View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19122_high_1 (Length: 1176)

Name: NF19122_high_1
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19122_high_1
NF19122_high_1
[»] chr5 (22 HSPs)
chr5 (48-1159)||(13341275-13342402)
chr5 (408-574)||(19377589-19377759)
chr5 (307-409)||(15446403-15446506)
chr5 (245-404)||(41427615-41427774)
chr5 (246-365)||(43005634-43005753)
chr5 (412-545)||(13349509-13349643)
chr5 (244-404)||(16417173-16417331)
chr5 (340-402)||(30804134-30804194)
chr5 (332-391)||(13348761-13348818)
chr5 (412-516)||(15446247-15446353)
chr5 (345-404)||(22984675-22984734)
chr5 (332-409)||(9996830-9996908)
chr5 (452-545)||(187900-187995)
chr5 (246-362)||(27339962-27340078)
chr5 (306-381)||(30799616-30799693)
chr5 (377-409)||(19579147-19579179)
chr5 (378-409)||(18843919-18843950)
chr5 (378-409)||(20321147-20321178)
chr5 (442-530)||(29270166-29270256)
chr5 (408-502)||(41427470-41427565)
chr5 (377-406)||(41688559-41688588)
chr5 (376-405)||(43235076-43235105)
[»] chr6 (32 HSPs)
chr6 (245-409)||(33592925-33593088)
chr6 (245-404)||(27890582-27890741)
chr6 (300-409)||(20432421-20432531)
chr6 (408-580)||(33593134-33593316)
chr6 (411-540)||(31407319-31407451)
chr6 (442-544)||(28669336-28669441)
chr6 (408-545)||(7621950-7622091)
chr6 (244-409)||(22498213-22498365)
chr6 (340-405)||(28669498-28669563)
chr6 (246-362)||(30912181-30912297)
chr6 (299-409)||(4596680-4596792)
chr6 (772-877)||(33593690-33593797)
chr6 (408-520)||(27890419-27890532)
chr6 (788-873)||(10958231-10958317)
chr6 (408-531)||(20432576-20432701)
chr6 (472-545)||(4596888-4596961)
chr6 (343-404)||(31108351-31108412)
chr6 (332-404)||(31407505-31407577)
chr6 (249-378)||(1179047-1179177)
chr6 (246-380)||(7621749-7621884)
chr6 (243-409)||(19748537-19748690)
chr6 (245-362)||(23898049-23898165)
chr6 (408-529)||(31108183-31108303)
chr6 (245-365)||(11327336-11327456)
chr6 (245-409)||(17103399-17103550)
chr6 (378-409)||(7918244-7918275)
chr6 (378-409)||(17543624-17543655)
chr6 (245-296)||(21354979-21355030)
chr6 (378-409)||(26053190-26053221)
chr6 (378-409)||(26073243-26073274)
chr6 (302-355)||(2912091-2912145)
chr6 (411-465)||(7857093-7857149)
[»] chr1 (22 HSPs)
chr1 (271-580)||(39845055-39845376)
chr1 (415-530)||(22789235-22789352)
chr1 (408-579)||(24117478-24117655)
chr1 (248-362)||(32881558-32881672)
chr1 (245-375)||(16434734-16434864)
chr1 (243-362)||(13100428-13100547)
chr1 (246-365)||(14074258-14074377)
chr1 (343-402)||(12002731-12002790)
chr1 (449-520)||(12002935-12003005)
chr1 (300-409)||(21242855-21242966)
chr1 (245-362)||(41032547-41032664)
chr1 (410-516)||(8773010-8773117)
chr1 (304-360)||(17055751-17055808)
chr1 (248-372)||(17197306-17197430)
chr1 (378-409)||(18304705-18304736)
chr1 (378-409)||(23528860-23528891)
chr1 (245-363)||(25146542-25146660)
chr1 (378-408)||(16125349-16125379)
chr1 (376-406)||(17869642-17869672)
chr1 (304-365)||(23528891-23528953)
chr1 (378-407)||(13100294-13100323)
chr1 (302-362)||(47786096-47786157)
[»] chr2 (23 HSPs)
chr2 (244-386)||(19245803-19245945)
chr2 (245-404)||(974534-974694)
chr2 (243-406)||(21869093-21869256)
chr2 (253-404)||(20034004-20034155)
chr2 (408-680)||(26251387-26251673)
chr2 (409-531)||(27749733-27749857)
chr2 (246-361)||(8428461-8428576)
chr2 (307-404)||(34578085-34578183)
chr2 (246-362)||(16767023-16767140)
chr2 (408-574)||(21869304-21869472)
chr2 (409-524)||(19245621-19245742)
chr2 (304-404)||(27523928-27524029)
chr2 (408-508)||(974383-974484)
chr2 (420-574)||(19519370-19519527)
chr2 (245-390)||(27749283-27749428)
chr2 (365-402)||(19245865-19245902)
chr2 (245-365)||(20063958-20064078)
chr2 (246-362)||(25538920-25539036)
chr2 (365-409)||(8428491-8428535)
chr2 (245-362)||(13502448-13502564)
chr2 (340-401)||(19519586-19519647)
chr2 (332-409)||(24474025-24474102)
chr2 (779-832)||(27146154-27146207)
[»] chr7 (26 HSPs)
chr7 (247-405)||(4574925-4575083)
chr7 (408-546)||(1981306-1981445)
chr7 (245-362)||(39182394-39182511)
chr7 (246-362)||(22687042-22687158)
chr7 (245-404)||(1981099-1981256)
chr7 (345-404)||(7307206-7307265)
chr7 (452-545)||(7307019-7307113)
chr7 (477-543)||(8304094-8304161)
chr7 (245-404)||(25842505-25842664)
chr7 (345-400)||(8629602-8629657)
chr7 (300-366)||(21157521-21157588)
chr7 (304-404)||(8304282-8304383)
chr7 (246-362)||(14055495-14055610)
chr7 (246-362)||(14365523-14365638)
chr7 (376-408)||(5058734-5058766)
chr7 (245-317)||(10285677-10285748)
chr7 (377-409)||(17811552-17811584)
chr7 (378-409)||(24725366-24725397)
chr7 (300-362)||(26565376-26565439)
chr7 (414-521)||(4574756-4574865)
chr7 (301-362)||(8329873-8329935)
chr7 (343-405)||(26340244-26340306)
chr7 (302-362)||(8329809-8329870)
chr7 (811-863)||(17809440-17809493)
chr7 (376-405)||(26617369-26617398)
chr7 (244-348)||(48621428-48621532)
[»] chr4 (36 HSPs)
chr4 (245-362)||(7452744-7452860)
chr4 (408-525)||(20812568-20812687)
chr4 (408-522)||(8743748-8743864)
chr4 (245-404)||(55476184-55476343)
chr4 (449-576)||(18437598-18437728)
chr4 (242-355)||(8889462-8889574)
chr4 (245-365)||(10394845-10394965)
chr4 (449-576)||(18327670-18327801)
chr4 (332-410)||(5845971-5846050)
chr4 (245-355)||(6346729-6346839)
chr4 (304-404)||(8367398-8367499)
chr4 (244-312)||(27528123-27528191)
chr4 (253-358)||(4157269-4157377)
chr4 (253-358)||(4157556-4157664)
chr4 (332-409)||(5884141-5884218)
chr4 (246-362)||(17466317-17466433)
chr4 (302-362)||(37240477-37240538)
chr4 (245-362)||(24719813-24719923)
chr4 (299-357)||(5943086-5943145)
chr4 (247-365)||(23064737-23064855)
chr4 (792-826)||(5884496-5884530)
chr4 (302-362)||(5361795-5361856)
chr4 (367-404)||(10394884-10394921)
chr4 (245-290)||(15982742-15982787)
chr4 (332-400)||(8743626-8743694)
chr4 (378-409)||(6346849-6346880)
chr4 (248-362)||(10143138-10143250)
chr4 (353-404)||(18403737-18403788)
chr4 (245-375)||(18459405-18459535)
chr4 (378-409)||(36121027-36121058)
chr4 (245-358)||(7045186-7045299)
chr4 (367-409)||(7045213-7045255)
chr4 (378-408)||(9911305-9911335)
chr4 (324-409)||(20812734-20812820)
chr4 (343-376)||(8020578-8020611)
chr4 (364-409)||(10143169-10143214)
[»] chr3 (34 HSPs)
chr3 (244-402)||(8592172-8592330)
chr3 (408-579)||(6861110-6861286)
chr3 (245-404)||(27090645-27090797)
chr3 (246-362)||(10872490-10872606)
chr3 (408-552)||(8566196-8566341)
chr3 (244-362)||(27676674-27676792)
chr3 (241-362)||(13286182-13286303)
chr3 (244-353)||(41671426-41671535)
chr3 (245-406)||(8560231-8560392)
chr3 (347-409)||(26208254-26208316)
chr3 (242-362)||(6136340-6136460)
chr3 (246-362)||(17064545-17064661)
chr3 (253-404)||(3041419-3041570)
chr3 (250-334)||(13006092-13006174)
chr3 (245-362)||(42697086-42697202)
chr3 (245-362)||(3449084-3449201)
chr3 (247-360)||(17796805-17796918)
chr3 (247-360)||(19105245-19105358)
chr3 (477-571)||(20766864-20766961)
chr3 (245-362)||(25870096-25870213)
chr3 (304-404)||(18014187-18014288)
chr3 (343-404)||(21553764-21553825)
chr3 (304-404)||(22971005-22971106)
chr3 (442-535)||(26207574-26207669)
chr3 (367-402)||(6136387-6136422)
chr3 (378-409)||(20756226-20756257)
chr3 (378-409)||(25870216-25870247)
chr3 (378-409)||(28745980-28746011)
chr3 (378-409)||(39428107-39428138)
chr3 (246-296)||(6860986-6861036)
chr3 (245-362)||(28136000-28136117)
chr3 (245-302)||(15806222-15806279)
chr3 (343-404)||(19348749-19348810)
chr3 (364-401)||(52519848-52519885)
[»] chr8 (27 HSPs)
chr8 (245-355)||(29384086-29384196)
chr8 (245-362)||(22909978-22910094)
chr8 (255-404)||(2040315-2040464)
chr8 (245-362)||(6811057-6811174)
chr8 (245-362)||(15761132-15761249)
chr8 (287-409)||(26574933-26575048)
chr8 (246-409)||(17647201-17647351)
chr8 (245-363)||(7489057-7489175)
chr8 (244-354)||(17566344-17566454)
chr8 (248-365)||(5922283-5922400)
chr8 (245-362)||(15231859-15231976)
chr8 (367-409)||(26879779-26879821)
chr8 (792-873)||(30240677-30240759)
chr8 (245-402)||(40541594-40541751)
chr8 (245-334)||(11879867-11879955)
chr8 (245-334)||(11897283-11897371)
chr8 (248-329)||(11973942-11974022)
chr8 (246-365)||(24414062-24414181)
chr8 (250-365)||(45403264-45403379)
chr8 (378-409)||(15294771-15294802)
chr8 (378-409)||(15475140-15475171)
chr8 (378-408)||(23142379-23142409)
chr8 (249-362)||(24056348-24056461)
chr8 (452-574)||(40541849-40541973)
chr8 (376-409)||(3094248-3094281)
chr8 (377-406)||(7489176-7489205)
chr8 (304-404)||(16752219-16752320)
[»] scaffold0028 (1 HSPs)
scaffold0028 (246-383)||(145805-145942)
[»] scaffold0001 (1 HSPs)
scaffold0001 (301-404)||(142825-142929)
[»] scaffold0016 (1 HSPs)
scaffold0016 (245-409)||(56199-56350)
[»] scaffold0186 (2 HSPs)
scaffold0186 (245-365)||(8676-8796)
scaffold0186 (378-409)||(8645-8676)
[»] scaffold0079 (1 HSPs)
scaffold0079 (304-404)||(14758-14859)
[»] scaffold0048 (1 HSPs)
scaffold0048 (246-362)||(61089-61205)
[»] scaffold0017 (1 HSPs)
scaffold0017 (245-404)||(38301-38459)
[»] scaffold1178 (1 HSPs)
scaffold1178 (476-531)||(369-424)
[»] scaffold0534 (1 HSPs)
scaffold0534 (244-354)||(916-1026)
[»] scaffold0027 (1 HSPs)
scaffold0027 (304-402)||(132947-133046)
[»] scaffold0603 (1 HSPs)
scaffold0603 (253-362)||(8741-8850)
[»] scaffold0684 (1 HSPs)
scaffold0684 (409-530)||(5196-5321)
[»] scaffold0526 (1 HSPs)
scaffold0526 (477-531)||(8187-8244)
[»] scaffold0182 (1 HSPs)
scaffold0182 (345-404)||(24582-24641)
[»] scaffold0259 (2 HSPs)
scaffold0259 (472-530)||(18427-18485)
scaffold0259 (367-409)||(18588-18630)
[»] scaffold0150 (2 HSPs)
scaffold0150 (300-381)||(33157-33239)
scaffold0150 (370-404)||(33212-33246)


Alignment Details
Target: chr5 (Bit Score: 951; Significance: 0; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 951; E-Value: 0
Query Start/End: Original strand, 48 - 1159
Target Start/End: Original strand, 13341275 - 13342402
Alignment:
Q  48 acatcagtgtcgacagacaatatattaaattcttcccttctcagaaggattctccaataagatgcagtagctttagacacatgcct-ataaggattctcc 146  Q
    ||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13341275 acatcagtgtcgacagacaatatattaaattcttccctaatcacaaggattctccaataagatgcagtagctttagacacatgccttataaggattctcc 13341374  T
Q  147 aatccaaatggagtcattccatgataaggttccatagttgagttctccatcagaggaatctccatgtgaggaatttctataggagcttgaaatgtaggca 246  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13341375 aatccaaatggagtcattccatgataaggttccatag--gagttctccatcagaggaatctccatgtgaggaatttctataggagcttgaaatgtaggca 13341472  T
Q  247 aggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggatttactcgactactt 346  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13341473 aggttgtcaaaatcgggattttgcttcaaatcgaaagggaatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggatttactcgactactt 13341572  T
Q  347 ttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatggatagtcataaatgactcaaagtttcaagtccgctaaata 446  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13341573 ttgtagaatcgatataggatagcaaaatcaaaaattttaaaatcgcaatcaaaatcgatggatagtcataaatgactcaaagtttcaagtccgctaaata 13341672  T
Q  447 cttat--ataaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgctaaacgacctagacaaaatacttaaagcaaatcctagatg 544  Q
    |||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13341673 cttatacataaatgactcaaagtttaaatgccaaatattctttaggagtcataataatgctaaacgacctagacaaaatacttaaagcaaatcctagatg 13341772  T
Q  545 cattacaaag--cttgatcataagtgagtaagtgac----------tcaaggcaaattagatttgatgtcttacaaaatacttaatcataaataactcaa 632  Q
    | ||||||||  ||||||||||||||||||||||||          ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13341773 ccttacaaagtacttgatcataagtgagtaagtgactctttaagtttcaaggcaaattagacttgatgtcttacaaaatacttaatcataaataactcaa 13341872  T
Q  633 agttcacgtccacaaaatacttaaagcaatgcctagatgcaatcataacaaaaatggtcccgtataa-annnnnnnnccctaaaatccttcaaaattccg 731  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |        |||||||||||||||||||||||    
T  13341873 agttcacgtccacaaaatacttaaagcaatgcctagatgcaatcgtaacaaaaatggtcccgtataatattttttttccctaaaatccttcaaaattccg 13341972  T
Q  732 tgaaacttccgattttgcagggatttcacgattttacta--atttttctagtttttggattctgcaatggatttggatcgatgaaggtgagtaaagtcac 829  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13341973 tgaaacttccgattttgcagggatttcacgattttactaagatttttctagtttttggattctgcaatggatttggatcgatgaaggtgagtaaagtcaa 13342072  T
Q  830 aaatccttgattttgcgatttaaatcgcgattttgagaacaatgaatgtaggtgcatgcacttgtatttcagtgtcatgaagaatgaagtcaggaactaa 929  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13342073 aaatcctggattttgcgatttaaatcgcgattttgacaacaatgaatgtaggtgcatgcacttgtatttcagtgtcatgaagaatgaagtcaggaactaa 13342172  T
Q  930 agctttgtcaaatgaattaattccatagggaaaaaattcatttggaacaaatgaagtaagatttttgatacctttggctgtccttcctttcttcaaactt 1029  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13342173 agctttgtcaaatgaattaattccatagggaaaaaattcatttggaacaaatgaagtaagatttttgatacctttggctgtccttccttacttcaaactt 13342272  T
Q  1030 tgtgcataaggtttccctagttttttgaaatgccaaggggtttctttcagctactaaattgccaaaaaccttgttcaattcaatccagtttgttacagat 1129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13342273 tgtgcataaggtttccctagttttttgaaatgccaaggggtttctttcagctactaaattgccaaaaaccttgttcaattcaatccagtttgttacagat 13342372  T
Q  1130 agaagaaattcctcccgttatgcagaagct 1159  Q
    |||||||||||||| | |||||||||||||    
T  13342373 agaagaaattcctcacattatgcagaagct 13342402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 408 - 574
Target Start/End: Complemental strand, 19377759 - 19377589
Alignment:
Q  408 atagtcataaatgactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgct 505  Q
    |||||||||||||||| ||||||  |||||| | |||||| ||||  ||||||||||||||  || |||| |||||||||| || ||||||||||||| |    
T  19377759 atagtcataaatgacttaaagttcaaagtccacaaaatacatatacataaatgactcaaaggctagatgc-aaatattctttagtagtcataataatgtt 19377661  T
Q  506 aaacgacctagacaaaatacttaaa-gcaaatcctagatgcattacaaa--gcttgatcataagtgagtaag 574  Q
    |||| |||||||||||||||||||| | ||||||||||||| | |||||   |||||||| |||||||||||    
T  19377660 aaacaacctagacaaaatacttaaaggtaaatcctagatgcctgacaaaatacttgatcacaagtgagtaag 19377589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 307 - 409
Target Start/End: Complemental strand, 15446506 - 15446403
Alignment:
Q  307 taaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgat 405  Q
    ||||||| ||| |||||  ||||||||| | |||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||||||||||||||    
T  15446506 taaaatcacaatcgaaaccgaaggattttagtcgactacttttgtagaatcgatataagatagcaaaatcgaaactcgtaaaatcgcaatcaaaatcgat 15446407  T
Q  406 ggat 409  Q
    ||||    
T  15446406 ggat 15446403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 245 - 404
Target Start/End: Complemental strand, 41427774 - 41427615
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    ||||||||||||||||| || ||| |||| | |||||||||  ||| ||||| |  |  |||||||||||||| | |||| ||||||||| ||||||  |    
T  41427774 caaggttgtcaaaatcgagactttacttcgagtcgaaagggagtagcaaaatcgggac-tcgtaaaatcgcaatcaaaatcgaaggattttactcgagga 41427676  T
Q  344 cttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    |||||||||||||||||||||||||||||||    ||||||||||| ||||||||||||||    
T  41427675 cttttgtagaatcgatataggatagcaaaatagggaattgtaaaattgcaatcaaaatcga 41427615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 246 - 365
Target Start/End: Original strand, 43005634 - 43005753
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactac 344  Q
    ||||||||||||||||||||||||||| | |||||||||  |||| ||||||  ||||| |||||||||||| | |||||||| || ||||||| ||| |    
T  43005634 aaggttgtcaaaatcgggattttgctttagatcgaaaggaaatag-aaaattcgaaaattgtaaaatcgcaatcaaaattgaaagattttactcaacttc 43005732  T
Q  345 ttttgtagaatcgatatagga 365  Q
    |||||||||||||||||||||    
T  43005733 ttttgtagaatcgatatagga 43005753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 412 - 545
