View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19122_high_11 (Length: 487)
Name: NF19122_high_11
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 39 - 474
Target Start/End: Complemental strand, 33016229 - 33015794
Alignment:
| Q |
39 |
caagatccaacagatctaacccttctgagatcttccaaggaagagaaggtgaattcatagaataccttgccaatagaagtgattccccgtttaccaagag |
138 |
Q |
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| T |
33016229 |
caagatccaacatatctaacccttctaagatcctccaaggaagagaaggtgaattcatagaataccttgccaatagaaatgattccccgtttaccaagag |
33016130 |
T |
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| Q |
139 |
atttccctaaaaccatcagcttggagcgcaagttatccatagtaaaaggtgatgacccttttggccatatcatcattacatgcaagttgtgtttacactc |
238 |
Q |
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| T |
33016129 |
atttccctataaccatcagcttggagcgcaagttatccatagtaaaaggtgatgacccttttggccatatcattattacatgcaagttgtgtttacactc |
33016030 |
T |
|
| Q |
239 |
atccaagccagtaatatactcctcttcaggaatatctgttgcgattcatcaccttttttgcatggttgaggtaactaactgattggaacatcacaaacat |
338 |
Q |
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| T |
33016029 |
atccaagccagtaatatactcctcttcaggaatttctgttgcgattcatcaccttttttgcatggatgaggtaactaactgattggaacatcacaaacat |
33015930 |
T |
|
| Q |
339 |
tgctaagagcttgtgcaaacgnnnnnnnnnnnnnnnnnggtcacggtgacagggctggggataacctttgtgttattgttggtggaaattggtggatcgg |
438 |
Q |
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| T |
33015929 |
tgctaagagcttgtgcaaacgtttttttgttgttttttggtcacggtgacagggctagggataacctttgtgttattgttggtggaaattggtggatcgg |
33015830 |
T |
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| Q |
439 |
tttgagaaacaagctggcatggccaatgtatgatga |
474 |
Q |
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| T |
33015829 |
tttgagaaacaagctggcatggccaatgtatgatga |
33015794 |
T |
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Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 141 - 329
Target Start/End: Complemental strand, 16179853 - 16179665
Alignment:
| Q |
141 |
ttccctaaaaccatcagcttggagcgcaagttatccatagtaaaaggtgatgacccttttggccatatcatcattacatgcaagttgtgtttacactcat |
240 |
Q |
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|||| ||| ||| ||| ||||| ||||| | |||| || |||| ||||| ||||||||| |||||||| || | ||||||| ||||| |||||||| | |
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| T |
16179853 |
ttccataagaccttcaacttggcgcgcatgctatctatggtaacaggtg-tgaccctttaggccatattattctcccatgcaaattgtggttacactctt |
16179755 |
T |
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| Q |
241 |
ccaagccagtaatatactcctcttcaggaatatctgttgcgatt-catcaccttttttgcatggttgaggtaactaactgattggaacat |
329 |
Q |
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| T |
16179754 |
ctaatccagcaatatactcatcttcaggaatttcaattgcaattccatctcctttcttgcatggctgaggtaattgactgattggaacat |
16179665 |
T |
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