View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19122_high_12 (Length: 462)

Name: NF19122_high_12
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19122_high_12
NF19122_high_12
[»] chr2 (6 HSPs)
chr2 (23-398)||(28528608-28528985)
chr2 (26-208)||(32468086-32468283)
chr2 (383-451)||(28529002-28529070)
chr2 (54-173)||(15340653-15340777)
chr2 (391-443)||(44718957-44719009)
chr2 (387-440)||(42530896-42530949)
[»] chr7 (4 HSPs)
chr7 (30-353)||(1086089-1086416)
chr7 (131-284)||(16319425-16319578)
chr7 (394-451)||(23756551-23756608)
chr7 (55-194)||(28243403-28243543)
[»] scaffold0064 (1 HSPs)
scaffold0064 (43-318)||(5182-5456)
[»] chr5 (7 HSPs)
chr5 (133-271)||(36443713-36443852)
chr5 (383-451)||(4930740-4930807)
chr5 (387-451)||(15727010-15727074)
chr5 (388-444)||(29368637-29368693)
chr5 (387-445)||(15810861-15810919)
chr5 (387-445)||(17228917-17228975)
chr5 (403-445)||(38351726-38351768)
[»] chr4 (6 HSPs)
chr4 (107-252)||(23149397-23149541)
chr4 (53-250)||(11413469-11413664)
chr4 (54-149)||(48881300-48881396)
chr4 (94-230)||(42460020-42460155)
chr4 (394-441)||(35747025-35747072)
chr4 (387-451)||(13035611-13035675)
[»] chr1 (3 HSPs)
chr1 (213-342)||(22509128-22509257)
chr1 (389-451)||(30294236-30294298)
chr1 (383-438)||(21487369-21487423)
[»] chr3 (10 HSPs)
chr3 (30-194)||(4524098-4524263)
chr3 (44-191)||(27994130-27994284)
chr3 (383-451)||(1902076-1902144)
chr3 (383-451)||(1911522-1911590)
chr3 (388-446)||(31339879-31339937)
chr3 (389-443)||(35864149-35864203)
chr3 (388-444)||(21984229-21984285)
chr3 (203-298)||(7958952-7959046)
chr3 (387-445)||(7729736-7729794)
chr3 (398-446)||(10480523-10480571)
[»] scaffold0481 (1 HSPs)
scaffold0481 (31-347)||(9182-9495)
[»] chr8 (4 HSPs)
chr8 (387-446)||(40381740-40381799)
chr8 (107-226)||(37340750-37340866)
chr8 (387-451)||(14539460-14539524)
chr8 (398-446)||(42163974-42164022)
[»] chr6 (7 HSPs)
chr6 (383-446)||(18250777-18250841)
chr6 (28-169)||(29606820-29606967)
chr6 (393-451)||(11769838-11769896)
chr6 (394-451)||(6822668-6822725)
chr6 (132-171)||(32685497-32685536)
chr6 (53-162)||(25063394-25063504)
chr6 (389-433)||(33106781-33106825)


Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 23 - 398
Target Start/End: Original strand, 28528608 - 28528985
Alignment:
Q  23 cacataggcttgcaagcagggggaatcaagactaaccttcactttgttgcttgattaaccttcaaatgcaatgattttgagcggaaaaactccaagtttg 122  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28528608 cacataggcttgcatgcagggggaatcaagactaacattcactttgttgcttgattaactttcaaatgcaatgattttgagcggaaaaactccaagtttg 28528707  T
Q  123 gacaaatttgtggttcagattttgggataagggaga--gagaaagtgaaaagttaaaatgtaaaactgtaaaattgggggaggggtgatttgttcttata 220  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28528708 gacaaatttgtggttcagattttgggataagggagagagagaaagtgaaaagttaaaatgtaaaactgtaaaattgggggaggggtgatttgttcttata 28528807  T
Q  221 tatatcgaagttgttcggattatataatccgaaccagttttcgtattatttcggattatataatatgaagggtattttgggaatatttgtagggcgcatg 320  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  28528808 tatatcgaagttgttccgattatataatccgaaccagttttcgtattatttcggattatataatatgaagggtattttgggaatatttgcagagcgcatg 28528907  T
Q  321 agtaccatatatggtgggaaaagtaattgtctaatgtaccaagaattgacattttgaccacatggtccacacatatca 398  Q