Target Start/End: Original strand, 13349509 - 13349643
Alignment:
Q  412 tcataaatgactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgctaaac 509  Q
    ||||||||||||||  |||| |||||| | |||||||||||  ||||||||||||||| ||| |||||||||||  |  | ||||||||||||| | |||    
T  13349509 tcataaatgactca--gtttgaagtccacaaaatacttatacataaatgactcaaagtataactgccaaatattaatttgtagtcataataatgttgaac 13349606  T
Q  510 gacctagacaaaatactta-aagcaaatcctagatgc 545  Q
     ||| |||||||||||||| ||  |||||||||||||    
T  13349607 aaccaagacaaaatacttacaataaaatcctagatgc 13349643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 404
Target Start/End: Complemental strand, 16417331 - 16417173
Alignment:
Q  244 gcaaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggatttactcgacta 343  Q
    ||||||||||||||| | | |||||||||||||| ||||||  |||  |||||   |||||| ||||||||||| |||||| ||||  ||||||| | ||    
T  16417331 gcaaggttgtcaaaaccagaattttgcttcaaattgaaaggagataacaaaatc--aaaatcataaaatcgcaatcgaaatcgaagattttactcaaata 16417234  T
Q  344 cttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
      ||||||| |||||| |  ||||||| ||| ||||||  ||||||||||||| |||||||    
T  16417233 actttgtaggatcgatttgagatagcacaataaaaaatcataaaatcgcaatcgaaatcga 16417173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 340 - 402
Target Start/End: Complemental strand, 30804194 - 30804134
Alignment:
Q  340 actacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatc 402  Q
    |||||||||||||||||||||||||  ||||||||| ||||| ||||||||||||| ||||||    
T  30804194 actacttttgtagaatcgatatagg--agcaaaatcgaaaatggtaaaatcgcaatgaaaatc 30804134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 13348761 - 13348818
Alignment:
Q  332 tttactcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcg 391  Q
    ||||||| |||| |||||||||||  |||||||||||||||||||||||| |||||||||    
T  13348761 tttactcaactagttttgtagaat--atataggatagcaaaatcaaaaatagtaaaatcg 13348818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 412 - 516
Target Start/End: Complemental strand, 15446353 - 15446247
Alignment:
Q  412 tcataaatgactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgctaaac 509  Q
    |||||||||||||||||||| |||||| | || ||||| ||  ||||||||||||  |  | |||||||||||||||  | ||||||||||||| |||||    
T  15446353 tcataaatgactcaaagtttaaagtccacaaattacttgtacataaatgactcaagatcgagatgccaaatattctttcgtagtcataataatgttaaac 15446254  T
Q  510 gacctag 516  Q
     ||||||    
T  15446253 aacctag 15446247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 404
Target Start/End: Original strand, 22984675 - 22984734
Alignment:
Q  345 ttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    |||||||||||||||||||||||||||||||  | || |||||||  |||||||||||||    
T  22984675 ttttgtagaatcgatataggatagcaaaatcccatatcgtaaaattccaatcaaaatcga 22984734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 332 - 409
Target Start/End: Original strand, 9996830 - 9996908
Alignment:
Q  332 tttactcgactacttttgtagaatcgatataggatagcaaaa-tcaaaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    |||||| ||||||||||||||| |  ||||| |||||||||| | |||| |||||||||  ||||||||||||||||||    
T  9996830 tttacttgactacttttgtagagttaatataagatagcaaaattgaaaagttgtaaaattacaatcaaaatcgatggat 9996908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 452 - 545
Target Start/End: Original strand, 187900 - 187995
Alignment:
Q  452 ataaatgactcaaagtttaaatgccaaatattcttcaggagtca-taataatgctaaacgacctagacaaaatacttaaa--gcaaatcctagatgc 545  Q
    |||||||||||||||  || |||| ||||||| || || ||||| |||||||||||||| ||||| ||||||||||||||  |||||||||| ||||    
T  187900 ataaatgactcaaagcctagatgc-aaatattttttagtagtcagtaataatgctaaacaacctatacaaaatacttaaaaggcaaatcctaaatgc 187995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 362
Target Start/End: Original strand, 27339962 - 27340078
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactac 344  Q
    ||||||||||||||||| | ||| |||||| | ||||||| |||| ||||| | |||||||| ||||||||| | |||| |||||| |||||||    ||    
T  27339962 aaggttgtcaaaatcggaactttacttcaagttgaaagggaatagcaaaatcg-aaaatcgtgaaatcgcaatcaaaatcgaaggattttactcacggac 27340060  T
Q  345 ttttgtagaatcgatata 362  Q
    ||||||||||| ||||||    
T  27340061 ttttgtagaattgatata 27340078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 381
Target Start/End: Complemental strand, 30799693 - 30799616
Alignment:
Q  306 gtaaaatcgcaaa-cgaaattgaaggattt-actcgactacttttgtagaatcgatataggatagcaaaatcaaaaat 381  Q
    ||||||||| ||| |||||| ||||||||| || | ||||||||||||||||||||||| ||||| |||||| |||||    
T  30799693 gtaaaatcgaaaatcgaaatcgaaggattttacacaactacttttgtagaatcgatatatgatagaaaaatcgaaaat 30799616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 377 - 409
Target Start/End: Complemental strand, 19579179 - 19579147
Alignment:
Q  377 aaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    |||||||||||||||||||||||||||||||||    
T  19579179 aaaattgtaaaatcgcaatcaaaatcgatggat 19579147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Complemental strand, 18843950 - 18843919
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  18843950 aaattgtaaaatcgcaatcaaaatcgatggat 18843919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Complemental strand, 20321178 - 20321147
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  20321178 aaattgtaaaatcgcaatcaaaatcgatggat 20321147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 442 - 530
Target Start/End: Complemental strand, 29270256 - 29270166
Alignment:
Q  442 aaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgctaaacgacctagacaaaatacttaaa 530  Q
    |||||||||||  ||||||||||||||  || |||  ||||||||||     |||||||||||||||||| ||||||| ||||||||||||    
T  29270256 aaatacttatacataaatgactcaaagcctatatgagaaatattcttttattgtcataataatgctaaacaacctagataaaatacttaaa 29270166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 408 - 502
Target Start/End: Complemental strand, 41427565 - 41427470
Alignment:
Q  408 atagtcataaatgactcaaagtttcaagtccgctaaatacttat--ataaatgactcaaagtttaaatgccaaatattcttcaggagtcataataat 502  Q
    |||||||||||||||| ||||||  |||||| | |||||| |||  |||||||||||||||  || ||| ||||||||||| ||  |||||||||||    
T  41427565 atagtcataaatgacttaaagttcaaagtccacaaaatacatatacataaatgactcaaagcctagatg-caaatattctttagtggtcataataat 41427470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 41688559 - 41688588
Alignment:
Q  377 aaaattgtaaaatcgcaatcaaaatcgatg 406  Q
    ||||||||||||||||||||||||||||||    
T  41688559 aaaattgtaaaatcgcaatcaaaatcgatg 41688588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 376 - 405
Target Start/End: Complemental strand, 43235105 - 43235076
Alignment:
Q  376 aaaaattgtaaaatcgcaatcaaaatcgat 405  Q
    ||||||||||||||||||||||||||||||    
T  43235105 aaaaattgtaaaatcgcaatcaaaatcgat 43235076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 7e-52; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 245 - 409
Target Start/End: Original strand, 33592925 - 33593088
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggatttactcgactac 344  Q
    |||| ||||||||||||||||||||||||| |||||||||| |||  ||||||||||| ||||||||| |||| |||||| ||| ||||||||| |||||    
T  33592925 caagattgtcaaaatcgggattttgcttcatatcgaaagggaataacaaaattgaaaa-tcgtaaaattgcaatcgaaatcgaatgatttactcaactac 33593023  T
Q  345 ttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  33593024 ttttgtagaattgatataggatagcaaaatcaaaaatcataaaatcgcaatcaaaatcgatggat 33593088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 245 - 404
Target Start/End: Complemental strand, 27890741 - 27890582
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    ||||||||||||| ||| || ||| |||||| | |||||||  ||| ||||||| ||  ||||||||||| || | |||||||||||||| |||| |  |    
T  27890741 caaggttgtcaaattcgagactttacttcaagttgaaagggagtagtaaaattggaac-tcgtaaaatcgtaatcaaaattgaaggattttactcaagga 27890643  T
Q  344 cttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    |||||||||||||||||||||||||||||||||  | | ||||||||||||||||||||||    
T  27890642 cttttgtagaatcgatataggatagcaaaatcaggactcgtaaaatcgcaatcaaaatcga 27890582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 300 - 409
Target Start/End: Original strand, 20432421 - 20432531
Alignment:
Q  300 aaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaa 398  Q
    |||||||||||||||||| | ||||||||| |||| |||  |||| |||||||||||||||||||| ||| |||||| ||||| ||||| ||||||||||    
T  20432421 aaaatcgtaaaatcgcaatcaaaattgaagaattttacttaactagttttgtagaatcgatatagggtaggaaaatccaaaatcgtaaattcgcaatcaa 20432520  T
Q  399 aatcgatggat 409  Q
    |||||||||||    
T  20432521 aatcgatggat 20432531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 408 - 580
Target Start/End: Original strand, 33593134 - 33593316
Alignment:
Q  408 atagtcataaatgactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgct 505  Q
    |||||||| | |||||||||||||||||||  | |||||||||||  |||||||||||||| ||||||| ||||||||||  || | |||||||||||||    
T  33593134 atagtcattattgactcaaagtttcaagtctacaaaatacttatacataaatgactcaaagcttaaatgtcaaatattctatagtaatcataataatgct 33593233  T
Q  506 aaac-------gacctagacaaaatacttaaagcaaatcctagatgcattacaaa--gcttgatcataagtgagtaagtgactc 580  Q
    ||||       | ||| ||| ||||||||||||||||||||||||||   |||||    |||||||||||||||||||||||||    
T  33593234 aaacaaccttggtccttgac-aaatacttaaagcaaatcctagatgcccgacaaaatatttgatcataagtgagtaagtgactc 33593316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 411 - 540
Target Start/End: Complemental strand, 31407451 - 31407319
Alignment:
Q  411 gtcataaatgactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgctaaa 508  Q
    ||||||||||||||||||||| || ||| | |||||||||||  ||||||||| ||||| || ||||||||||| ||| || ||||||||||||| ||||    
T  31407451 gtcataaatgactcaaagtttaaattccacaaaatacttatacataaatgactaaaagtctagatgccaaatatactttagtagtcataataatgttaaa 31407352  T
Q  509 cgacctagacaaaatacttaaag-caaatccta 540  Q
      |||||||||| |||||| ||| |||||||||    
T  31407351 aaacctagacaagatactttaagacaaatccta 31407319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 442 - 544
Target Start/End: Complemental strand, 28669441 - 28669336
Alignment:
Q  442 aaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgctaaacgacctagacaaaatacttaaa-gcaaatcc 538  Q
    |||||||||||  ||||||||||||||  || ||| ||||||||||| || |||||||||||| |||||| || ||||||||||||||||| ||||||||    
T  28669441 aaatacttatacataaatgactcaaagcctagatgtcaaatattctttagtagtcataataatactaaacaacttagacaaaatacttaaaggcaaatcc 28669342  T
Q  539 tagatg 544  Q
    ||||||    
T  28669341 tagatg 28669336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 408 - 545
Target Start/End: Original strand, 7621950 - 7622091
Alignment:
Q  408 atagtcataaatgactcaaa-gtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgc 504  Q
    |||||||||||||| ||||| ||||||||| |   |||||||||||  |||||||||||||   || ||| ||||||||||| || |||||| ||||||     
T  7621950 atagtcataaatgattcaaaagtttcaagttcataaaatacttatacataaatgactcaaatcctagatgtcaaatattctttagtagtcatgataatga 7622049  T
Q  505 taaacgacctagacaaaatacttaaa-gcaaatcctagatgc 545  Q
    ||||| |||||||||||||| ||||| |||||||||| ||||    
T  7622050 taaacaacctagacaaaatatttaaaggcaaatcctaaatgc 7622091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 244 - 409
Target Start/End: Original strand, 22498213 - 22498365
Alignment:
Q  244 gcaaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgact 342  Q
    |||||||||||||||| |||| ||| |||||  ||||||||| |||| |||||||  |  |||||||||||||| | |||||||| ||||| |||| |      
T  22498213 gcaaggttgtcaaaattgggactttacttcaggtcgaaagggaatagcaaaattgggac-tcgtaaaatcgcaatcaaaattgaacgattttactcaaag 22498311  T
Q  343 acttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    |||||||||||||||||||||||             |||||||||||||||||||||||||||||||    
T  22498312 acttttgtagaatcgatatagga-------------aattgtaaaatcgcaatcaaaatcgatggat 22498365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 28669563 - 28669498
Alignment:
Q  340 actacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgat 405  Q
    |||| ||||||||||||||| |||||||| |||||| ||||| ||||||||||||| |||||||||    
T  28669563 actatttttgtagaatcgatgtaggatagtaaaatcgaaaatcgtaaaatcgcaattaaaatcgat 28669498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 362
Target Start/End: Original strand, 30912181 - 30912297
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactac 344  Q
    ||||||||||||||||| |||||||||||  | ||||| | |||| ||||| | | |||||||||||| ||| | ||||||||||| |||| || |||||    
T  30912181 aaggttgtcaaaatcggaattttgcttcaggttgaaagagaatagcaaaatcg-ataatcgtaaaatctcaaccaaaattgaaggattttattcaactac 30912279  T
Q  345 ttttgtagaatcgatata 362  Q
    ||||||| ||||||||||    
T  30912280 ttttgtaaaatcgatata 30912297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 409
Target Start/End: Original strand, 4596680 - 4596792
Alignment:
Q  299 aaaaatcgtaaaatcgcaaacgaaattgaaggatt-tactcgactacttttgtagaatcgatataggatagcaaaat-caaaaattgtaaaatcgcaatc 396  Q
    |||||| ||||||| |||| | ||||||||||||| ||||| | ||||||| |||||| ||||||||||||| |||  | ||||| |||||||||||||     
T  4596680 aaaaattgtaaaattgcaatcaaaattgaaggattctactcaattacttttctagaattgatataggatagcgaaacacgaaaatcgtaaaatcgcaata 4596779  T
Q  397 aaaatcgatggat 409  Q
    ||||||| |||||    
T  4596780 aaaatcggtggat 4596792  T

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Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 772 - 877
Target Start/End: Original strand, 33593690 - 33593797
Alignment:
Q  772 tttttctagtttttggattctgcaatggatttggatcgatgaaggtgagtaaagt--cacaaatccttgattttgcgatttaaatcgcgattttgagaac 869  Q
    ||||||| || |||||||| |||||||||||||| ||  ||||||||||||||||  || ||| ||   ||||| |||||||||||| |||||||| |||    
T  33593690 tttttcttgtgtttggattttgcaatggatttggctcattgaaggtgagtaaagtcgcaaaaacccaaaattttacgatttaaatcgtgattttgacaac 33593789  T
Q  870 aatgaatg 877  Q
    ||||||||    
T  33593790 aatgaatg 33593797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 408 - 520
Target Start/End: Complemental strand, 27890532 - 27890419
Alignment:
Q  408 atagtcataaatgactcaaagtttcaagtccgctaaatacttatata--aatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgct 505  Q
    |||||||||||||| | ||||||  |||||| | |||||| ||||||  |||| |||||||  || |||| |||||||||| || |||||||||||||||    
T  27890532 atagtcataaatgagttaaagttcaaagtccacaaaatacatatatataaatgtctcaaagcctagatgc-aaatattctttagtagtcataataatgct 27890434  T
Q  506 aaacgacctagacaa 520  Q
    |||| ||||||||||    
T  27890433 aaacaacctagacaa 27890419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 788 - 873
Target Start/End: Original strand, 10958231 - 10958317
Alignment:
Q  788 attctgcaatggatttggatcgatgaaggtgagtaaagtcac-aaatccttgattttgcgatttaaatcgcgattttgagaacaatg 873  Q
    ||||||||||||||||| |||  ||||||||||| ||||| | |||||||  |||||| ||||||| |||||||||||| |||||||    
T  10958231 attctgcaatggatttgaatccttgaaggtgagtcaagtcgcaaaatcctgaattttgagatttaagtcgcgattttgacaacaatg 10958317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 408 - 531
Target Start/End: Original strand, 20432576 - 20432701
Alignment:
Q  408 atagtcataaatgactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgct 505  Q
    |||||||||||| ||||||| ||| |||||| | |||||||| ||  ||||||||| |||  ||| ||| ||||| || || |  |||||||||||| ||    
T  20432576 atagtcataaataactcaaaattttaagtccacaaaatacttttacataaatgactaaaatcttacatgacaaatgttttttattagtcataataatact 20432675  T
Q  506 aaacgacctagacaaaatacttaaag 531  Q
    |||| ||||| |||||||||||||||    
T  20432676 aaacaacctaaacaaaatacttaaag 20432701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 472 - 545
Target Start/End: Original strand, 4596888 - 4596961
Alignment:
Q  472 atgccaaatattcttcaggagtcataataatgctaaacgacctagacaaaatacttaaagcaaatcctagatgc 545  Q
    |||||||||||  || || ||| |||||||||||| || || |||||||||||||||||| |||||||||||||    
