View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19121_low_9 (Length: 325)
Name: NF19121_low_9
Description: NF19121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19121_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 7620023 - 7620333
Alignment:
| Q |
1 |
agactcatcccaggacatattctacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacatcaacatcacacttctcaccacctggtaaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7620023 |
agactcatcccaggacatattctacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacatcaacatcacacttctcaccacctggtaaga |
7620122 |
T |
|
| Q |
101 |
acctttcaggtttgaactctaatggatcaacccattcttttggatctcgagcgatggcccatacattaaccaaaagggttgaaccctttggaatgtggta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
7620123 |
acctttcaggtttgaactctaatggatcaacccattcttttgggtctcgagcgatggcccatacattgaccaaaagagttgaaccctttggaatgtggta |
7620222 |
T |
|
| Q |
201 |
cccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggtgttgatggatgcaagcggaatgtttcttttatcactgcttgcagataaggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
7620223 |
cccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggtgttgatggatgcaagcggaatgtttcttttatcactgcttgtaggtaaggt |
7620322 |
T |
|
| Q |
301 |
aggttaggtat |
311 |
Q |
| |
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||||||||||| |
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| T |
7620323 |
aggttaggtat |
7620333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 7663869 - 7663559
Alignment:
| Q |
1 |
agactcatcccaggacatattctacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacatcaacatcacacttctcaccacctggtaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7663869 |
agactcatcccaggacatattctacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacatcaacatcacacttctcaccacctggtaaga |
7663770 |
T |
|
| Q |
101 |
acctttcaggtttgaactctaatggatcaacccattcttttggatctcgagcgatggcccatacattaaccaaaagggttgaaccctttggaatgtggta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7663769 |
acctttcaggtttgaactctaatggatcaacccattcttttgggtctcgagcgatggcccatacattaaccaaaagagttgaaccctttggaatgtggta |
7663670 |
T |
|
| Q |
201 |
cccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggtgttgatggatgcaagcggaatgtttcttttatcactgcttgcagataaggt |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| |
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| T |
7663669 |
cccaaaaatctcacaactttcagatgcaattcgtgggagggaaagaggtgttgatggatgcaagcggaaagtttcttttatcactgcttgtaggtaaggt |
7663570 |
T |
|
| Q |
301 |
aggttaggtat |
311 |
Q |
| |
|
||||||||||| |
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|
| T |
7663569 |
aggttaggtat |
7663559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 7669566 - 7669256
Alignment:
| Q |
1 |
agactcatcccaggacatattctacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacatcaacatcacacttctcaccacctggtaaga |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7669566 |
agactcatcccaacacatattctacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacatcaacatcacacttctcaccacctaataaga |
7669467 |
T |
|
| Q |
101 |
acctttcaggtttgaactctaatggatcaacccattcttttggatctcgagcgatggcccatacattaaccaaaagggttgaaccctttggaatgtggta |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |||||||| |||||| |
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| T |
7669466 |
acctttcaggtttgaatcctaatggatcaacccattcttttggatcacgagcaatggcccatacattaaccaaaagagttgaactctttggaacgtggta |
7669367 |
T |
|
| Q |
201 |
cccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggtgttgatggatgcaagcggaatgtttcttttatcactgcttgcagataaggt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| || |||||| |
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| T |
7669366 |
cccaaaaatctcacaactttcagatgcaattcgtgggagggaaagaggtgttgatgggtgcaagcgaaatgtttcttttatcactgtttgtaggtaaggt |
7669267 |
T |
|
| Q |
301 |
aggttaggtat |
311 |
Q |
| |
|
||||||||||| |
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|
| T |
7669266 |
aggttaggtat |
7669256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 10 - 302
Target Start/End: Complemental strand, 7683099 - 7682807
Alignment:
| Q |
10 |
ccaggacatattctacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacatcaacatcacacttctcaccacctggtaagaacctttcag |
109 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || | |
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| T |
7683099 |
ccagcacatattctacgtccagcgccaaaaggtataacctcaaaatcatttcccttcacatcaacatcacaattctcaccacctggtaagaacctctcgg |
7683000 |
T |
|
| Q |
110 |
gtttgaactctaatggatcaacccattcttttggatctcgagcgatggcccatacattaaccaaaagggttgaaccctttggaatgtggtacccaaaaat |
209 |
Q |
| |
|
||||||||| |||||||||||||||| || | | || ||||| |||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| |
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|
| T |
7682999 |
gtttgaactttaatggatcaacccatatttcttggtcacgagctatggcccatacatttaccaaaagagttgaatcctttggaatgtggtacccaaaaat |
7682900 |
T |
|
| Q |
210 |
ctcacaactttcagatgcaattcgcgggagggaaagaggtgttgatggatgcaagcggaatgtttcttttatcactgcttgcagataaggtag |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| || |||||||| |
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| T |
7682899 |
ctcacaactttcagatgcaattcgcgggagggaaagaggtgtagatggatgcaagcgaaatgtttcttttaccactgcttgaaggtaaggtag |
7682807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 7683690 - 7683571
Alignment:
| Q |
16 |
catattctacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacatcaacatcacacttctcaccacctggtaagaacctttcaggtttga |
115 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||| ||||||||||||||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||| |
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|
| T |
7683690 |
catattctacatccaacaccaaaaagtataacctcaaaatcatttcccttcacatcaacattacagttctcaccacctagtaagaacctttcaggtttga |
7683591 |
T |
|
| Q |
116 |
actctaatggatcaacccatt |
136 |
Q |
| |
|
|| |||| |||||||||||| |
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|
| T |
7683590 |
acattaat-gatcaacccatt |
7683571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 45481367 - 45481276
Alignment:
| Q |
1 |
agactcatcccaggacatattctacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacatcaacatcacacttctcaccacc |
92 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||| ||||||||||||| |
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| T |
45481367 |
agactcataccagcacatattctacgtccagcaccaaaaggtatcacctcaaagtcatttcccctaacatcaacatcaaacttctcaccacc |
45481276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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