    || |||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||    
T  28528908 agaaccacatatggtaggaaaagtaattgtctaatgtaccaataattgacattttgatcacatggtccacacttatca 28528985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 26 - 208
Target Start/End: Original strand, 32468086 - 32468283
Alignment:
Q  26 ataggcttgcaagcagggggaatcaagactaaccttcactttgttgcttgattaaccttcaaatgcaatgattttgag---cggaaaaactccaagtttg 122  Q
    |||| |||||| |||| |||||||| || |||| |||||||||||||||||||||||||||||||| |||||||||||      ||||||||||||||||    
T  32468086 atagacttgcatgcagtgggaatcatgattaacattcactttgttgcttgattaaccttcaaatgcgatgattttgagtaaaaaaaaaactccaagtttg 32468185  T
Q  123 gacaaatt--tgtggttcagattttgggat----------aagggagagagaaagtgaaaagttaaaatgtaaaactgtaaaattgggggaggggtga 208  Q
    | ||||||  |||||||| |||||||||||           || |||||||| || || ||||||||||||||||||||||||| |||||||||||||    
T  32468186 gtcaaatttgtgtggttcggattttgggatgagagagagagagagagagagagagagagaagttaaaatgtaaaactgtaaaatggggggaggggtga 32468283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 383 - 451
Target Start/End: Original strand, 28529002 - 28529070
Alignment:
Q  383 tggtccacacatatcatcatatatctcaaattctttcttgacaatatgattattatcaagaatctgatg 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28529002 tggtccacacatatcatcatatatctcaaattctttcttgacaatatgattattatcaagaatcggatg 28529070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 15340777 - 15340653
Alignment:
Q  54 ctaaccttcactttgttgcttgattaaccttcaaatgcaatgattttgagcgga-aaaactccaagtttggacaaatttgtgg--ttcagattttgggat 150  Q
    |||| |||||||||||||  |||| ||||||||||||| ||||||||||||  | ||||||| ||| |||||| |||||||||  ||  |||||||||||    
T  15340777 ctaaacttcactttgttgtgtgatgaaccttcaaatgcgatgattttgagcaaagaaaactctaagattggaccaatttgtgggtttttgattttgggat 15340678  T
Q  151 aa--gggagagagaaagtgaaaagt 173  Q
    ||  |||||||||||||| ||||||    
T  15340677 aatggggagagagaaagtaaaaagt 15340653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 44719009 - 44718957
Alignment:
Q  391 acatatcatcatatatctcaaattctttcttgacaatatgattattatcaaga 443  Q
    ||||||||||| ||||||||||||||||||||| ||||||| | |||||||||    
T  44719009 acatatcatcaaatatctcaaattctttcttgataatatgaattttatcaaga 44718957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 440
Target Start/End: Original strand, 42530896 - 42530949
Alignment:
Q  387 ccacacatatcatcatatatctcaaattctttcttgacaatatgattattatca 440  Q
    |||||| |||||||||||||||||||  ||||||||| ||||||| ||||||||    
T  42530896 ccacacttatcatcatatatctcaaaaactttcttgataatatgaatattatca 42530949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 30 - 353
Target Start/End: Original strand, 1086089 - 1086416
Alignment:
Q  30 gcttgcaagcagggggaatcaagactaaccttcactttgttgcttgattaaccttcaaatgcaatgattttgagcggaaaaa-ctccaagtttggacaaa 128  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| | |||||||||||||||    
T  1086089 gcttgcatgcagggggaatcaggactaaccttcactttgttgcttgattaaccttcaaatgcgatgattttgtgcgaaaaaaacgccaagtttggacaaa 1086188  T
Q  129 tttgtg--gttcagattttgggataagggagagaga--aagtgaaaagttaaaatgtaaaactgtaaaattgggggaggggtgatttgttcttatatata 224  Q
    ||||||  |||| |||||||||||||||||||||||  ||||||||||| ||||||||||||||| |||| || |||| |||||||| ||||||||||||    
T  1086189 tttgtgtggttcggattttgggataagggagagagagaaagtgaaaagtgaaaatgtaaaactgtcaaatgggcggagtggtgattt-ttcttatatata 1086287  T