T  4596888 atgccaaatatcttttagtagtgataataatgctacacaacttagacaaaatacttaaagtaaatcctagatgc 4596961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 343 - 404
Target Start/End: Complemental strand, 31108412 - 31108351
Alignment:
Q  343 acttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    ||||||||| ||| ||| |||||||||||||||  |||| ||||||||||||||||||||||    
T  31108412 acttttgtacaatagatgtaggatagcaaaatcgtaaatcgtaaaatcgcaatcaaaatcga 31108351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 332 - 404
Target Start/End: Complemental strand, 31407577 - 31407505
Alignment:
Q  332 tttactcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    ||||||| ||||||||| ||  || |||||||| |||||||||||||||| |||||||| |||||||| ||||    
T  31407577 tttactcaactacttttatattatggatatagggtagcaaaatcaaaaatcgtaaaatcacaatcaaagtcga 31407505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 378
Target Start/End: Complemental strand, 1179177 - 1179047
Alignment:
Q  249 gttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaat-tgaaggattt-actcgactactt 346  Q
    ||||||||||||||||||||||||||  | ||||||  |  |  || || ||||||| |||| |||||| | |||| |||||||||| |||| |||||||    
T  1179177 gttgtcaaaatcgggattttgcttcaggttgaaaggtgaatggcaatttcaaaaatcctaaagtcgcaatcaaaatctgaaggattttactcaactactt 1179078  T
Q  347 ttgtagaatcgatataggatagcaaaatcaaa 378  Q
    |||||||||| || |||||||||||| |||||    
T  1179077 ttgtagaatcaat-taggatagcaaagtcaaa 1179047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 380
Target Start/End: Original strand, 7621749 - 7621884
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactac 344  Q
    ||||||||||| |||| |||||| |||   |||||||||| |||  ||||| |||||||| |||||  |  | | ||||||||| |||| |||| |||||    
T  7621749 aaggttgtcaagatcgagattttacttacgatcgaaagggaataacaaaatcgaaaaatcataaaactgttatcaaaattgaagaattttactcaactac 7621848  T
Q  345 ttttgtagaatcgatataggatagcaaaatcaaaaa 380  Q
    |||||||||||  ||||| |||||||||||| ||||    
T  7621849 ttttgtagaattaatatatgatagcaaaatcgaaaa 7621884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 409
Target Start/End: Complemental strand, 19748690 - 19748537
Alignment:
Q  243 ggcaaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgac 341  Q
    |||||||||||||||||||||| |||  ||||  | ||||||| |||| ||||| |  |  |||||||||||||| | |||| ||||||||| |||| |     
T  19748690 ggcaaggttgtcaaaatcgggactttaattcaggttgaaagggaatagcaaaatcgggat-tcgtaaaatcgcaatcaaaatcgaaggattttactcaag 19748592  T
Q  342 tacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
     |||||||||||||||||||||||             |||||||||||||||||||||||||||||||    
T  19748591 gacttttgtagaatcgatatagga-------------aattgtaaaatcgcaatcaaaatcgatggat 19748537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 362
Target Start/End: Complemental strand, 23898165 - 23898049
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgacta 343  Q
    |||| |||||||||||||||||||||||||  ||||| | | | || ||||| | | ||||||||||||| || | |||| |||||| ||||||| ||||    
T  23898165 caagattgtcaaaatcgggattttgcttcaggtcgaatgagaagagcaaaatcg-acaatcgtaaaatcgaaaccaaaatcgaaggattttactcaacta 23898067  T
Q  344 cttttgtagaatcgatata 362  Q
    | |||||||||||||||||    
T  23898066 c-tttgtagaatcgatata 23898049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 408 - 529
Target Start/End: Complemental strand, 31108303 - 31108183
Alignment:
Q  408 atagtcataaatgactcaaagtttcaagtccgctaaatacttat--ataaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgct 505  Q
    |||||||||||||||| ||||||  |||||||| |||||| |||  |||||| ||||||||  || ||| ||||| |||||  | ||||||||||||| |    
T  31108303 atagtcataaatgacttaaagttcaaagtccgcaaaatacatatacataaattactcaaagcctacatgtcaaatgttctttggtagtcataataatggt 31108204  T
Q  506 aaacgacctagacaaaatacttaa 529  Q
    ||   || ||||||||||||||||    
T  31108203 aa---acttagacaaaatacttaa 31108183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 365
Target Start/End: Original strand, 11327336 - 11327456
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    |||||||||||||||||||  ||| |||||  | ||||||| |||| ||||| || |  |||||||||||||| | |||| |||| |||| |||| |  |    
T  11327336 caaggttgtcaaaatcggggctttacttcaggttgaaagggaatagcaaaatcgagac-tcgtaaaatcgcaatcaaaatcgaagaattttactcaagga 11327434  T
Q  344 cttttgtagaatcgatatagga 365  Q
    ||||||||||||||||||||||    
T  11327435 cttttgtagaatcgatatagga 11327456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 409
Target Start/End: Complemental strand, 17103550 - 17103399
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    |||||||||||||||||||| ||| |||||| ||||||||| |||  |||||  |  | |||||||||||||| | | |  ||||||||| |||| |  |    
T  17103550 caaggttgtcaaaatcgggactttacttcaagtcgaaagggaataacaaaatc-aggactcgtaaaatcgcaatcaataccgaaggattttactcaagga 17103452  T
Q  344 cttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||             |||||||||||||||||||||||||||||||    
T  17103451 cttttgtagaatcgatatagga-------------aattgtaaaatcgcaatcaaaatcgatggat 17103399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Original strand, 7918244 - 7918275
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  7918244 aaattgtaaaatcgcaatcaaaatcgatggat 7918275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Original strand, 17543624 - 17543655
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  17543624 aaattgtaaaatcgcaatcaaaatcgatggat 17543655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 21355030 - 21354979
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaat 296  Q
    ||||||||||||||| |||||||| |||||| | ||||||| ||||||||||    
T  21355030 caaggttgtcaaaattgggattttacttcaagttgaaagggaatagaaaaat 21354979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Original strand, 26053190 - 26053221
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  26053190 aaattgtaaaatcgcaatcaaaatcgatggat 26053221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Original strand, 26073243 - 26073274
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  26073243 aaattgtaaaatcgcaatcaaaatcgatggat 26073274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 2912091 - 2912145
Alignment:
Q  302 aatcgtaaaatcgcaaacgaaattgaagga-tttactcgactacttttgtagaat 355  Q
    ||||||||||||  || ||||||||||||| ||||||| ||||||||||||||||    
T  2912091 aatcgtaaaatcataatcgaaattgaaggattttactcaactacttttgtagaat 2912145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 411 - 465
Target Start/End: Complemental strand, 7857149 - 7857093
Alignment:
Q  411 gtcataaatgactcaaagtttcaagtccgctaaatacttat--ataaatgactcaaa 465  Q
    ||||||||||||||||||||| | |||| | ||||||||||  ||||||||||||||    
T  7857149 gtcataaatgactcaaagtttgaggtccacaaaatacttatacataaatgactcaaa 7857093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 2e-40; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 271 - 580
Target Start/End: Original strand, 39845055 - 39845376
Alignment:
Q  271 ttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatataggatagc 369  Q
    ||||||||||||| | |||| ||||| ||||| | ||||||| ||||   |||||||| ||||| |||| |||| ||||||| | |||||||||||||||    
T  39845055 ttcaaatcgaaagagaatagcaaaatcgaaaatt-gtaaaattgcaattaaaattgaatgattttactcaactatttttgtaaagtcgatataggatagc 39845153  T
Q  370 aaaatcaaaaattgtaaaatcgcaatcaaaatcgatggatagt-------cataaatgactcaaagtttcaagtccgctaaatacttata--taaatgac 460  Q
    ||| || |||||  |||||||||||| |||||||||| ||  |       || |||| ||||||||||| |||||| | |||||||||||  ||||||||    
T  39845154 aaagtcgaaaatcataaaatcgcaattaaaatcgatgaattataccaaaacaaaaataactcaaagtttaaagtccacaaaatacttataaataaatgac 39845253  T
Q  461 tcaaagtttaaatgccaaatattcttcaggagtcataataatgctaaacgacctagacaaaatacttaaa---gcaaatcctagatgc---attacaaag 554  Q
    |||  |  || ||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||   |||| ||      
T  39845254 tca--gcctagatgccaaatattctttagtagtcataataatgctaaacaacctagacaaaatacttaaaaaggcaaatcctagatgcccgatta-aata 39845350  T
Q  555 cttgatcataagtgagtaagtgactc 580  Q
    ||||||||||||||||||||||||||    
T  39845351 cttgatcataagtgagtaagtgactc 39845376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 415 - 530
Target Start/End: Complemental strand, 22789352 - 22789235
Alignment:
Q  415 taaatgactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgctaaacgac 512  Q
    ||||||||||||||||  |||||| | |||||| ||||  ||||||||||||||  || ||| |||||| |||  || ||||||||||||||||||| ||    
T  22789352 taaatgactcaaagttcaaagtccacaaaatacatatacataaatgactcaaagcctatatgtcaaatactctatagtagtcataataatgctaaacaac 22789253  T
Q  513 ctagacaaaatacttaaa 530  Q
    ||| ||||||||||||||    
T  22789252 ctaaacaaaatacttaaa 22789235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 408 - 579
Target Start/End: Complemental strand, 24117655 - 24117478
Alignment:
Q  408 atagtcataaatgactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgct 505  Q
    |||||||||||||||||||| ||| |||| | | |||||| ||||  ||||||||||| |   || |||  |||||||||| ||  |||||||||||| |    
T  24117655 atagtcataaatgactcaaaatttaaagttcacaaaatacatatacataaatgactcagaacctagatgtgaaatattctttagttgtcataataatgat 24117556  T
Q  506 aaacgacctagacaaaatacttaaa--gcaaatcctagatgcattac--aaagcttgatcataagtgagtaagtgact 579  Q
    |||| ||||||| |||||| |||||  ||||||||||||||| | ||  ||  |||||||||||||||| ||||||||    
T  24117555 aaacaacctagataaaatatttaaaatgcaaatcctagatgcctaacataatacttgatcataagtgaggaagtgact 24117478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 362
Target Start/End: Complemental strand, 32881672 - 32881558
Alignment:
Q  248 ggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactactt 346  Q
    |||| |||||||||||||||||||||| || ||||| | | || ||||| | | ||||||||||||||||  ||||| |||||| ||||||| ||||| |    
T  32881672 ggttttcaaaatcgggattttgcttcagattgaaagagaaaagcaaaatcg-acaatcgtaaaatcgcaactgaaatcgaaggattttactcaactacgt 32881574  T
Q  347 ttgtagaatcgatata 362  Q
    ||||||||||||||||    
T  32881573 ttgtagaatcgatata 32881558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 375
Target Start/End: Complemental strand, 16434864 - 16434734
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    |||| ||||||||||| ||||||| ||  |  || |||||| |||| ||||| ||||| ||||||||| |||| | |||| ||||||||| ||||||| |    
T  16434864 caagattgtcaaaatcaggatttttctctaggtcaaaagggaatagcaaaatcgaaaa-tcgtaaaattgcaatcaaaatcgaaggattttactcgacaa 16434766  T
Q  344 cttttgtagaatcgatataggatagcaaaatc 375  Q
    |||||||||||| |||||| |||| |||||||    
T  16434765 cttttgtagaattgatataagataacaaaatc 16434734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 362
Target Start/End: Complemental strand, 13100547 - 13100428
Alignment:
Q  243 ggcaaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgac 341  Q
    |||||||||||||||||||||| ||| |||||| ||||||||| || | ||||| |  || |||||||||||||| | ||||  ||||| ||||||| |     
T  13100547 ggcaaggttgtcaaaatcgggactttacttcaagtcgaaagggaatggcaaaatcg-gaactcgtaaaatcgcaatcaaaatcaaaggattttactcaag 13100449  T
Q  342 tacttttgtagaatcgatata 362  Q
     || |||||||||||||||||    
T  13100448 gacatttgtagaatcgatata 13100428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 365
Target Start/End: Original strand, 14074258 - 14074377
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactac 344  Q
    ||||||||||||||| ||| ||| |||||  ||||||||| |||| |||||||  || || ||||||| ||| | |||| |||||| ||||||| |  ||    
T  14074258 aaggttgtcaaaatcaggactttacttcaggtcgaaagggaatagcaaaattg-gaactcataaaatcacaatcaaaatcgaaggattttactcaaggac 14074356  T
Q  345 ttttgtagaatcgatatagga 365  Q
    |||||||||||||||||||||    
T  14074357 ttttgtagaatcgatatagga 14074377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 402
Target Start/End: Original strand, 12002731 - 12002790
Alignment:
Q  343 acttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatc 402  Q
    ||||||||||||||||||||| |||||||||||   | | ||||||||||||||||||||    
T  12002731 acttttgtagaatcgatatagaatagcaaaatcgggactcgtaaaatcgcaatcaaaatc 12002790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 12002935 - 12003005
Alignment:
Q  449 tatataaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgctaaacgacctagacaa 520  Q
    ||||||||||||||||||  || |||| |||||||||| ||  |||||||||||||||||| ||||||||||    
T  12002935 tatataaatgactcaaagcctagatgc-aaatattctttagcggtcataataatgctaaacaacctagacaa 12003005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 409
Target Start/End: Original strand, 21242855 - 21242966
Alignment:
Q  300 aaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatataggatagcaaa-atcaaaaattgtaaaatcgcaatca 397  Q
    ||||||||||||||| ||    |||||||| |||| |||| |||| |||||||||||||||||| |||| ||||  | |||||| || ||||| ||||||    
T  21242855 aaaatcgtaaaatcgtaattacaattgaagaattttactcaactaattttgtagaatcgatataagataacaaatttgaaaaatcgttaaatcacaatca 21242954  T
Q  398 aaatcgatggat 409  Q
    ||||||||||||    
T  21242955 aaatcgatggat 21242966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 362
Target Start/End: Original strand, 41032547 - 41032664
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    ||||||||||||||| |||||||| |||||  | ||||| | | || |||||||| || ||||||||||||||   |||| |||| |||| |||| ||||    
T  41032547 caaggttgtcaaaatagggattttacttcaggttgaaagagaagagcaaaattgataa-tcgtaaaatcgcaactaaaatcgaagaattttactcaacta 41032645  T
Q  344 cttttgtagaatcgatata 362  Q
     ||||||||||||||||||    
T  41032646 gttttgtagaatcgatata 41032664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 410 - 516
Target Start/End: Complemental strand, 8773117 - 8773010
Alignment:
Q  410 agtcataaatgactcaaagtttcaagtccgctaaatacttat--ataaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgctaa 507  Q
    |||||||||||||| ||||||  |||||||| |||||  |||  |||||||||| ||||  || ||  ||||||||||| || |||||||||||||||||    
T  8773117 agtcataaatgacttaaagttcaaagtccgcaaaataaatatacataaatgacttaaagcctatat-acaaatattctttagtagtcataataatgctaa 8773019  T
Q  508 acgacctag 516  Q
    || ||||||    
T  8773018 acaacctag 8773010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 360
Target Start/End: Original strand, 17055751 - 17055808
Alignment:
Q  304 tcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgata 360  Q
    |||||||||||||| | |||| ||||||||| |||| |||||||||||||||||||||    
T  17055751 tcgtaaaatcgcaatcaaaatcgaaggattttactcaactacttttgtagaatcgata 17055808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 372
Target Start/End: Original strand, 17197306 - 17197430
Alignment:
Q  248 ggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactactt 346  Q
    |||| |||||||||||| ||| |||||| |||||||||  ||| ||||| |  || ||||||||||||||   |||| |||||| ||||||| |  ||||    
T  17197306 ggttatcaaaatcgggactttacttcaagtcgaaagggagtagcaaaatcg-gaactcgtaaaatcgcaactaaaatcgaaggattttactcaaggactt 17197404  T
Q  347 ttgtagaatcgatataggatagcaaa 372  Q
    |||||||||| || ||||||||||||    
T  17197405 ttgtagaatcaatgtaggatagcaaa 17197430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Original strand, 18304705 - 18304736
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  18304705 aaattgtaaaatcgcaatcaaaatcgatggat 18304736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Complemental strand, 23528891 - 23528860
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  23528891 aaattgtaaaatcgcaatcaaaatcgatggat 23528860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 363
Target Start/End: Original strand, 25146542 - 25146660
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgacta 343  Q
    |||||||||||||||| ||| ||| |||||  | ||||||| |||| ||||| | ||| |||||||||||||| | |||| |||||| ||||||| |       
T  25146542 caaggttgtcaaaatcaggactttacttcaggttgaaagggaatagcaaaatcggaaa-tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggt 25146640  T
Q  344 cttttgtagaatcgatatag 363  Q
    |||| |||||||||||||||    
