccaaagctatagacgtca |
2014951 |
T |
|
| Q |
380 |
ctcttctctg |
389 |
Q |
| |
|
|||||||||| |
|
|
| T |
2014952 |
ctcttctctg |
2014961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 389
Target Start/End: Original strand, 14029473 - 14029600
Alignment:
| Q |
262 |
tttcattgaagaaaccaagtatgcggcaaggtttctatcaacctctggcctgcccaaagatagcgccttctttcctgtcagtagctctgctaggaccacc |
361 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| || ||| ||| ||| | |||||| | | || |||| ||| ||||||||||||||||| ||| |
|
|
| T |
14029473 |
tttcattgaagaaacaaagtacattgcaaggtttctttctaccactgacctacaaaaagatggtgttttatttcgtgtgagtagctctgctaggacaacc |
14029572 |
T |
|
| Q |
362 |
ccaaaactataaacatcactcttctctg |
389 |
Q |
| |
|
||||||||||| ||||||| |||||||| |
|
|
| T |
14029573 |
ccaaaactatagacatcacccttctctg |
14029600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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