Q  225 tcgaagttgttcggattatataatccgaaccagttttcgtattatttcggattatataatatgaagggtattttgggaatatttgtagggcgcatgagta 324  Q
    |||||  |||||| ||||||||||||||||||||||| |||||||||| |||| |||||| ||||||| ||||| | ||| |||  | ||||||||||||    
T  1086288 tcgaacctgttcgaattatataatccgaaccagtttttgtattatttctgattttataatctgaagggcatttttgaaattttttcatggcgcatgagta 1086387  T
Q  325 ccatatatggtgggaaaagtaattgtcta 353  Q
    ||  ||| ||||| ||||||||| |||||    
T  1086388 cctcatagggtggaaaaagtaatagtcta 1086416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 131 - 284
Target Start/End: Original strand, 16319425 - 16319578
Alignment:
Q  131 tgtggttcagattttgggataaggg----agagagaaagtgaaaagttaaaatgtaaaactgtaaaattgggggaggggtgatttgttcttatatatatc 226  Q
    |||||||||||||| ||||||||||    |||||||||||||||||| ||||||||||||||||||||    |  ||||| |||| ||||||||||||||    
T  16319425 tgtggttcagatttcgggataagggggagagagagaaagtgaaaagtgaaaatgtaaaactgtaaaat---agatggggtaattt-ttcttatatatatc 16319520  T
Q  227 gaagttgttcggattatataatccgaaccagttttcgtattatttcggattatataat 284  Q
    |||   |||| ||||||||||||  |||| ||||||||||||||| ||||| ||||||    
T  16319521 gaaacggttcagattatataatcttaacccgttttcgtattattttggattgtataat 16319578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 23756551 - 23756608
Alignment:
Q  394 tatcatcatatatctcaaattctttcttgacaatatgattattatcaagaatctgatg 451  Q
    |||||||||||||||||||||||||||||| |||| || |||||||||||||| ||||    
T  23756551 tatcatcatatatctcaaattctttcttgataatacgaatattatcaagaatcagatg 23756608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 194
Target Start/End: Complemental strand, 28243543 - 28243403
Alignment:
Q  55 taaccttcactttgttgcttgattaaccttcaaatgcaatgattttgagcggaaaaactccaagtttggacaaatttgtgg--ttcagattttgggataa 152  Q
    ||||| ||| |||| || ||||| || ||||||||||  |||||||||||  ||||   |||| |||||||  |||||||   ||| |||||||||||||    
T  28243543 taaccatcaatttgatgtttgataaagcttcaaatgcggtgattttgagccaaaaa---ccaaatttggaccgatttgtgcacttcggattttgggataa 28243447  T
Q  153 gggagagaga--aagtgaaaagttaaaatgtaaaactgtaaaat 194  Q
    ||||||||||  |||| |||||| ||| ||| ||||||||||||    
T  28243446 gggagagagagaaagttaaaagtaaaactgtgaaactgtaaaat 28243403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 43 - 318
Target Start/End: Complemental strand, 5456 - 5182
Alignment:
Q  43 gggaatcaagactaaccttcactttgttgcttgattaaccttcaaatgcaatgattttgagcggaaaaactccaagtttggacaaatttgtggttcagat 142  Q
    |||||||| ||||||||||||||||| || ||| | || |||| ||||  ||||||||||||  |||||||| |||||||| ||||||||  ||||  ||    
T  5456 gggaatcaggactaaccttcactttggtgtttggtaaatcttcgaatgtgatgattttgagca-aaaaactctaagtttggtcaaatttg--gttcgaat 5360  T
Q  143 tttgggataagggagagaga----aagtgaaaagttaaaatgtaaaactgtaaaattgggggaggggtgatttgttcttatatatatcgaagttgttcgg 238  Q
    ||||||||||||||||||||    |||||||||||| |||||||||| | || ||| |||| ||||||||| | |||||||||| ||||||  |||||||    
T  5359 tttgggataagggagagagagagaaagtgaaaagtttaaatgtaaaattatagaatagggg-aggggtgatat-ttcttatatacatcgaaactgttcgg 5262  T
Q  239 attatataatccgaaccagttttcgtattatttcggattatataatatgaagggtattttgggaatatttgtagggcgca 318  Q
    |||||||||||||||||| ||||| |||||||| ||||| || |||   ||||||||||| ||| |||||||||||||||    
T  5261 attatataatccgaaccaattttcatattattttggattttaaaattcaaagggtattttaggactatttgtagggcgca 5182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 133 - 271