T  25146641 ctttcgtagaatcgatatag 25146660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 408
Target Start/End: Original strand, 16125349 - 16125379
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatgga 408  Q
    |||||||||||||||||||||||||||||||    
T  16125349 aaattgtaaaatcgcaatcaaaatcgatgga 16125379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 406
Target Start/End: Original strand, 17869642 - 17869672
Alignment:
Q  376 aaaaattgtaaaatcgcaatcaaaatcgatg 406  Q
    |||||||||||||||||||||||||||||||    
T  17869642 aaaaattgtaaaatcgcaatcaaaatcgatg 17869672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 23528953 - 23528891
Alignment:
Q  304 tcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatatagga 365  Q
    |||||||||||||| | |||| ||||||||| |||| |  |||||||||||||||||||||||    
T  23528953 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatatagga 23528891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 13100323 - 13100294
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatgg 407  Q
    ||||||||||||||||||||||||||||||    
T  13100323 aaattgtaaaatcgcaatcaaaatcgatgg 13100294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 302 - 362
Target Start/End: Complemental strand, 47786157 - 47786096
Alignment:
Q  302 aatcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatata 362  Q
    |||||||||||| ||| | |||| ||||||||| |||| |||||||||||||||| ||||||    
T  47786157 aatcgtaaaatcacaaccaaaatcgaaggattttactcaactacttttgtagaattgatata 47786096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 4e-32; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 244 - 386
Target Start/End: Complemental strand, 19245945 - 19245803
Alignment:
Q  244 gcaaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgact 342  Q
    |||||||||||||||||||||||||||||||| | ||||||| |||| |||| | ||||||||||||||||||| | ||||  ||||| ||||||  |||    
T  19245945 gcaaggttgtcaaaatcgggattttgcttcaagttgaaagggaatagcaaaa-tcaaaaatcgtaaaatcgcaatcaaaatctaaggattttacttaact 19245847  T
Q  343 acttttgtagaatcgatataggatagcaaaatcaaaaattgtaa 386  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||    
T  19245846 acttttgtagaatcgatataggatagtaaaatcgaaaatcgtaa 19245803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 245 - 404
Target Start/End: Complemental strand, 974694 - 974534
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgacta 343  Q
    ||||||| |||| ||||||| ||| |||||| |||||||||  ||| ||||| | ||| |||||||||||||| | |||| |||||| ||||||| |  |    
T  974694 caaggttatcaatatcgggactttacttcaagtcgaaagggagtagcaaaatcggaaactcgtaaaatcgcaatcaaaatcgaaggattttactcaagga 974595  T
Q  344 cttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    |||||||||||||||||||||||||| || ||   | | ||||||||||||||||||||||    
T  974594 cttttgtagaatcgatataggatagcgaagtcgggactcgtaaaatcgcaatcaaaatcga 974534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 243 - 406
Target Start/End: Original strand, 21869093 - 21869256
Alignment:
Q  243 ggcaaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgac 341  Q
    |||||||| ||||||||||||| ||| |||||| ||||||||| |||||||||| |  |  || |||||||||||   |||| ||||||||| | || |     
T  21869093 ggcaaggtcgtcaaaatcgggactttacttcaagtcgaaagggaatagaaaaatcgggac-tcttaaaatcgcaattaaaatcgaaggattttattcaat 21869191  T
Q  342 tacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatg 406  Q
     |||||||||||||||||||| |||||||||||| | | | |||||||| |||||||||||||||    
T  21869192 gacttttgtagaatcgatatatgatagcaaaatcgagactcgtaaaatcccaatcaaaatcgatg 21869256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 253 - 404
Target Start/End: Original strand, 20034004 - 20034155
Alignment:
Q  253 tcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactacttttgta 351  Q
    |||||||||||| ||| |||||| |||||||||  ||| ||||| || |  |||||||||||||| | ||||||||||| ||||||| |  |||||||||    
T  20034004 tcaaaatcgggactttacttcaagtcgaaagggagtagcaaaatcgagac-tcgtaaaatcgcaatcaaaattgaaggattttactcaaggacttttgta 20034102  T
Q  352 gaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    |||||||| ||| |||||||| ||   | | ||||||||||||||||||||||    
T  20034103 gaatcgatgtagaatagcaaagtcgggactcgtaaaatcgcaatcaaaatcga 20034155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 408 - 680
Target Start/End: Complemental strand, 26251673 - 26251387
Alignment:
Q  408 atagtcataaatgactc-aaagtttcaagtccgctaaatacttat--ataaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgc 504  Q
    ||||||||||||||||| |||||||||||||| | |||||| |||  |||||| ||||||||| || ||  ||||||||||  ||  ||||| |||||||    
T  26251673 atagtcataaatgactcaaaagtttcaagtccacaaaatacctataaataaattactcaaagtctagatatcaaatattctctagtggtcatgataatgc 26251574  T
Q  505 taaacgacct-agacaaaatacttaaagcaaatcctagatgcattacaaa--gcttgatcataagtgagtaagtgac---------tcaaggcaaattag 592  Q
    ||||| | || |||||||||| |||| ||||||| ||||||| | |||||   ||||||||||| | |||| | |||         |||||||||   ||    
T  26251573 taaacaatctaagacaaaatatttaacgcaaatcatagatgcttgacaaaatacttgatcataaataagtacgagactcttaagtttcaaggcaa---ag 26251477  T
Q  593 atttgatgtcttacaaaatacttaatcataaataactc-aaagttcacgtccacaaaatacttaaa-gcaatgcctagatgcaatcataa 680  Q
    | | |||| || |||||||||||||||||||||||||| ||| |||| ||||||||||| | |||| |||| | || |||||||||||||    
T  26251476 actagatgactgacaaaatacttaatcataaataactcaaaatttcaagtccacaaaatccataaaggcaaagacttgatgcaatcataa 26251387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 409 - 531
Target Start/End: Original strand, 27749733 - 27749857
Alignment:
Q  409 tagtcataaatgactcaaagtttcaagtccgctaaatactt--atataaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgcta 506  Q
    ||||||||||||||||||||||  |||||  | |||||| |  | |||||||||||||||  || ||| |||||||| || || ||||||||||||| ||    
T  27749733 tagtcataaatgactcaaagttcaaagtctacaaaatacatacacataaatgactcaaagcctagatgtcaaatattatttagtagtcataataatgtta 27749832  T
Q  507 aacgacctagacaaaatacttaaag 531  Q
    ||| ||||| |||||||||||||||    
T  27749833 aacaacctaaacaaaatacttaaag 27749857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 246 - 361
Target Start/End: Complemental strand, 8428576 - 8428461
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactac 344  Q
    ||||||||||||||||||||||||||| |  ||||||||| ||||||||| | ||||||  ||||||||||| | |||| |||||| ||| ||| ||||     
T  8428576 aaggttgtcaaaatcgggattttgctttaggtcgaaagggaatagaaaaa-tcaaaaattctaaaatcgcaatcaaaatcgaaggattttgctcaactat 8428478  T
Q  345 ttttgtagaatcgatat 361  Q
    |||||||||||| ||||    
T  8428477 ttttgtagaatcaatat 8428461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 307 - 404
Target Start/End: Complemental strand, 34578183 - 34578085
Alignment:
Q  307 taaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    ||||||||||| | |||||||||||||| ||||    ||||||||||||||||| |||||||||||||||   | | ||||||||||||||||||||||    
T  34578183 taaaatcgcaatcaaaattgaaggattttactcatggacttttgtagaatcgatgtaggatagcaaaatcgggactcgtaaaatcgcaatcaaaatcga 34578085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 362
Target Start/End: Complemental strand, 16767140 - 16767023
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactac 344  Q
    |||||| |||| || || |||||||||||  || ||| || | || ||||| |||||||| ||||||||||| | ||||||||||| ||||||| |||||    
T  16767140 aaggttttcaacattggaattttgcttcaggtcaaaaaggaagagcaaaatcgaaaaatcataaaatcgcaatcaaaattgaaggattttactcaactac 16767041  T
Q  345 ttttgtagaatcgatata 362  Q
    |||| |||||||||||||    
T  16767040 ttttatagaatcgatata 16767023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 408 - 574
Target Start/End: Original strand, 21869304 - 21869472
Alignment:
Q  408 atagtcataaatgactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgct 505  Q
    |||||||||||| ||| ||||||  |||||| | |||||| ||||  ||||||||||||||  || |||| |||||| ||| || ||| ||||| ||| |    
T  21869304 atagtcataaataacttaaagttcaaagtccacaaaatacatatacataaatgactcaaagcatagatgc-aaatatactttagtagtgataatgatgtt 21869402  T
Q  506 aaacgacctagacaaaatacttaaa-gcaaatcctagatgcattacaaa--gcttgatcataagtgagtaag 574  Q
    |||  ||||| |||||||||||||| | ||||||||||||||| |||||   ||||||||||| ||||||||    
T  21869403 aaa--acctacacaaaatacttaaaagaaaatcctagatgcatgacaaaatacttgatcataaatgagtaag 21869472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 409 - 524
Target Start/End: Complemental strand, 19245742 - 19245621
Alignment:
Q  409 tagtcataaatgactcaaagtttcaagtccgctaaatacttat--ataaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatg--- 503  Q
    ||||||||||||||||||||||| |||||| | |||||||| |  |||||||||| |||| ||| || ||||| |||||| |  ||||||||||||        
T  19245742 tagtcataaatgactcaaagtttaaagtccacaaaatacttttgcataaatgactaaaagcttagataccaaaaattctttactagtcataataatcaat 19245643  T
Q  504 -ctaaacgacctagacaaaata 524  Q
     |||||| ||||||||||||||    
T  19245642 cctaaacaacctagacaaaata 19245621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 304 - 404
Target Start/End: Original strand, 27523928 - 27524029
Alignment:
Q  304 tcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatc 402  Q
    |||||||||||||| | |||| ||||||||| |||| |  ||||||||||||||||| |||||||||||| ||   | | ||||||| ||||||||||||    
T  27523928 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatgtaggatagcaaagtcgggactcgtaaaattgcaatcaaaatc 27524027  T
Q  403 ga 404  Q
    ||    
T  27524028 ga 27524029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 408 - 508
Target Start/End: Complemental strand, 974484 - 974383
Alignment:
Q  408 atagtcataaatgactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgct 505  Q
    |||||||||||||||| ||||||  |||||| | |||||| ||||  ||||||||||||||  || |||| |||||||||| || ||||||||||||| |    
T  974484 atagtcataaatgacttaaagttcaaagtccacaaaatacatatacataaatgactcaaagcctagatgc-aaatattctttagtagtcataataatgtt 974386  T
Q  506 aaa 508  Q
    |||    
T  974385 aaa 974383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 420 - 574
Target Start/End: Complemental strand, 19519527 - 19519370
Alignment:
Q  420 gactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgctaaacgacctaga 517  Q
    ||||||||||||||||| | | ||||||||| |  |||||||||||||   || ||| |||||||| || || ||||||||||||||| ||| ||   ||    
T  19519527 gactcaaagtttcaagttcacaaaatacttaaacataaatgactcaaaacctagatgtcaaatattatttagtagtcataataatgctgaacaac--gga 19519430  T
Q  518 caaaatactt-aaagcaaatcctagatgcattacaaa--gcttgatcataagtgagtaag 574  Q
    ||||||||||  | | ||||| |||||||||||||||   ||||||| ||||||||||||    
T  19519429 caaaatacttcgaggaaaatcatagatgcattacaaaatacttgatcctaagtgagtaag 19519370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 390
Target Start/End: Original strand, 27749283 - 27749428
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgacta 343  Q
    |||| ||||||||||| | ||||| ||||| |||||||||   ||| |||| ||| ||||||||||||||||| | |||||||| || ||||||| |  |    
T  27749283 caagtttgtcaaaatcagtattttacttcagatcgaaaggaattagtaaaa-tgacaaatcgtaaaatcgcaatctaaattgaatgagtttactcaagga 27749381  T
Q  344 cttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatc 390  Q
     |||||||||||||| ||| |||||| ||| |  |||| ||||||||    
T  27749382 tttttgtagaatcgaaatacgatagccaaaacgcaaatcgtaaaatc 27749428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 19245902 - 19245865
Alignment:
Q  365 atagcaaaatcaaaaattgtaaaatcgcaatcaaaatc 402  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  19245902 atagcaaaatcaaaaatcgtaaaatcgcaatcaaaatc 19245865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 365
Target Start/End: Complemental strand, 20064078 - 20063958
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    |||||||||||||||||||  ||| |||||  | ||||||| |||| ||||| || |  |||||||||||||| | |||| |||| |||| |||| |  |    
T  20064078 caaggttgtcaaaatcggggctttacttcaggttgaaagggaatagcaaaatcgagac-tcgtaaaatcgcaatcaaaatcgaagaattttactcaagga 20063980  T
Q  344 cttttgtagaatcgatatagga 365  Q
    ||||||||||||||||||||||    
T  20063979 cttttgtagaatcgatatagga 20063958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 362
Target Start/End: Original strand, 25538920 - 25539036
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactac 344  Q
    ||||||||||||||||| | ||| | |||  ||||||||| |||||||||| |     |||||||||||||| | ||||| |||||||| |||  |||||    
T  25538920 aaggttgtcaaaatcggtactttacatcaggtcgaaagggaatagaaaaatcgggtc-tcgtaaaatcgcaatcaaaattaaaggattttactgaactac 25539018  T
Q  345 ttttgtagaatcgatata 362  Q
    ||||||||||||||||||    
T  25539019 ttttgtagaatcgatata 25539036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 8428535 - 8428491
Alignment:
Q  365 atagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||||    
T  8428535 atagaaaaatcaaaaattctaaaatcgcaatcaaaatcgaaggat 8428491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 362
Target Start/End: Original strand, 13502448 - 13502564
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggat-ttactcgacta 343  Q
    ||||||||||||||| |  |||||| ||||| | ||||||| | || ||||| ||||| ||||||||||| || | |||||||||||| ||| || ||||    
T  13502448 caaggttgtcaaaattga-attttgtttcaagtggaaagggaagagtaaaatcgaaaa-tcgtaaaatcgtaatcaaaattgaaggatattagtcaacta 13502545  T
Q  344 cttttgtagaatcgatata 362  Q
     |||||||||||| |||||    
T  13502546 tttttgtagaatctatata 13502564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 19519647 - 19519586
Alignment:
Q  340 actacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaat 401  Q
    |||| ||||| | |||||||||| |||| ||||||  ||||| |||||||||||||||||||    
T  19519647 actatttttgcaaaatcgatatatgataacaaaattgaaaatcgtaaaatcgcaatcaaaat 19519586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 332 - 409
Target Start/End: Complemental strand, 24474102 - 24474025
Alignment:
Q  332 tttactcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||| |||||||||||  |||| ||||| ||||  |||||  |||||||||||||| |||| ||||||| |||||    
T  24474102 tttactcaactacttttgtttaatcaatataagataataaaattgaaaattgtaaaatcacaattaaaatcgttggat 24474025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 779 - 832
Target Start/End: Original strand, 27146154 - 27146207
Alignment:
Q  779 agtttttggattctgcaatggatttggatcgatgaaggtgagtaaagtcacaaa 832  Q
    ||||||| |||||| ||||  ||||||| ||||||||||||||||| |||||||    
T  27146154 agtttttcgattctacaatcaatttggaacgatgaaggtgagtaaaatcacaaa 27146207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 247 - 405
Target Start/End: Complemental strand, 4575083 - 4574925
Alignment:
Q  247 aggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggatt-tactcgactact 345  Q
    ||||||||||||| | |||||| |||||  | ||||||| |||| |||||  ||||||||||||||||||| | ||||  ||| ||| ||||| ||||||    
T  4575083 aggttgtcaaaattgagatttttcttcaggttgaaagggaatagtaaaatc-aaaaatcgtaaaatcgcaatcaaaatcaaagaattctactcaactact 4574985  T
Q  346 tttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgat 405  Q
    ||||||||||||||||||||||| |||||  ||||| ||||||||||| |||||||||||    
T  4574984 tttgtagaatcgatataggatagtaaaattgaaaatcgtaaaatcgcagtcaaaatcgat 4574925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 408 - 546
Target Start/End: Original strand, 1981306 - 1981445
Alignment:
Q  408 atagtcataaatgactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgct 505  Q
    |||||||||||||||| ||||||  |||||| | |||||| ||||  ||||||||||||||  || |||| |||||||||| || ||||||||| |||||    
T  1981306 atagtcataaatgact-aaagttcaaagtccacaaaatacatatacataaatgactcaaagcctagatgc-aaatattctttagtagtcataatgatgct 1981403  T
Q  506 aaacgacctagacaaaatacttaaa-gcaaatcctagatgca 546  Q
    |||  |||||||||||||||||||| |||||||||| |||||    
T  1981404 aaataacctagacaaaatacttaaaggcaaatcctaaatgca 1981445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 245 - 362
Target Start/End: Complemental strand, 39182511 - 39182394
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    ||||||||||||||||| ||||||||||||  || |||| | | |||||||| || || |||||||||||||| | |||| ||||||||| |||| ||||    
T  39182511 caaggttgtcaaaatcgtgattttgcttcagttccaaagagaagagaaaaatcgacaa-tcgtaaaatcgcaaccaaaatcgaaggattttactcaacta 39182413  T
Q  344 cttttgtagaatcgatata 362  Q
    |||||||||||||||||||    
T  39182412 cttttgtagaatcgatata 39182394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 246 - 362
Target Start/End: Original strand, 22687042 - 22687158
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactac 344  Q
    |||||||| |||||||||||||||||||| |||||||| | | || ||||| | | |||||||||||| ||| | ||||||||| | ||||||| |||||    
T  22687042 aaggttgttaaaatcgggattttgcttcagatcgaaagagaagagcaaaatcg-agaatcgtaaaatcacaaccaaaattgaagaattttactcaactac 22687140  T
Q  345 ttttgtagaatcgatata 362  Q
    ||||||||||||||||||    
T  22687141 ttttgtagaatcgatata 22687158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 245 - 404
Target Start/End: Original strand, 1981099 - 1981256
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggatttactcgactac 344  Q
    ||||||| |||||||||||| ||| |||||| |||||||||  |||||||||||  || ||||||||||| || | |||| |||||| |||||| |   |    
T  1981099 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagaaaaattg-gaactcgtaaaatcgtaatcaaaatcgaagga-ttactcaaggtc 1981196  T
Q  345 ttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    ||| |||||||||||||||||||||||| ||   | | ||||||| ||||||||||||||    
T  1981197 tttagtagaatcgatataggatagcaaagtcgggactcgtaaaattgcaatcaaaatcga 1981256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 345 - 404
Target Start/End: Complemental strand, 7307265 - 7307206
Alignment:
Q  345 ttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    |||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||    
T  7307265 ttttgtagaatcgatataggatagcaaaatcgcaaatcgtaaaatcgcaatcaaaatcga 7307206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 452 - 545
Target Start/End: Complemental strand, 7307113 - 7307019
Alignment:
Q  452 ataaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgctaaacgacctagacaaaatacttaaa-gcaaatcctagatgc 545  Q
    |||||||||||||||  || ||| ||||||||||| || ||||||||||||||||||| | ||||||||||||| |||| |||||| ||||||||    
T  7307113 ataaatgactcaaagactagatgacaaatattctttagtagtcataataatgctaaacaagctagacaaaatacctaaaggcaaattctagatgc 7307019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 477 - 543
Target Start/End: Complemental strand, 8304161 - 8304094
Alignment:
Q  477 aaatattcttcaggagtcataataatgctaaacgacctagacaaaatacttaaa-gcaaatcctagat 543  Q
    ||||||||||  | ||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  8304161 aaatattctttggtagtcataataatgctaaacaacctagacaaaatacttaaaggcaaatcctagat 8304094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 404
Target Start/End: Original strand, 25842505 - 25842664
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    ||||||| ||||||| |||| ||| |||||| |||||||||  ||| ||||| |  |  |||||||||||||| | |||||| ||||||| ||||    |    
T  25842505 caaggttatcaaaattgggactttacttcaagtcgaaagggagtagcaaaatcgggac-tcgtaaaatcgcaatcaaaattggaggattttactcatgaa 25842603  T
Q  344 cttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    |||||||||||||||| |||||||||||| ||   | | ||||||||||||||||||||||    
T  25842604 cttttgtagaatcgatgtaggatagcaaagtcgggactcgtaaaatcgcaatcaaaatcga 25842664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 345 - 400
Target Start/End: Original strand, 8629602 - 8629657
Alignment:
Q  345 ttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaa 400  Q
    |||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||||    
T  8629602 ttttgtagaatcgatacaggatagtaaaatcataaatcgtaaaatcgcaatcaaaa 8629657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 366
Target Start/End: Original strand, 21157521 - 21157588
Alignment:
Q  300 aaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactacttttgtagaatcgatataggat 366  Q
    |||||||||||||| ||| | ||||||||||| |||| || ||||||||||||||||| |||||||||    
T  21157521 aaaatcgtaaaatctcaatcaaaattgaaggattttattcaactacttttgtagaatctatataggat 21157588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 8304383 - 8304282
Alignment:
Q  304 tcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatc 402  Q
    |||||||||| ||| | |||| ||||||||| |||| |  ||||||||||||| ||||||||||||||||||   || |  |||||| ||||||||||||    
T  8304383 tcgtaaaatcacaatcaaaatcgaaggattttactcaaggacttttgtagaattgatataggatagcaaaattggaactcataaaattgcaatcaaaatc 8304284  T
Q  403 ga 404  Q
    ||    
T  8304283 ga 8304282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 362
Target Start/End: Complemental strand, 14055610 - 14055495
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactac 344  Q
    ||||||||||||||||| |||||||||||  ||||||| |   || ||||| || || | |||||||||||| | |||| ||||||||| |||| |||||    
T  14055610 aaggttgtcaaaatcgg-attttgcttcaggtcgaaagagatgagcaaaatcgacaa-tggtaaaatcgcaaccaaaatcgaaggattttactcaactac 14055513  T
Q  345 ttttgtagaatcgatata 362  Q
    |||||||||| |||||||    
T  14055512 ttttgtagaaacgatata 14055495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 362
Target Start/End: Complemental strand, 14365638 - 14365523
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactac 344  Q
    ||||||||||||||||| |||||||||||  ||||||| |   || ||||| || || | |||||||||||| | |||| ||||||||| |||| |||||    
T  14365638 aaggttgtcaaaatcgg-attttgcttcaggtcgaaagagatgagcaaaatcgacaa-tggtaaaatcgcaaccaaaatcgaaggattttactcaactac 14365541  T
Q  345 ttttgtagaatcgatata 362  Q
    |||||||||| |||||||    
T  14365540 ttttgtagaaacgatata 14365523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 5058766 - 5058734
Alignment:
Q  376 aaaaattgtaaaatcgcaatcaaaatcgatgga 408  Q
    |||||||||||||||||||||||||||||||||    
T  5058766 aaaaattgtaaaatcgcaatcaaaatcgatgga 5058734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 10285677 - 10285748
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaa 317  Q
    |||||||||||||||||||||||| |||||  ||||||| | | ||||||| | || ||||||||||||||||    
T  10285677 caaggttgtcaaaatcgggattttacttcaggtcgaaagagaagagaaaaa-tcaacaatcgtaaaatcgcaa 10285748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 377 - 409
Target Start/End: Complemental strand, 17811584 - 17811552
Alignment:
Q  377 aaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    |||||||||||||||||||||||||||||||||    
T  17811584 aaaattgtaaaatcgcaatcaaaatcgatggat 17811552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Original strand, 24725366 - 24725397
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  24725366 aaattgtaaaatcgcaatcaaaatcgatggat 24725397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 26565376 - 26565439
Alignment:
Q  300 aaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatata 362  Q
    ||||||||||||||| || | |||| ||||||||| |||| ||||||||||||||||| |||||    
T  26565376 aaaatcgtaaaatcgtaatcaaaatcgaaggattttactcaactacttttgtagaatcaatata 26565439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 414 - 521
Target Start/End: Complemental strand, 4574865 - 4574756
Alignment:
Q  414 ataaatgactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgctaaacga 511  Q
    ||||||| |||||| ||| || ||| | ||||||||| |  |||||||||||||  ||  ||| ||||||||||| || |||| |||||||||||| | |    
T  4574865 ataaatggctcaaaatttaaactccacaaaatacttagacttaaatgactcaaaacttggatgtcaaatattctttagtagtcgtaataatgctaagcaa 4574766  T
Q  512 cctagacaaa 521  Q
    ||||||||||    
T  4574765 cctagacaaa 4574756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 8329873 - 8329935
Alignment:
Q  301 aaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatata 362  Q
    ||||||||||||||||| | ||||  |||||||| |||| |||||||||||||||| ||||||    
T  8329873 aaatcgtaaaatcgcaatcaaaatcaaaggattttactcaactacttttgtagaattgatata 8329935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 405
Target Start/End: Original strand, 26340244 - 26340306
Alignment:
Q  343 acttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgat 405  Q
    |||||| ||||||||||||| ||||  |||||  ||||| |||||||| ||||||||||||||    
T  26340244 acttttatagaatcgatataagatataaaaattgaaaatcgtaaaatcacaatcaaaatcgat 26340306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 8329809 - 8329870
Alignment:
Q  302 aatcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatata 362  Q
    |||| |||||| |||| | |||||||||||||| |||| |||||||||||||||| ||||||    
T  8329809 aatcataaaattgcaatcaaaattgaaggattttactcaactacttttgtagaattgatata 8329870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 811 - 863
Target Start/End: Original strand, 17809440 - 17809493
Alignment:
Q  811 tgaaggtgagtaaagtcac-aaatccttgattttgcgatttaaatcgcgatttt 863  Q
    ||||||||||||||||||| |||||||  |||||| ||||||| ||||||||||    
T  17809440 tgaaggtgagtaaagtcacaaaatcctgaattttgggatttaagtcgcgatttt 17809493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 376 - 405
Target Start/End: Original strand, 26617369 - 26617398
Alignment:
Q  376 aaaaattgtaaaatcgcaatcaaaatcgat 405  Q
    ||||||||||||||||||||||||||||||    
T  26617369 aaaaattgtaaaatcgcaatcaaaatcgat 26617398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 48621428 - 48621532
Alignment:
Q  244 gcaaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgact 342  Q
    ||||||||||||| || |  ||||| ||||||||| |||||  |||  ||||| ||||| ||||||||||||||  ||||||||| || ||||||| |||    
T  48621428 gcaaggttgtcaacattgaaattttacttcaaatctaaaggaaataacaaaatcgaaaa-tcgtaaaatcgcaattgaaattgaaagattttactcaact 48621526  T
Q  343 actttt 348  Q
    ||||||    
T  48621527 actttt 48621532  T

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Target: chr4 (Bit Score: 62; Significance: 3e-26; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 245 - 362
Target Start/End: Complemental strand, 7452860 - 7452744
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggatttactcgactac 344  Q
    |||||||||||||||  |||||||||||||  ||||||||| | |||||| ||||||| |||||||||||||| | |||| ||||||||||||| |||||    
T  7452860 caaggttgtcaaaattaggattttgcttcaggtcgaaagggaagagaaaagttgaaaa-tcgtaaaatcgcaatcaaaatcgaaggatttactcaactac 7452762  T
Q  345 ttttgtagaatcgatata 362  Q
    |||||||||||| |||||    
T  7452761 ttttgtagaatcaatata 7452744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 408 - 525
Target Start/End: Complemental strand, 20812687 - 20812568
Alignment:
Q  408 atagtcataaatgactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgct 505  Q
    ||||||||||||||||||||||||||||||  | |||||||||||  |||||||| |||||  || ||| ||||||||||| || |||||||||||||||    
T  20812687 atagtcataaatgactcaaagtttcaagtctacaaaatacttataaataaatgacacaaagcatatatgtcaaatattctttagtagtcataataatgct 20812588  T
Q  506 aaacgacctagacaaaatac 525  Q
    |||| ||||||| |||||||    
T  20812587 aaacaacctagataaaatac 20812568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 408 - 522
Target Start/End: Original strand, 8743748 - 8743864
Alignment:
Q  408 atagtcataaatgactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgct 505  Q
    |||||||||||||||||||||||| |||||  | |||||||| ||  |||||||||||||| ||| ||| ||||||||||| || ||||||||||||| |    
T  8743748 atagtcataaatgactcaaagtttaaagtctacaaaatacttgtacataaatgactcaaagcttagatgtcaaatattctttagtagtcataataatgtt 8743847  T
Q  506 aaacgacctagacaaaa 522  Q
    |||| ||||||||||||    
T  8743848 aaacaacctagacaaaa 8743864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 245 - 404
Target Start/End: Complemental strand, 55476343 - 55476184
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    ||||||| |||||||||||| ||| |||||| |||||||||  ||  ||||| |  |  |||||||||||||| | |||| ||||||||| |||| |  |    
T  55476343 caaggttatcaaaatcgggactttacttcaagtcgaaagggagtaataaaatcggtac-tcgtaaaatcgcaatcaaaatcgaaggattttactcaagga 55476245  T
Q  344 cttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    ||||||||||||||||||| ||||||||| ||  || | ||||||||||||||||||||||    
T  55476244 cttttgtagaatcgatataagatagcaaagtcggaactcgtaaaatcgcaatcaaaatcga 55476184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 449 - 576
Target Start/End: Original strand, 18437598 - 18437728
Alignment:
Q  449 tatataaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgctaaacgacctagacaaaatacttaaag-caaatcctagatgcat 547  Q
    |||||||| |||||||| | |||||| |||||||| || || |||||| |||||| ||||| ||||| ||||||||||||||| |||||||||||||  |    
T  18437598 tatataaacgactcaaaatctaaatgtcaaatattttttagtagtcatgataatgttaaacaacctaaacaaaatacttaaagacaaatcctagatgttt 18437697  T
Q  548 tacaaa--gcttgatcataagtgagtaagtg 576  Q
     |||||   |||||||||||||||| |||||    
T  18437698 gacaaaatacttgatcataagtgagaaagtg 18437728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 242 - 355
Target Start/End: Complemental strand, 8889574 - 8889462
Alignment:
Q  242 aggcaaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggat-ttactcga 340  Q
    |||||||||||||||||||||||||||||||||  ||||||| | | || ||||||| | ||| |||||||||||| | |||| ||||||| |||||| |    
T  8889574 aggcaaggttgtcaaaatcgggattttgcttcaggtcgaaagag-agagcaaaattg-acaattgtaaaatcgcaaccaaaatcgaaggatcttactcaa 8889477  T
Q  341 ctacttttgtagaat 355  Q
    |||||||||||||||    
T  8889476 ctacttttgtagaat 8889462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 245 - 365
Target Start/End: Complemental strand, 10394965 - 10394845
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgacta 343  Q
    ||||||||||||||| || |||||||||||| | |||| |  | || |||||  ||||||||||||||||||| | |||| |||||| ||||||| ||||    
T  10394965 caaggttgtcaaaattggaattttgcttcaagttgaaaagaaagagcaaaatc-aaaaatcgtaaaatcgcaatcaaaatcgaaggactttactcaacta 10394867  T
Q  344 cttttgtagaatcgatatagga 365  Q
    |||||||||||||| |||||||    
T  10394866 cttttgtagaatcggtatagga 10394845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 449 - 576
Target Start/End: Complemental strand, 18327801 - 18327670
Alignment:
Q  449 tatataaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgctaaacgacctagacaaaatacttaaag-caaatcctagatgcat 547  Q
    |||||||| |||||||| | |||||| |||||||| || || |||||| |||||| ||||| ||||| ||||||||||||||| |||||||||||||  |    
T  18327801 tatataaacgactcaaaatctaaatgtcaaatattttttagtagtcatgataatgttaaacaacctaaacaaaatacttaaagacaaatcctagatgttt 18327702  T
Q  548 tacaa---agcttgatcataagtgagtaagtg 576  Q
     ||||   | |||||||||||||||| |||||    
T  18327701 gacaaaataacttgatcataagtgagaaagtg 18327670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 332 - 410
Target Start/End: Original strand, 5845971 - 5846050
Alignment:
Q  332 tttactcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcg-caatcaaaatcgatggata 410  Q
    ||||||| |||| |||||||||||| ||||||||||||||||| ||||||  |||||||| |||||||||| ||||||||    
T  5845971 tttactcaactatttttgtagaatcaatataggatagcaaaataaaaaatcataaaatcgccaatcaaaatagatggata 5846050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 355
Target Start/End: Original strand, 6346729 - 6346839
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgacta 343  Q
    |||||||||||||||||| | |||||||||  ||||||||| | || ||||| | |||||||||||||| ||| | |||| |||||| ||||||| ||||    
T  6346729 caaggttgtcaaaatcggaaatttgcttcaggtcgaaagggaagagcaaaatcg-aaaatcgtaaaatcacaatcaaaatcgaaggattttactcaacta 6346827  T
Q  344 cttttgtagaat 355  Q
    ||||||||||||    
T  6346828 cttttgtagaat 6346839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 8367499 - 8367398
Alignment:
Q  304 tcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatc 402  Q
    ||||||||| |||| | |||| ||||||||| |||| |  ||||| |||  ||||||||||||||||||||||| |||||||||||| ||||| ||||||    
T  8367499 tcgtaaaattgcaatcaaaatcgaaggattttactcaaggactttggtaatatcgatataggatagcaaaatcataaattgtaaaattgcaattaaaatc 8367400  T
Q  403 ga 404  Q
    ||    