Target Start/End: Original strand, 36443713 - 36443852
Alignment:
Q  133 tggttcagattttgggataagggaga--gagaaagtgaaaagttaaaatgtaaaactgtaaaattgggggaggggtgatttgttcttatatatatcgaag 230  Q
    |||||| |||||||||||||||||||  |||||||||||||||| |||||||||||||||||||  ||||| || |||||| |||||||||||||| ||     
T  36443713 tggttcggattttgggataagggagagagagaaagtgaaaagtttaaatgtaaaactgtaaaatgcggggaaggatgattt-ttcttatatatatcaaaa 36443811  T
Q  231 ttgttcggattatataatccgaaccagttttcgtattattt 271  Q
       ||| |||||||||||| |||||||||||||||||||||    
T  36443812 cgattcagattatataatctgaaccagttttcgtattattt 36443852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 383 - 451
Target Start/End: Complemental strand, 4930807 - 4930740
Alignment:
Q  383 tggtccacacatatcatcatatatctcaaattctttcttgacaatatgattattatcaagaatctgatg 451  Q
    |||||||||||||||| ||| ||||||||||||||| |||| ||||||| |||||||||||||| ||||    
T  4930807 tggtccacacatatca-catgtatctcaaattcttttttgataatatgaatattatcaagaatcggatg 4930740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 387 - 451
Target Start/End: Complemental strand, 15727074 - 15727010
Alignment:
Q  387 ccacacatatcatcatatatctcaaattctttcttgacaatatgattattatcaagaatctgatg 451  Q
    ||||| |||| ||||||||||||||||| |||||||| | ||||| |||||||||||||||||||    
T  15727074 ccacatatataatcatatatctcaaattatttcttgatagtatgaatattatcaagaatctgatg 15727010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 29368693 - 29368637
Alignment:
Q  388 cacacatatcatcatatatctcaaattctttcttgacaatatgattattatcaagaa 444  Q
    |||| |||||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  29368693 cacatatatcatcatatatctcaaattctttattgataatatgaatattatcaagaa 29368637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 15810919 - 15810861
Alignment:
Q  387 ccacacatatcatcatatatctcaaattctttcttgacaatatgattattatcaagaat 445  Q
    ||||| |||||||||||||||||||||| ||| |||| | ||||| |||||||||||||    
T  15810919 ccacatatatcatcatatatctcaaattattttttgatagtatgaatattatcaagaat 15810861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 17228917 - 17228975
Alignment:
Q  387 ccacacatatcatcatatatctcaaattctttcttgacaatatgattattatcaagaat 445  Q
    ||||| ||||||||||||| |||||||||||| |||| ||||||| |||| ||||||||    
T  17228917 ccacatatatcatcatatagctcaaattcttttttgataatatgaatattgtcaagaat 17228975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 445
Target Start/End: Complemental strand, 38351768 - 38351726
Alignment:
Q  403 atatctcaaattctttcttgacaatatgattattatcaagaat 445  Q
    ||||||||||||||||||||| ||||||| |||||||||||||    
T  38351768 atatctcaaattctttcttgataatatgaatattatcaagaat 38351726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 107 - 252
Target Start/End: Original strand, 23149397 - 23149541
Alignment:
Q  107 aaaaactccaagtttggacaaatttgtgg--ttcagattttgggataagggagagagaaagtgaaaagtt-aaaatgtaaaactgtaaaattgggggagg 203  Q
    ||||||| |||||||||||| ||| |||   ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||   ||||||    
T  23149397 aaaaacttcaagtttggacagattcgtgcaattcagattttgggataagggagagagaaagtgaaaagttgaaactgtaaaactttaaaat---gggagg 23149493  T
Q  204 ggtgatttgttcttatatatatcgaagttgttcggattatataatccga 252  Q
    |||||||| |||||||||||||| |||  ||||||||||  ||||||||    