T  8367399 ga 8367398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 27528191 - 27528123
Alignment:
Q  244 gcaaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaat 312  Q
    |||||||||||||||||| |||||| ||||| |||||||||| |||  ||||| |||||||||||||||    
T  27528191 gcaaggttgtcaaaatcgagattttacttcatatcgaaagggaataacaaaatcgaaaaatcgtaaaat 27528123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 358
Target Start/End: Complemental strand, 4157377 - 4157269
Alignment:
Q  253 tcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaa--atcgtaaaatcgcaaacgaaattgaagga-tttactcgactacttttg 349  Q
    |||||||||||||||||||| || ||||||||| | || ||||| |||||  || |||||||||||| | | || ||| || ||||||| ||||||||||    
T  4157377 tcaaaatcgggattttgctttaagtcgaaagggaagagcaaaatcgaaaatcattgtaaaatcgcaatcaagatcgaaagattttactcaactacttttg 4157278  T
Q  350 tagaatcga 358  Q
    |||||||||    
T  4157277 tagaatcga 4157269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 358
Target Start/End: Complemental strand, 4157664 - 4157556
Alignment:
Q  253 tcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaa--atcgtaaaatcgcaaacgaaattgaagga-tttactcgactacttttg 349  Q
    |||||||||||||||||||| || ||||||||| | || ||||| |||||  || |||||||||||| | | || ||| || ||||||| ||||||||||    
T  4157664 tcaaaatcgggattttgctttaagtcgaaagggaagagcaaaatcgaaaatcattgtaaaatcgcaatcaagatcgaaagattttactcaactacttttg 4157565  T
Q  350 tagaatcga 358  Q
    |||||||||    
T  4157564 tagaatcga 4157556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 332 - 409
Target Start/End: Original strand, 5884141 - 5884218
Alignment:
Q  332 tttactcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||| |||| |||||||||||| ||||||||||| |||||  |||||  ||||||| |||||||||| |||||||    
T  5884141 tttactcaactatttttgtagaatcaatataggatagaaaaattcaaaatcataaaatcacaatcaaaatagatggat 5884218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 362
Target Start/End: Complemental strand, 17466433 - 17466317
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggatt-tactcgactac 344  Q
    |||||||||||||  || |||||||||||| ||||||| |   || ||||| || || ||||||||| |||||| |||||||| |||| ||||| |||||    
T  17466433 aaggttgtcaaaactggcattttgcttcaagtcgaaagagctgagcaaaatcgacaa-tcgtaaaattgcaaacaaaattgaaagattatactcaactac 17466335  T
Q  345 ttttgtagaatcgatata 362  Q
    |||||| |||||||||||    
T  17466334 ttttgtggaatcgatata 17466317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 302 - 362
Target Start/End: Complemental strand, 37240538 - 37240477
Alignment:
Q  302 aatcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatata 362  Q
    |||||||||||||||| | |||| ||||||||| |||| |||||||||||||||||||||||    
T  37240538 aatcgtaaaatcgcaatcaaaatcgaaggattttactcaactacttttgtagaatcgatata 37240477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 362
Target Start/End: Complemental strand, 24719923 - 24719813
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgacta 343  Q
    ||||||||||||||||| ||||||||||||  ||||||||| | || ||||| |||||||||  ||||| |      ||| |||||| ||||||||| ||    
T  24719923 caaggttgtcaaaatcgagattttgcttcaggtcgaaagggaagagcaaaatcgaaaaatcg--aaatcac------aatcgaaggattttactcgatta 24719832  T
Q  344 cttttgtagaatcgatata 362  Q
    |||||||||||||||||||    
T  24719831 cttttgtagaatcgatata 24719813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 5943086 - 5943145
Alignment:
Q  299 aaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactacttttgtagaatcg 357  Q
    |||||||||||||||||||   ||||||||||| ||||||| ||||||||||||||||||    
T  5943086 aaaaatcgtaaaatcgcaagtaaaattgaaggattttactcaactacttttgtagaatcg 5943145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 365
Target Start/End: Original strand, 23064737 - 23064855
Alignment:
Q  247 aggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactact 345  Q
    |||||||||||||||||| ||| |||||  ||||||||| |||   |||| | ||  |||||||||||||| | ||||||||||| |||| || |  |||    
T  23064737 aggttgtcaaaatcgggactttacttcaggtcgaaagggaataacgaaatcggaac-tcgtaaaatcgcaatcaaaattgaaggattttattcaaggact 23064835  T
Q  346 tttgtagaatcgatatagga 365  Q
    ||||||||||||||||||||    
T  23064836 tttgtagaatcgatatagga 23064855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 792 - 826
Target Start/End: Original strand, 5884496 - 5884530
Alignment:
Q  792 tgcaatggatttggatcgatgaaggtgagtaaagt 826  Q
    |||||||||||||||||||||||||||||||||||    
T  5884496 tgcaatggatttggatcgatgaaggtgagtaaagt 5884530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 5361795 - 5361856
Alignment:
Q  302 aatcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatata 362  Q
    ||||||||||| |||||| |||| ||||| ||| |||| |||||||||||||||||||||||    
T  5361795 aatcgtaaaattgcaaacaaaatcgaagggttttactcaactacttttgtagaatcgatata 5361856  T

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Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 404
Target Start/End: Complemental strand, 10394921 - 10394884
Alignment:
Q  367 agcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  10394921 agcaaaatcaaaaatcgtaaaatcgcaatcaaaatcga 10394884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 15982742 - 15982787
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatag 290  Q
    ||||||||||||||| |||||||||||||| |||||||||| ||||    
T  15982742 caaggttgtcaaaattgggattttgcttcagatcgaaaggggatag 15982787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 332 - 400
Target Start/End: Original strand, 8743626 - 8743694
Alignment:
Q  332 tttactcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaa 400  Q
    ||||||| ||||| |||||| |||||||||||| ||| |||||| ||||| |||| |||||||| ||||    
T  8743626 tttactcaactacatttgtataatcgatataggctagtaaaatcgaaaatcgtaatatcgcaattaaaa 8743694  T

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Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Original strand, 6346849 - 6346880
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  6346849 aaattgtaaaatcgcaatcaaaatcgatggat 6346880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 362
Target Start/End: Complemental strand, 10143250 - 10143138
Alignment:
Q  248 ggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactactt 346  Q
    |||| ||||||| | |||||| ||||||||| |||| | |||| |||||| || |||||||||||||||| | |||| |||||| |||| || |||| ||    
T  10143250 ggttatcaaaattgagatttt-cttcaaatcaaaagag-atagcaaaatt-aacaatcgtaaaatcgcaatcaaaatcgaaggattttattcaactaatt 10143154  T
Q  347 ttgtagaatcgatata 362  Q
    ||||||||||||||||    
T  10143153 ttgtagaatcgatata 10143138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 353 - 404
Target Start/End: Complemental strand, 18403788 - 18403737
Alignment:
Q  353 aatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    ||||||||||| |||||||||| | ||||  |||||||||||||||||||||    
T  18403788 aatcgatatagcatagcaaaattataaataataaaatcgcaatcaaaatcga 18403737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 375
Target Start/End: Original strand, 18459405 - 18459535
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    ||||||||||||||||| ||||||||||||  | ||||||  | || ||||| | | ||||||||||||||||   |||| ||||||||| |||  ||||    
T  18459405 caaggttgtcaaaatcgagattttgcttcaggttgaaaggaaagagcaaaatcg-acaatcgtaaaatcgcaattaaaatcgaaggatttgacttaacta 18459503  T
Q  344 cttttgtagaatcgatataggatagcaaaatc 375  Q
     ||||||||||| |||||| || | |||||||    
T  18459504 attttgtagaattgatataagaaatcaaaatc 18459535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Complemental strand, 36121058 - 36121027
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  36121058 aaattgtaaaatcgcaatcaaaatcgatggat 36121027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 358
Target Start/End: Complemental strand, 7045299 - 7045186
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgacta 343  Q
    ||||||||||||||| || ||||| |||||  ||||||||| | || |||| | ||||||| ||||||||||| | |||| |||||| ||||||| |||     
T  7045299 caaggttgtcaaaataggaattttacttcaggtcgaaagggaagagcaaaa-tcaaaaatcataaaatcgcaatcaaaatcgaaggattttactcaactg 7045201  T
Q  344 cttttgtagaatcga 358  Q
    |||||  ||||||||    
T  7045200 cttttcaagaatcga 7045186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 409
Target Start/End: Complemental strand, 7045255 - 7045213
Alignment:
Q  367 agcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    |||||||||||||||  ||||||||||||||||||||| ||||    
T  7045255 agcaaaatcaaaaatcataaaatcgcaatcaaaatcgaaggat 7045213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 408
Target Start/End: Original strand, 9911305 - 9911335
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatgga 408  Q
    |||||||||||||||||||||||||||||||    
T  9911305 aaattgtaaaatcgcaatcaaaatcgatgga 9911335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 409
Target Start/End: Complemental strand, 20812820 - 20812734
Alignment:
Q  324 ttgaaggattt-actcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||| |||| | ||||||||||| ||  | ||||||| |||||||  |||||| ||||||||||||||| ||||| ||||    
T  20812820 ttgaaggattttactcaattacttttgtaggatataaataggatggcaaaattgaaaattttaaaatcgcaatcaagatcgaaggat 20812734  T

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Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 8020578 - 8020611
Alignment:
Q  343 acttttgtagaatcgatataggatagcaaaatca 376  Q
    ||||||||||||| ||||||||||||||||||||    
T  8020578 acttttgtagaatagatataggatagcaaaatca 8020611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 10143214 - 10143169
Alignment:
Q  364 gatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||| || ||| |||||||||||||||||||||| ||||    
T  10143214 gatagcaaaattaacaatcgtaaaatcgcaatcaaaatcgaaggat 10143169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 1e-22; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 244 - 402
Target Start/End: Original strand, 8592172 - 8592330
Alignment:
Q  244 gcaaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgact 342  Q
    ||||||||||| ||||||||| ||| |||||| ||||||||  |||| ||||| || |  |||||||||||||| | |||| ||||||||| |||| |      
T  8592172 gcaaggttgtcgaaatcgggactttacttcaagtcgaaaggaaatagcaaaatcgagac-tcgtaaaatcgcaatcaaaatcgaaggattttactcaagg 8592270  T
Q  343 acttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatc 402  Q
    |||||||||||||||||||||||||||||||||     | ||||||||||||||||||||    
T  8592271 acttttgtagaatcgatataggatagcaaaatcgggtctcgtaaaatcgcaatcaaaatc 8592330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 408 - 579
Target Start/End: Original strand, 6861110 - 6861286
Alignment:
Q  408 atagtcataaatgactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgct 505  Q
    |||||||||||||| || |||||| |||| | | ||| | |||||  || ||||||||||   || |||||||||||| || || | |||||||||||||    
T  6861110 atagtcataaatgattcgaagtttaaagtgcacaaaacatttatacatatatgactcaaaacctagatgccaaatattatttagtaatcataataatgct 6861209  T
Q  506 aaacgacctagacaaaatacttaaa-gcaaatcctagatgcattacaaa--gcttgatcataagtgagtaagtgact 579  Q
    |||| |||||||||||||||| ||| || |||||||||||  | |||||   ||||||||||||||| |||||||||    
T  6861210 aaacaacctagacaaaatactcaaaggcgaatcctagatgtctgacaaaacacttgatcataagtgattaagtgact 6861286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 245 - 404
Target Start/End: Complemental strand, 27090797 - 27090645
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    |||||||||| |||||| |||||| ||| |  ||||||||| |||||||||||| ||| |||||| |||||||   |||| ||||||||| |||| |  |    
T  27090797 caaggttgtcgaaatcgagattttactttaggtcgaaagggaatagaaaaattgcaaa-tcgtaagatcgcaataaaaatcgaaggattttactcaagga 27090699  T
Q  344 cttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
     ||||||| |||||||||||||||||||||||       ||||||||||||||||||||||    
T  27090698 attttgtataatcgatataggatagcaaaatc-------gtaaaatcgcaatcaaaatcga 27090645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 246 - 362
Target Start/End: Original strand, 10872490 - 10872606
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactac 344  Q
    ||||||||||||||| ||||||| |||||  || |||||| | ||||||||  ||||||| ||||||||||| | ||||||||||| ||||||  |||||    
T  10872490 aaggttgtcaaaatcaggattttacttcaggtcaaaagggaagagaaaaatc-aaaaatcataaaatcgcaatcaaaattgaaggattttactaaactac 10872588  T
Q  345 ttttgtagaatcgatata 362  Q
    ||||| ||||||||||||    
T  10872589 ttttgaagaatcgatata 10872606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 408 - 552
Target Start/End: Original strand, 8566196 - 8566341
Alignment:
Q  408 atagtcataaatgactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgct 505  Q
    |||||||||||||||| ||||||  |||||| | |||||| ||||  ||||||||||||||  || |||| || ||||||| || |||||||||||||||    
T  8566196 atagtcataaatgact-aaagttcgaagtccacaaaatacatatacataaatgactcaaagcctagatgc-aattattctttagtagtcataataatgct 8566293  T
Q  506 aaacgacctagacaaaatacttaaa-gcaaatcctagatgcattacaa 552  Q
    ||   ||||||| |||||||||||| |||||||||| |||||| ||||    
T  8566294 aactaacctagaaaaaatacttaaaggcaaatcctaaatgcatgacaa 8566341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 362
Target Start/End: Complemental strand, 27676792 - 27676674
Alignment:
Q  244 gcaaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgact 342  Q
    |||| ||||| |||||| |||||||||||||| ||||||||| | || ||||| | |||||| ||||||||||| | |||| ||| || ||||||| |||    
T  27676792 gcaaagttgttaaaatcaggattttgcttcaagtcgaaagggaagagcaaaatcg-aaaatcttaaaatcgcaatcaaaatcgaaagattttactcaact 27676694  T
Q  343 acttttgtagaatcgatata 362  Q
    ||||||||| ||||||||||    
T  27676693 acttttgtaaaatcgatata 27676674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 241 - 362
Target Start/End: Complemental strand, 13286303 - 13286182
Alignment:
Q  241 taggcaaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcg 339  Q
    ||||||||||||||||||||   |||||||||||  ||| ||||| | ||||||||  |||| |||||||||||||| | ||||  || ||||| ||||     
T  13286303 taggcaaggttgtcaaaatcacaattttgcttcaggtcggaagggaagagaaaaatc-aaaactcgtaaaatcgcaatcaaaatcaaaagattttactca 13286205  T
Q  340 actacttttgtagaatcgatata 362  Q
    |||||||||||||||||||||||    
T  13286204 actacttttgtagaatcgatata 13286182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 244 - 353
Target Start/End: Complemental strand, 41671535 - 41671426
Alignment:
Q  244 gcaaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgact 342  Q
    |||||||||||||||||||||||||||||||  ||||||| | | || ||||| | | ||| |||||||||||| | |||| |||||| ||||||| |||    
T  41671535 gcaaggttgtcaaaatcgggattttgcttcaggtcgaaagagaagagcaaaatcg-ataattgtaaaatcgcaaccaaaatcgaaggattttactcaact 41671437  T
Q  343 acttttgtaga 353  Q
    |||||||||||    
T  41671436 acttttgtaga 41671426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 406
Target Start/End: Original strand, 8560231 - 8560392
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    ||||||| |||||||||||| ||| |||||| || ||||||  ||| ||||| || |  |||| ||||||||| | |||| ||||||||| |||| |       
T  8560231 caaggttatcaaaatcgggactttacttcaagtcaaaagggagtagcaaaatcgagac-tcgtgaaatcgcaatcaaaatcgaaggattttactcaaggt 8560329  T
Q  344 cttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatg 406  Q
     |||||||||||| ||||||||||||||| ||   | | ||||||||||||||||||||||||    
T  8560330 tttttgtagaatcaatataggatagcaaagtcgggactcgtaaaatcgcaatcaaaatcgatg 8560392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 26208316 - 26208254
Alignment:
Q  347 ttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||| |||||| |||| |||||||||||||||||| |||||||||||| ||||| |||||||    
T  26208316 ttgtaaaatcgacatagaatagcaaaatcaaaaattctaaaatcgcaattaaaattgatggat 26208254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 362
Target Start/End: Original strand, 6136340 - 6136460
Alignment:
Q  242 aggcaaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcga 340  Q
    ||||||| |||||||||||   ||||||||||| |||| ||||| | || |||||  ||||||||||||||||||| | ||||  || ||||| |||| |    
T  6136340 aggcaagtttgtcaaaatcacaattttgcttcatatcggaagggaaaagcaaaatc-aaaaatcgtaaaatcgcaatcaaaatcaaaagattttactcaa 6136438  T
Q  341 ctacttttgtagaatcgatata 362  Q
    |||||||| |||||||||||||    
T  6136439 ctacttttatagaatcgatata 6136460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 362
Target Start/End: Complemental strand, 17064661 - 17064545
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactac 344  Q
    |||||||||||||| ||||||||||||||  |||||||   | |  ||||| || || |||||||||||||| | |||| ||||||||| |||| |||||    
T  17064661 aaggttgtcaaaattgggattttgcttcaggtcgaaagaaaagatcaaaatcgacaa-tcgtaaaatcgcaatcaaaatcgaaggattttactcaactac 17064563  T
Q  345 ttttgtagaatcgatata 362  Q
    |||||||||||| |||||    
T  17064562 ttttgtagaatcaatata 17064545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 404
Target Start/End: Complemental strand, 3041570 - 3041419
Alignment:
Q  253 tcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgta 351  Q
    |||||||||||||||| |||||| |||||| ||  ||| ||||| |  |  |||||||||||||| | |||| ||||||||| |||| |  |||||||||    
T  3041570 tcaaaatcgggattttacttcaagtcgaaatggagtagcaaaatcgggac-tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgta 3041472  T
Q  352 gaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    ||| |||| |||||||||||| ||   | | ||||||||||||| ||||||||    
T  3041471 gaaacgatgtaggatagcaaagtcgggactcgtaaaatcgcaattaaaatcga 3041419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 13006174 - 13006092
Alignment:
Q  250 ttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt 334  Q
    |||||||||||||||||| |||| |  ||||||||| |||| ||||||||||| |||||||||||||| | |||||||| |||||    
T  13006174 ttgtcaaaatcgggattt-gctttaggtcgaaagggaatagcaaaattgaaaa-tcgtaaaatcgcaatcaaaattgaatgattt 13006092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 362
Target Start/End: Complemental strand, 42697202 - 42697086
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    |||||||||||||||| |||||||||||||  ||||| | | | ||||||  |  | ||| ||||||||||||   |||||||||||||| | || ||||    
T  42697202 caaggttgtcaaaatcaggattttgcttcaggtcgaatgagaagagaaaa--tcgacaattgtaaaatcgcaactaaaattgaaggattttattcaacta 42697105  T
Q  344 cttttgtagaatcgatata 362  Q
    |||||||||||||||||||    
T  42697104 cttttgtagaatcgatata 42697086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 362
Target Start/End: Original strand, 3449084 - 3449201
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    ||||||||||||||| |||||||||||| |  | ||||| | | || ||||| || || |||||||||||||| | |||| ||| ||||| | || ||||    
T  3449084 caaggttgtcaaaattgggattttgctttaggttgaaagagaagagcaaaatcgacaa-tcgtaaaatcgcaaccaaaatcgaatgattttattcaacta 3449182  T
Q  344 cttttgtagaatcgatata 362  Q
    |||||||||||||||||||    
T  3449183 cttttgtagaatcgatata 3449201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 360
Target Start/End: Complemental strand, 17796918 - 17796805
Alignment:
Q  247 aggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactact 345  Q
    ||||| ||||||| | ||||||| ||||  ||||||||| | ||||||||  |||||||||||||| ||||   |||| |||| |||| |||| ||||||    
T  17796918 aggttatcaaaattgagattttgattcaggtcgaaagggaaaagaaaaata-aaaaatcgtaaaattgcaattaaaatcgaagcattttactcaactact 17796820  T
Q  346 tttgtagaatcgata 360  Q
    |||||||||||||||    
T  17796819 tttgtagaatcgata 17796805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 360
Target Start/End: Complemental strand, 19105358 - 19105245
Alignment:
Q  247 aggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactact 345  Q
    ||||| ||||||| | ||||||| ||||  ||||||||| | ||||||||  |||||||||||||| ||||   |||| |||| |||| |||| ||||||    
T  19105358 aggttatcaaaattgagattttgattcaggtcgaaagggaaaagaaaaata-aaaaatcgtaaaattgcaattaaaatcgaagcattttactcaactact 19105260  T
Q  346 tttgtagaatcgata 360  Q
    |||||||||||||||    
T  19105259 tttgtagaatcgata 19105245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 477 - 571
Target Start/End: Original strand, 20766864 - 20766961
Alignment:
Q  477 aaatattcttcaggagtcataataatgctaaacgacctagacaaaatacttaaa-gcaaatcctagatgcattacaaa--gcttgatcataagtgagt 571  Q
    |||||||||| || ||||||||||||| ||||| ||||| |||||||||| ||| |||||| |||||||| | |||||   |||||||| ||||||||    
T  20766864 aaatattctttagtagtcataataatgttaaacaacctaaacaaaatactcaaaggcaaattctagatgcctaacaaaatacttgatcacaagtgagt 20766961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 362
Target Start/End: Original strand, 25870096 - 25870213
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgacta 343  Q
    ||||||||||||||||| |||||||||| |  ||||||| | | || ||||| | | |||||||||||||||| | ||||  ||||| ||||||| ||||    
T  25870096 caaggttgtcaaaatcgagattttgctttaggtcgaaagagaagagtaaaatcg-acaatcgtaaaatcgcaaccaaaatcaaaggattttactcaacta 25870194  T
Q  344 cttttgtagaatcgatata 362  Q
      |||||||||||||||||    
T  25870195 agtttgtagaatcgatata 25870213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 18014288 - 18014187
Alignment:
Q  304 tcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatc 402  Q
    |||||||||||||| | |||| ||||||||| |||| |  |||||| || || ||||||||||||||||| ||   | | ||||||||||||||||||||    
T  18014288 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttataaaaccgatataggatagcaaagtcgggactcgtaaaatcgcaatcaaaatc 18014189  T
Q  403 ga 404  Q
    ||    
T  18014188 ga 18014187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 404
Target Start/End: Original strand, 21553764 - 21553825
Alignment:
Q  343 acttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    ||||||||||||| |||||||||||||||| ||   | | ||||||||||||||||||||||    
T  21553764 acttttgtagaattgatataggatagcaaagtcgggactcgtaaaatcgcaatcaaaatcga 21553825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 22971106 - 22971005
Alignment:
Q  304 tcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatc 402  Q
    |||||||||||||| | |||| ||||||||| |||| |  ||||||||||||| ||| |||||||||||| ||   | | ||||||| ||||||||||||    
T  22971106 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaattgatgtaggatagcaaagtcccgactcgtaaaattgcaatcaaaatc 22971007  T
Q  403 ga 404  Q
    ||    
T  22971006 ga 22971005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 442 - 535
Target Start/End: Complemental strand, 26207669 - 26207574
Alignment:
Q  442 aaatacttata--taaatgactcaaagtttaaatgccaaatat-tcttcaggagtcataataatgctaaacgacctagacaaaatacttaaagcaaa 535  Q
    |||||||||||  ||||||||| ||||| || ||| ||||||| |||| || |||||||||||||| |||| || |||||||||||||||| |||||    
T  26207669 aaatacttatacataaatgacttaaagtctagatgtcaaatatgtctt-agtagtcataataatgcgaaacaacttagacaaaatacttaaggcaaa 26207574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 367 - 402
Target Start/End: Original strand, 6136387 - 6136422
Alignment:
Q  367 agcaaaatcaaaaattgtaaaatcgcaatcaaaatc 402  Q
    ||||||||||||||| ||||||||||||||||||||    
T  6136387 agcaaaatcaaaaatcgtaaaatcgcaatcaaaatc 6136422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Complemental strand, 20756257 - 20756226
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  20756257 aaattgtaaaatcgcaatcaaaatcgatggat 20756226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Original strand, 25870216 - 25870247
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  25870216 aaattgtaaaatcgcaatcaaaatcgatggat 25870247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Complemental strand, 28746011 - 28745980
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  28746011 aaattgtaaaatcgcaatcaaaatcgatggat 28745980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Complemental strand, 39428138 - 39428107
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  39428138 aaattgtaaaatcgcaatcaaaatcgatggat 39428107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 6860986 - 6861036
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaat 296  Q
    |||||||||||||| ||||||||||||||  ||||||||| |||| |||||    
T  6860986 aaggttgtcaaaattgggattttgcttcaggtcgaaagggaatagtaaaat 6861036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 362
Target Start/End: Complemental strand, 28136117 - 28136000
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    |||||||||||||||  ||||||| |||||| |  ||| |||| || ||||| || || |||||||||||| | | |||| ||||||||| |||| ||||    
T  28136117 caaggttgtcaaaattaggattttacttcaagttaaaatggtagagtaaaatcgagaa-tcgtaaaatcgctatcaaaatcgaaggattttactcaacta 28136019  T
Q  344 cttttgtagaatcgatata 362  Q
    |||||||| ||| ||||||    
T  28136018 cttttgtaaaattgatata 28136000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 15806222 - 15806279
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaa 302  Q
    ||||||||||||||||| ||||||||||||  ||||||||| | || ||||| |||||    
T  15806222 caaggttgtcaaaatcgagattttgcttcagctcgaaagggaaaagcaaaatcgaaaa 15806279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 343 - 404
Target Start/End: Complemental strand, 19348810 - 19348749
Alignment:
Q  343 acttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    |||||| || |||||||||||||||||||| ||   | | ||||||||||||||||||||||    
T  19348810 acttttataaaatcgatataggatagcaaattcgggactcgtaaaatcgcaatcaaaatcga 19348749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 364 - 401
Target Start/End: Complemental strand, 52519885 - 52519848
Alignment:
Q  364 gatagcaaaatcaaaaattgtaaaatcgcaatcaaaat 401  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  52519885 gatagcaaaatcgaaaattgtaaaatcgcaatcgaaat 52519848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 8e-18; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 245 - 355
Target Start/End: Original strand, 29384086 - 29384196
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgacta 343  Q
    ||||||||||||||||||||||||||||||  |||||||   | |||||||| | | |||||||||||||||| | |||| |||||| ||||||| ||||    
T  29384086 caaggttgtcaaaatcgggattttgcttcaggtcgaaagaaaagagaaaaatcg-acaatcgtaaaatcgcaaccaaaatcgaaggattttactcaacta 29384184  T
Q  344 cttttgtagaat 355  Q
    ||||||||||||    
T  29384185 cttttgtagaat 29384196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 245 - 362
Target Start/End: Original strand, 22909978 - 22910094
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgacta 343  Q
    |||||||||||||||||| ||||| | |||  ||||||| | | |||||||| || || |||||||||||||| ||||||||||||| |||| || ||||    
T  22909978 caaggttgtcaaaatcgg-attttacatcatgtcgaaagagaagagaaaaatcgacaa-tcgtaaaatcgcaaccgaaattgaaggattttattcaacta 22910075  T
Q  344 cttttgtagaatcgatata 362  Q
     ||||||||||||||||||    
T  22910076 tttttgtagaatcgatata 22910094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 404
Target Start/End: Complemental strand, 2040464 - 2040315
Alignment:
Q  255 aaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtaga 353  Q
    |||||||||| ||| |||||| ||||||| |  ||| ||||| | ||  |||||||||||||| | |||| ||||||||| ||||    |||||||||||    
T  2040464 aaaatcgggactttacttcaagtcgaaagagagtagcaaaatcggaac-tcgtaaaatcgcaatcaaaatcgaaggattttactcatggacttttgtaga 2040366  T
Q  354 atcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    |||||| |||||||||||| ||   | | ||||||||||||||||||||||    
T  2040365 atcgatgtaggatagcaaagtcgggactcgtaaaatcgcaatcaaaatcga 2040315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 362
Target Start/End: Complemental strand, 6811174 - 6811057
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgacta 343  Q
    |||||||||||||||||| | |||| ||||||||||||| | | || ||||| | | |||||||||||||||| | |||| |||| | |||| || ||||    
T  6811174 caaggttgtcaaaatcggaactttgtttcaaatcgaaagagaagagcaaaatcg-acaatcgtaaaatcgcaaccaaaatcgaagaattttaatcaacta 6811076  T
Q  344 cttttgtagaatcgatata 362  Q
    |||||||||||| ||||||    
T  6811075 cttttgtagaatagatata 6811057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 362
Target Start/End: Original strand, 15761132 - 15761249
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgacta 343  Q
    ||||||||| ||||| |||||||||||||||  |||||||| | |   |||||| | ||||||||||||||||   |||| |||||| ||||||| | ||    
T  15761132 caaggttgttaaaattgggattttgcttcaagccgaaagggaagaatgaaattg-agaatcgtaaaatcgcaatataaatcgaaggattttactcaatta 15761230  T
Q  344 cttttgtagaatcgatata 362  Q
    |||||||||||||||||||    
T  15761231 cttttgtagaatcgatata 15761249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 287 - 409
Target Start/End: Original strand, 26574933 - 26575048
Alignment:
Q  287 atagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgta 385  Q
    |||||||||||||| | |||||||||||||| | ||||||||||| |||||   |||| || ||||||||  ||||||||||||||||||       |||    
T  26574933 atagaaaaattgaata-tcgtaaaatcgcaatcaaaattgaaggattttacctaactatttatgtagaattcatataggatagcaaaatc-------gta 26575024  T
Q  386 aaatcgcaatcaaaatcgatggat 409  Q
    |||| |||||||||||||||||||    
T  26575025 aaatagcaatcaaaatcgatggat 26575048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 409
Target Start/End: Complemental strand, 17647351 - 17647201
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactac 344  Q
    |||||||| ||||||||||||||||||||  ||||||| |   || ||||| || || || ||||||||||| | |||| ||||||||| |||| ||||     
T  17647351 aaggttgttaaaatcgggattttgcttcaggtcgaaagagatgagcaaaatcgacaa-tcataaaatcgcaatcaaaatcgaaggattttactcaactag 17647253  T
Q  345 ttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    |||||||||||||||||| ||             |||||||||||||||||||||||||||||||    
T  17647252 ttttgtagaatcgatataaga-------------aattgtaaaatcgcaatcaaaatcgatggat 17647201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 363
Target Start/End: Original strand, 7489057 - 7489175
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgacta 343  Q
    |||||||||||||||| ||| ||| |||||| ||||||||  |||| |||||| |  | |||||||||||||| | |||| | |||| ||||||| |  |    
T  7489057 caaggttgtcaaaatcaggactttacttcaagtcgaaaggaaatagcaaaatt-aggactcgtaaaatcgcaatcaaaatcggaggattttactcaagga 7489155  T
Q  344 cttttgtagaatcgatatag 363  Q
    ||||||||||||||||||||    
T  7489156 cttttgtagaatcgatatag 7489175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 354
Target Start/End: Complemental strand, 17566454 - 17566344
Alignment:
Q  244 gcaaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgact 342  Q
    |||||||| | |||||| |||||||||||||  || |||||| | || ||||||| ||||||||||||| |||| | |||| |||| | ||||||| |||    
T  17566454 gcaaggtttttaaaatcaggattttgcttcaggtcaaaagggaagagcaaaattg-aaaatcgtaaaattgcaatcaaaatcgaagaattttactcaact 17566356  T
Q  343 acttttgtagaa 354  Q
    ||||||||||||    
T  17566355 acttttgtagaa 17566344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 365
Target Start/End: Complemental strand, 5922400 - 5922283
Alignment:
Q  248 ggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactactt 346  Q
    ||||||||||||||||| ||| |||||  ||||||||| |||| |||||   || || ||| |||||||| | |||| |||||| ||||||| |  ||||    
T  5922400 ggttgtcaaaatcgggactttacttcaggtcgaaagggaatagcaaaatcagaacat-gtacaatcgcaatcaaaatcgaaggattttactcaagaactt 5922302  T
Q  347 ttgtagaatcgatatagga 365  Q
    |||||||||||||||||||    
T  5922301 ttgtagaatcgatatagga 5922283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 362
Target Start/End: Complemental strand, 15231976 - 15231859
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgacta 343  Q
    ||||||||| ||| ||| ||||||||||||| ||||||| | | || ||||| | | ||||||||||||||||   |||| | | || ||||||| ||||    
T  15231976 caaggttgttaaattcgagattttgcttcaagtcgaaagagaagagcaaaatcg-acaatcgtaaaatcgcaactaaaatcgtacgattttactcaacta 15231878  T
Q  344 cttttgtagaatcgatata 362  Q
    |||||||||||||||||||    
T  15231877 cttttgtagaatcgatata 15231859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 367 - 409