T  23149494 ggtgattt-ttcttatatatatcaaagcagttcggattacgtaatccga 23149541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 53 - 250
Target Start/End: Complemental strand, 11413664 - 11413469
Alignment:
Q  53 actaaccttcactttgttgcttgattaaccttcaaatgcaatgattttgagcggaaaaa--ctcc-aagtttggacaaattt--gtggttcagattttgg 147  Q
    |||||||||||||||| || ||| | || ||||||||||  |||||||||||  |||||  |||  ||||||||||| ||||  ||||||| ||||||||    
T  11413664 actaaccttcactttgatgtttgttaaagcttcaaatgcggtgattttgagcaaaaaaaaactcttaagtttggacagatttttgtggttcggattttgg 11413565  T
Q  148 gataagggagagagaaagtgaaaagttaaaa-tgtaaaactgtaaaattgggggaggggtgatttgttcttatatatatcgaagttgttcggattatata 246  Q
    |||    |||||||| |||||||| || ||| |||||||||||||||| ||   ||||||||||| | ||||||||||| ||||| ||||||||||||||    
T  11413564 gat----gagagagagagtgaaaatttgaaactgtaaaactgtaaaatagg---aggggtgattt-tccttatatatattgaagtagttcggattatata 11413473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 48881300 - 48881396
Alignment:
Q  54 ctaaccttcactttgttgcttgattaaccttcaaatgcaatgattttgagcggaaaaactccaagtttggacaaatttgtgg--ttcagattttggga 149  Q
    |||||||||||||||||||||||| ||||||||||||  ||||||||||||  ||||||| |||| |||||| |||||||||  ||||||||| ||||    
T  48881300 ctaaccttcactttgttgcttgatgaaccttcaaatgtgatgattttgagcataaaaact-caagattggaccaatttgtgggtttcagatttaggga 48881396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 230
Target Start/End: Original strand, 42460020 - 42460155
Alignment:
Q  94 tgattttgagcggaaaaactccaagtttggacaaatttgtgg--ttcagattttgggataagggagagagaaagtgaaaagtt-aaaatgtaaaactgta 190  Q
    |||||||||||  |||||||| |||||| |||| |||||||   |||| ||||||||| ||||| |||||||||||||||||| ||| ||||||||||||    
T  42460020 tgattttgagcaaaaaaactctaagttttgacagatttgtgcaattcaaattttgggaaaagggtgagagaaagtgaaaagttgaaactgtaaaactgta 42460119  T
Q  191 aaattgggggaggggtgatttgttcttatatatatcgaag 230  Q
     |||    ||||| ||||||| | ||||||||||||||||    
T  42460120 caat---aggaggagtgattt-tccttatatatatcgaag 42460155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 394 - 441
Target Start/End: Complemental strand, 35747072 - 35747025
Alignment:
Q  394 tatcatcatatatctcaaattctttcttgacaatatgattattatcaa 441  Q
    |||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  35747072 tatcatcatatatctcaaatcctttcttgataatatgaatattatcaa 35747025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 451
Target Start/End: Complemental strand, 13035675 - 13035611
Alignment:
Q  387 ccacacatatcatcatatatctcaaattctttcttgacaatatgattattatcaagaatctgatg 451  Q
    |||||| ||| ||||||||| | |||| ||||||||| ||||||| |||||||||||||| ||||    
T  13035675 ccacacctataatcatatatatgaaatcctttcttgataatatgaatattatcaagaatcggatg 13035611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 213 - 342
Target Start/End: Original strand, 22509128 - 22509257
Alignment:
Q  213 ttcttatatatatcgaagttgttcggattatataatccgaaccagttttcgtattatttcggattatataatatgaagggtattttgggaatatttgtag 312  Q
    |||||||||||||||||    ||  |||||||||||||||||||||||||||||||||||||| | || ||| |||||||||||||||||||||||| ||    
T  22509128 ttcttatatatatcgaaacaatttagattatataatccgaaccagttttcgtattatttcggaatttaaaatctgaagggtattttgggaatatttgcag 22509227  T
Q  313 ggcgcatgagtaccatatatggtgggaaaa 342  Q
    ||||  |||| |||| ||| | ||||||||    
T  22509228 ggcgtttgagaaccacataggatgggaaaa 22509257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 389 - 451
Target Start/End: Complemental strand, 30294298 - 30294236
Alignment:
Q  389 acacatatcatcatatatctcaaattctttcttgacaatatgattattatcaagaatctgatg 451  Q
    |||||||||||||||||||| |||||||||||||| | ||||| |||||||||||||||||||    
T  30294298 acacatatcatcatatatcttaaattctttcttgatagtatgaatattatcaagaatctgatg 30294236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 383 - 438
Target Start/End: Original strand, 21487369 - 21487423
Alignment:
Q  383 tggtccacacatatcatcatatatctcaaattctttcttgacaatatgattattat 438  Q
    ||||||||||||||||||| |||||||||||||||| |||| ||||||| ||||||    
T  21487369 tggtccacacatatcatca-atatctcaaattcttttttgataatatgaatattat 21487423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 4524098 - 4524263
Alignment:
Q  30 gcttgcaagcagggggaatcaagactaaccttcactttgttgcttgattaaccttcaaatgcaatgattttgagcggaaaaactccaagtttggacaaat 129  Q
    ||||||| |||| |||||||| |||||||||||||||| ||| |||||||||||||||||   ||||||||||||  ||| | || ||| |||||| |||    
T  4524098 gcttgcatgcagagggaatcaggactaaccttcactttattgtttgattaaccttcaaatatgatgattttgagcaaaaacattctaagattggaccaat 4524197  T
Q  130 t--tgtggttcagattttgggataagggagagagaaagtgaaaagttaaaatgtaaaactgtaaaat 194  Q
    |  |||||||  ||||||  ||||||||||||||||||| ||||| ||||| ||||||| |||||||    
T  4524198 ttgtgtggtttggattttaagataagggagagagaaagtaaaaag-taaaaagtaaaaccgtaaaat 4524263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 44 - 191
Target Start/End: Original strand, 27994130 - 27994284
Alignment:
Q  44 ggaatcaagactaaccttcactttgttgcttgattaaccttcaaatgcaatgattttgagcggaaaaa----ctccaagtttggacaaatttgtg--gtt 137  Q
    |||||||| |||||||||||||||| || ||| | || |||| ||||  ||||||||||||  |||||    |  ||| ||||||||||||||||  |||    
T  27994130 ggaatcaatactaaccttcactttgatgtttgttaaatcttcgaatgtgatgattttgagcaaaaaaaaaaacaacaactttggacaaatttgtgtggtt 27994229  T
Q  138 cagattttgggataagggagagagaaagtgaaaa-gttaaaatgtaaaactgtaa 191  Q
      |||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  27994230 tggattttgggataagggagagagaaagtgaaaatgtgaaaatgtaaaactgtaa 27994284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 383 - 451
Target Start/End: Original strand, 1902076 - 1902144
Alignment:
Q  383 tggtccacacatatcatcatatatctcaaattctttcttgacaatatgattattatcaagaatctgatg 451  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| ||||    
T  1902076 tggtctacacatatcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatg 1902144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 383 - 451
Target Start/End: Original strand, 1911522 - 1911590
Alignment:
Q  383 tggtccacacatatcatcatatatctcaaattctttcttgacaatatgattattatcaagaatctgatg 451  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| ||||    
T  1911522 tggtctacacatatcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatg 1911590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 388 - 446
Target Start/End: Original strand, 31339879 - 31339937
Alignment:
Q  388 cacacatatcatcatatatctcaaattctttcttgacaatatgattattatcaagaatc 446  Q
    ||||||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||    
T  31339879 cacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatc 31339937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 35864149 - 35864203