Target Start/End: Complemental strand, 26879821 - 26879779
Alignment:
Q  367 agcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||| ||||||||||||||||||| |||||||    
T  26879821 agcaaaatcaaaaatcgtaaaatcgcaatcaaaattgatggat 26879779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 792 - 873
Target Start/End: Original strand, 30240677 - 30240759
Alignment:
Q  792 tgcaatggatttggatcgatgaaggtgagtaaagtc-acaaatccttgattttgcgatttaaatcgcgattttgagaacaatg 873  Q
    |||||||||||| |||||| |||||||| ||||||| | |||||||  |||||   ||||||||||||||||||| |||||||    
T  30240677 tgcaatggatttagatcgacgaaggtgaataaagtcgaaaaatcctatattttagaatttaaatcgcgattttgataacaatg 30240759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 402
Target Start/End: Original strand, 40541594 - 40541751
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    ||||||| |||||||||||| ||| |||||| ||||||||   ||| ||||| |  |  |||||||||||||| | |||||||| ||||| | || |  |    
T  40541594 caaggttatcaaaatcgggactttacttcaagtcgaaaggaagtagcaaaatcgggac-tcgtaaaatcgcaatcaaaattgaaagattttattcaagga 40541692  T
Q  344 cttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatc 402  Q
    ||| ||||||||||||||| ||||||||| ||   | | ||||||||||||||||||||    
T  40541693 cttctgtagaatcgatataagatagcaaagtcgggactcgtaaaatcgcaatcaaaatc 40541751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 334
Target Start/End: Complemental strand, 11879955 - 11879867
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt 334  Q
    |||||||||||||||||||||||| |||||  || |||||| |||| ||||| |  || |||||||||||||| | |||| |||||||||    
T  11879955 caaggttgtcaaaatcgggattttacttcaggtcaaaagggaatagtaaaatcg-gaactcgtaaaatcgcaatcaaaatcgaaggattt 11879867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 334
Target Start/End: Complemental strand, 11897371 - 11897283
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt 334  Q
    |||||||||||||||||||||||| |||||  || |||||| |||| ||||| |  || |||||||||||||| | |||| |||||||||    
T  11897371 caaggttgtcaaaatcgggattttacttcaggtcaaaagggaatagtaaaatcg-gaactcgtaaaatcgcaatcaaaatcgaaggattt 11897283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 11973942 - 11974022
Alignment:
Q  248 ggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaag 329  Q
    ||||||||||||| ||||||||| ||| || ||||| | |||| ||||| | |||||| ||||||||||| |||||||||||    
T  11973942 ggttgtcaaaatcaggattttgcatcagattgaaagagaatagcaaaatcg-aaaatcataaaatcgcaatcgaaattgaag 11974022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 365
Target Start/End: Original strand, 24414062 - 24414181
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactac 344  Q
    |||||||||||||| || | ||| |||||  ||||||||| |||| |||||| | |  |||||||||||||| | |||| ||||||||| |||| |  |     
T  24414062 aaggttgtcaaaattggaactttacttcatgtcgaaagggaatagcaaaatttagac-tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaat 24414160  T
Q  345 ttttgtagaatcgatatagga 365  Q
    |||||||||||||||||||||    
T  24414161 ttttgtagaatcgatatagga 24414181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 365
Target Start/End: Complemental strand, 45403379 - 45403264
Alignment:
Q  250 ttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactactttt 348  Q
    ||||||||||||||| |||  ||||  ||||||||| |||| ||||| || |  |||||||||||||| | |||| ||||||||| |||  |  ||||||    
T  45403379 ttgtcaaaatcgggactttatttcacgtcgaaagggaatagcaaaatcgagac-tcgtaaaatcgcaatcaaaatcgaaggattttacttaaagactttt 45403281  T
Q  349 gtagaatcgatatagga 365  Q
    |||||||||||||||||    
T  45403280 gtagaatcgatatagga 45403264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Complemental strand, 15294802 - 15294771
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  15294802 aaattgtaaaatcgcaatcaaaatcgatggat 15294771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Complemental strand, 15475171 - 15475140
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  15475171 aaattgtaaaatcgcaatcaaaatcgatggat 15475140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 408
Target Start/End: Complemental strand, 23142409 - 23142379
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatgga 408  Q
    |||||||||||||||||||||||||||||||    
T  23142409 aaattgtaaaatcgcaatcaaaatcgatgga 23142379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 362
Target Start/End: Original strand, 24056348 - 24056461
Alignment:
Q  249 gttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactacttt 347  Q
    |||||||||| || ||||||||||||  ||||||||| | || ||||||| || ||| |||||| | || | |||| |||||| ||||||| |||| |||    
T  24056348 gttgtcaaaaccgagattttgcttcaggtcgaaagggaagagcaaaattg-aatatcataaaatggtaatcaaaatcgaaggattttactcaactagttt 24056446  T
Q  348 tgtagaatcgatata 362  Q
    ||||||||| |||||    
T  24056447 tgtagaatcaatata 24056461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 452 - 574
Target Start/End: Original strand, 40541849 - 40541973
Alignment:
Q  452 ataaatgactcaaagtttaaatgccaaatattcttcaggagtcataataatgctaaacgacctagacaaaatacttaaa-gcaaatcctagatgcattac 550  Q
    |||||||||||||||  || |||| |||| ||||| || |||||||||||||  |||  |||||||||||| ||||||| | |||||||| |||| | ||    
T  40541849 ataaatgactcaaagcatagatgc-aaatgttctttagtagtcataataatggcaaataacctagacaaaacacttaaaggaaaatcctaaatgcctgac 40541947  T
Q  551 aaa--gcttgatcataagtgagtaag 574  Q
    |||   |||||||| |||||||||||    
T  40541948 aaaatacttgatcacaagtgagtaag 40541973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 376 - 409
Target Start/End: Original strand, 3094248 - 3094281
Alignment:
Q  376 aaaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    |||||| |||||||||||||||||||||||||||    
T  3094248 aaaaatcgtaaaatcgcaatcaaaatcgatggat 3094281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 7489176 - 7489205
Alignment:
Q  377 aaaattgtaaaatcgcaatcaaaatcgatg 406  Q
    ||||||||||||||||||||||||||||||    
T  7489176 aaaattgtaaaatcgcaatcaaaatcgatg 7489205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 16752320 - 16752219
Alignment:
Q  304 tcgtaaaatcgcaaacgaaattgaagga-tttactcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatc 402  Q
    |||||||||||||||| |||| |||||| ||||||| |  | ||||||||||| ||| ||||| |||||| ||   | | |||| |||||||||||||||    
T  16752320 tcgtaaaatcgcaaacaaaatcgaaggattttactcaaggaattttgtagaattgatgtaggaaagcaaagtcgggactggtaacatcgcaatcaaaatc 16752221  T
Q  403 ga 404  Q
    ||    
T  16752220 ga 16752219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 246 - 383
Target Start/End: Complemental strand, 145942 - 145805
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactac 344  Q
    |||||||||||||| | ||||||||||||  |||||||   ||||  |||| | ||||||||||||| |||| | |||| |||||| |||||||   |||    
T  145942 aaggttgtcaaaattgagattttgcttcaggtcgaaagaaaatagttaaatcg-aaaatcgtaaaatagcaatcaaaatcgaaggattttactcacttac 145844  T
Q  345 ttttgtagaatcgatataggatagcaaaatcaaaaattg 383  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  145843 ttttgtagaatcgatataagatagcaaaatctaaaattg 145805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 45; Significance: 5e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 301 - 404
Target Start/End: Complemental strand, 142929 - 142825
Alignment:
Q  301 aaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaa 399  Q
    ||||| |||||||||||   |||||||||||||| |||| |  | ||||||||||| |||||||||||||||||||  ||||| ||||||| ||||||||    
T  142929 aaatcctaaaatcgcaattaaaattgaaggattttactcaaggagttttgtagaatagatataggatagcaaaatcccaaattctaaaatctcaatcaaa 142830  T
Q  400 atcga 404  Q
    |||||    
T  142829 atcga 142825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 409
Target Start/End: Original strand, 56199 - 56350
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    ||||||||||||||||| || ||| |||||  ||||||||| |||| ||||| || | ||| ||||||||||| | |||| ||||||||| |||| |  |    
T  56199 caaggttgtcaaaatcgagactttacttcaggtcgaaagggaatagcaaaatcgagacatc-taaaatcgcaatcaaaatcgaaggattttactcaagga 56297  T
Q  344 cttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||             |||||||||||||||||||||||||||||||    
T  56298 cttttgtagaatcgatatagga-------------aattgtaaaatcgcaatcaaaatcgatggat 56350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 365
Target Start/End: Complemental strand, 8796 - 8676
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgacta 343  Q
    ||||||| |||||||||||| ||| |||||  ||||||||| |||  ||||| | ||  |||||||||||||| | ||||||||||| ||||||| | ||    
T  8796 caaggttctcaaaatcgggactttacttcaggtcgaaagggaataacaaaatcggaac-tcgtaaaatcgcaatcaaaattgaaggattttactcaagta 8698  T
Q  344 cttttgtagaatcgatatagga 365  Q
     ||| |||||||||||||||||    
T  8697 ttttcgtagaatcgatatagga 8676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 378 - 409
Target Start/End: Complemental strand, 8676 - 8645
Alignment:
Q  378 aaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||||||||||||||||||||    
T  8676 aaattgtaaaatcgcaatcaaaatcgatggat 8645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 304 - 404
Target Start/End: Original strand, 14758 - 14859
Alignment:
Q  304 tcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatc 402  Q
    |||||||||||||| | |||| ||||||||| | || |  ||||||||||||||||| |||||||||||| ||   | | ||||||||||||||||||||    
T  14758 tcgtaaaatcgcaatcaaaatcgaaggattttattcaaagacttttgtagaatcgatgtaggatagcaaagtcgggactcgtaaaatcgcaatcaaaatc 14857  T
Q  403 ga 404  Q
    ||    
T  14858 ga 14859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 362
Target Start/End: Original strand, 61089 - 61205
Alignment:
Q  246 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactac 344  Q
    ||||||| |||||||||||||||||||||  || |||| | | || ||||||  |||||||||||||| ||| | |||| |||| | ||||||  |||||    
T  61089 aaggttgccaaaatcgggattttgcttcaggtcaaaagagaaaagtaaaatt-taaaatcgtaaaatcacaatcaaaatcgaagaattttacttaactac 61187  T
Q  345 ttttgtagaatcgatata 362  Q
    ||||||||||||||||||    
T  61188 ttttgtagaatcgatata 61205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 404
Target Start/End: Original strand, 38301 - 38459
Alignment:
Q  245 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgacta 343  Q
    |||||||||||||||||||| ||| |||||| ||||||||  |||| ||||| |  |  ||||||||| |||| | | || ||||||||| ||||    |    
T  38301 caaggttgtcaaaatcgggactttacttcaagtcgaaaggaaatagcaaaatcgggac-tcgtaaaattgcaatc-agatcgaaggattttactcatgga 38398  T
Q  344 cttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    |||||||||||||||| |||||||||||||||   | | ||||||||||||| ||||||||    
T  38399 cttttgtagaatcgatgtaggatagcaaaatcgctactcgtaaaatcgcaattaaaatcga 38459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1178 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 476 - 531
Target Start/End: Complemental strand, 424 - 369
Alignment:
Q  476 caaatattcttcaggagtcataataatgctaaacgacctagacaaaatacttaaag 531  Q
    |||||||||||  | ||||||||||||| ||||| |||||||||||||||||||||    
T  424 caaatattctttggtagtcataataatgttaaacaacctagacaaaatacttaaag 369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 354
Target Start/End: Complemental strand, 1026 - 916
Alignment:
Q  244 gcaaggttgtcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgact 342  Q
    |||||||| | |||||| |||||||||||||  || |||||| | || ||||||| ||||||||||||| |||| | |||| |||| | ||||||| |||    
T  1026 gcaaggtttttaaaatcaggattttgcttcaggtcaaaagggaagagcaaaattg-aaaatcgtaaaattgcaatcaaaatcgaagaattttactcaact 928  T
Q  343 acttttgtagaa 354  Q
    ||||||||||||    
T  927 acttttgtagaa 916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 402
Target Start/End: Original strand, 132947 - 133046
Alignment:
Q  304 tcgtaaaatcgcaaacgaaattgaaggatttac-tcgactacttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatc 402  Q
    |||||||||||||| | |||| ||||||||| | || |  ||||||||||||||||| |||||||||||| ||   | | ||||||||||||||||||||    
T  132947 tcgtaaaatcgcaatcaaaatcgaaggattttcctcaaggacttttgtagaatcgatgtaggatagcaaagtcgggactcgtaaaatcgcaatcaaaatc 133046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 8741 - 8850
Alignment:
Q  253 tcaaaatcgggattttgcttcaaatcgaaagggtatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgta 351  Q
    |||||||||||||||||||| |  | |||| |||| || ||||| ||||| || |||||||| || | |||| ||||||||| |||| ||||||||||||    
T  8741 tcaaaatcgggattttgctttaggttgaaaaggtagagcaaaatcgaaaa-tcataaaatcgtaatcaaaatcgaaggattttactcaactacttttgta 8839  T
Q  352 gaatcgatata 362  Q
    |||| ||||||    
T  8840 gaatagatata 8850  T

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Target: scaffold0684 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 409 - 530
Target Start/End: Original strand, 5196 - 5321
Alignment:
Q  409 tagtcataaatgactcaaagtttcaagtccgctaaatacttata--taaatgactcaaagtttaaatgcc---aaatattcttcaggagtcataataatg 503  Q
    ||||||||||||| ||||||||  |||||| | |||||| | ||  ||||||||||||||  || |||||   |||||||||| ||  ||||||||||||    
T  5196 tagtcataaatga-tcaaagttcaaagtccacaaaatacatgtacataaatgactcaaagcctatatgccgccaaatattctttagtggtcataataatg 5294  T
Q  504 ctaaacgacctagacaaaatacttaaa 530  Q
    ||| || ||||| ||||||||||||||    
T  5295 ctagacaacctaaacaaaatacttaaa 5321  T

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Target: scaffold0526 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 477 - 531
Target Start/End: Complemental strand, 8244 - 8187
Alignment:
Q  477 aaatattcttcaggagtcataataatgctaaa---cgacctagacaaaatacttaaag 531  Q
    |||||||||| || ||||||||||||| ||||   |||||||||||||||||||||||    
T  8244 aaatattctttagtagtcataataatggtaaataacgacctagacaaaatacttaaag 8187  T

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Target: scaffold0182 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 345 - 404
Target Start/End: Complemental strand, 24641 - 24582
Alignment:
Q  345 ttttgtagaatcgatataggatagcaaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    ||||||||||||||| |||||||||||| || | | |  |||||||||||||||||||||    
T  24641 ttttgtagaatcgatgtaggatagcaaagtcgagactcataaaatcgcaatcaaaatcga 24582  T

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Target: scaffold0259 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 472 - 530
Target Start/End: Complemental strand, 18485 - 18427
Alignment:
Q  472 atgccaaatattcttcaggagtcataataatgctaaacgacctagacaaaatacttaaa 530  Q
    |||||||||||||||||| | || | |||||| ||||| || |||||||||||||||||    
T  18485 atgccaaatattcttcagtaatcctgataatgttaaacaacatagacaaaatacttaaa 18427  T

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Target: scaffold0259; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 409
Target Start/End: Complemental strand, 18630 - 18588
Alignment:
Q  367 agcaaaatcaaaaattgtaaaatcgcaatcaaaatcgatggat 409  Q
    ||||||||||||||| ||||||| ||||||||||| |||||||    
T  18630 agcaaaatcaaaaatcgtaaaattgcaatcaaaatagatggat 18588  T

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Target: scaffold0150 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 381
Target Start/End: Complemental strand, 33239 - 33157
Alignment:
Q  300 aaaatcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatataggatagcaaaatcaaaaat 381  Q
    ||||| |||||||||||| | |||| |||| |||| ||||   ||||||||||||||||||||| |||||| ||||| |||||    
T  33239 aaaattgtaaaatcgcaatcaaaatcgaagaattttactcacttacttttgtagaatcgatataagatagcgaaatctaaaat 33157  T

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Target: scaffold0150; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 33246 - 33212
Alignment:
Q  370 aaaatcaaaaattgtaaaatcgcaatcaaaatcga 404  Q
    |||||| ||||||||||||||||||||||||||||    
T  33246 aaaatcgaaaattgtaaaatcgcaatcaaaatcga 33212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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