Alignment:
Q  389 acacatatcatcatatatctcaaattctttcttgacaatatgattattatcaaga 443  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | |||||||||    
T  35864149 acacatatcatcatatatctcaaattctttcttgataatatgaattttatcaaga 35864203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 21984229 - 21984285
Alignment:
Q  388 cacacatatcatcatatatctcaaattctttcttgacaatatgattattatcaagaa 444  Q
    |||| |||||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  21984229 cacatatatcatcatatatctcaaattctttattgataatatgaatattatcaagaa 21984285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 298
Target Start/End: Complemental strand, 7959046 - 7958952
Alignment:
Q  203 gggtgatttgttcttatatatatcgaagttgttcggattatataatccgaaccagttttcgtattatttcggattatataatatgaagggtatttt 298  Q
    ||||||||| |||||||||||||||||  |||  ||||| |||||||||||| || |||||||||||||| ||||  |||||  |||||| |||||    
T  7959046 gggtgattt-ttcttatatatatcgaaaatgtcaggattttataatccgaactagctttcgtattatttcagatttcataatccgaagggcatttt 7958952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 7729736 - 7729794
Alignment:
Q  387 ccacacatatcatcatatatctcaaattctttcttgacaatatgattattatcaagaat 445  Q
    |||||| |||||||||||| ||||| |  |||||||| ||||||| |||||||||||||    
T  7729736 ccacacctatcatcatatagctcaattcatttcttgataatatgaatattatcaagaat 7729794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 446
Target Start/End: Complemental strand, 10480571 - 10480523
Alignment:
Q  398 atcatatatctcaaattctttcttgacaatatgattattatcaagaatc 446  Q
    ||||||||| |||||| ||||||||| ||||||  ||||||||||||||    
T  10480571 atcatatatttcaaatcctttcttgataatatgcatattatcaagaatc 10480523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 31 - 347
Target Start/End: Complemental strand, 9495 - 9182
Alignment:
Q  31 cttgcaagcagggggaatcaagactaaccttcactttgttgcttgattaaccttcaaatgcaatgattttgagcggaaaa--actccaagtttggacaaa 128  Q
    |||||| ||||  ||||||  ||||||| ||||||||  || ||| | || |||| ||||  ||||||||||||  ||||  ||||||| ||| || |||    
T  9495 cttgcatgcagatggaatctggactaacattcactttagtgtttggtaaagcttcgaatgtgatgattttgagcaaaaaataactccaacttttgataaa 9396  T
Q  129 tttgtg--gttcagattttgggataagggagagagaaagtgaaaagttaaaatgtaaaactgtaaaattgggggaggggtgatttgttcttatatatatc 226  Q
    ||| ||  |||| ||||||||||||||||||||| | |     |||| |||||||||||||| ||||| | |||||||||| ||| ||||||||||||||    
T  9395 tttatgttgttcggattttgggataagggagagataga-----aagtgaaaatgtaaaactgaaaaatggtgggaggggtgtttt-ttcttatatatatc 9302  T
Q  227 gaagttgttcggattatataatccgaaccagttttcgtattatttcggattatataatatgaagggtattttgggaatatttgtagggcgcatgagtacc 326  Q
     ||   |||| ||||||||||||| | |||||||||||||||||| ||||  || |||  |||||||| |||||||| ||||| | || | || || |||    
T  9301 aaaacggttcagattatataatccaatccagttttcgtattattttggatattaaaatccgaagggtaatttgggaaaatttgcaaggtgtat-agaacc 9203  T
Q  327 atatatggtgggaaaagtaat 347  Q
    ||||| || ||||||||||||    
T  9202 atatagggcgggaaaagtaat 9182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 40381799 - 40381740
Alignment:
Q  387 ccacacatatcatcatatatctcaaattctttcttgacaatatgattattatcaagaatc 446  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||| ||||||||||||||    
T  40381799 ccacacatatcatcatatatctcaaattattttttgataatatgaatattatcaagaatc 40381740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 226
Target Start/End: Complemental strand, 37340866 - 37340750
Alignment:
Q  107 aaaaactccaagtttggacaaatttgtg--gttcagattttgggataagggagagagaaagtgaaaagttaaaa-tgtaaaactgtaaaattgggggagg 203  Q
    |||||| |||| |||||||| |||||||  |||   ||||||||||||||||||||  |||||||||||||||| ||||||||||||||||   ||||||    
T  37340866 aaaaacaccaaatttggacatatttgtgtggtttgaattttgggataagggagaga--aagtgaaaagttaaaactgtaaaactgtaaaat---gggagg 37340772  T
Q  204 ggtgatttgttcttatatatatc 226  Q
    |||||||| | ||||||||||||    
T  37340771 ggtgattt-tccttatatatatc 37340750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 451
Target Start/End: Original strand, 14539460 - 14539524
Alignment:
Q  387 ccacacatatcatcatatatctcaaattctttcttgacaatatgattattatcaagaatctgatg 451  Q
    |||||| ||| |||||||||||||||| ||||||||| | ||||| ||||||||| |||| ||||    
T  14539460 ccacacctataatcatatatctcaaatcctttcttgatagtatgaatattatcaaaaatcagatg 14539524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 446
Target Start/End: Original strand, 42163974 - 42164022
Alignment:
Q  398 atcatatatctcaaattctttcttgacaatatgattattatcaagaatc 446  Q
    |||||||||||| |||| |||||||| ||||||| ||||||||||||||    
T  42163974 atcatatatctctaattatttcttgataatatgaatattatcaagaatc 42164022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 18250777 - 18250841
Alignment:
Q  383 tggtccacacat-atcatcatatatctcaaattctttcttgacaatatgattattatcaagaatc 446  Q
    |||||||||||| ||| |||||||| |||||||||||||||| ||||||| ||||||||||||||    
T  18250777 tggtccacacattatcgtcatatatttcaaattctttcttgataatatgaatattatcaagaatc 18250841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 169
Target Start/End: Original strand, 29606820 - 29606967
Alignment:
Q  28 aggcttgcaagcagggggaatcaagac-taaccttcactttgttgcttgattaaccttcaaatgcaatgattttgagc--ggaaaaactccaagtttgga 124  Q
    ||||||||| |||| |||||| ||||| |||||||||||||| || ||||| || |||||||||| | ||||||||||    |||||||||||| || ||    
T  29606820 aggcttgcatgcagagggaat-aagacctaaccttcactttggtgtttgataaagcttcaaatgcgacgattttgagcaaaaaaaaactccaagatttga 29606918  T
Q  125 caaatttgt--ggttcagattttgggataagg--gagagagaaagtgaa 169  Q
    | |||||||  | ||| |||||||| ||||||  |||||||||||||||    
T  29606919 ccaatttgttggtttcggattttggaataaggaagagagagaaagtgaa 29606967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 11769838 - 11769896
Alignment:
Q  393 atatcatcatatatctcaaattctttcttgacaatatgattattatcaagaatctgatg 451  Q
    |||||||||||||||||||||| |||||||| ||||| | ||| |||||||||| ||||    
T  11769838 atatcatcatatatctcaaattttttcttgataatataaatataatcaagaatcggatg 11769896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 6822725 - 6822668
Alignment:
Q  394 tatcatcatatatctcaaattctttcttgacaatatgattattatcaagaatctgatg 451  Q
    |||||||||||||||||||||  ||| ||| ||||||| |||||||||||||| ||||    
T  6822725 tatcatcatatatctcaaatttattcatgataatatgaatattatcaagaatcggatg 6822668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 32685497 - 32685536
Alignment:
Q  132 gtggttcagattttgggataagggagagagaaagtgaaaa 171  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  32685497 gtggttcggattttgggataagggagaaagaaagtgaaaa 32685536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 162
Target Start/End: Original strand, 25063394 - 25063504
Alignment:
Q  53 actaaccttcactttgttgcttgattaaccttcaaatgcaatgattttgagcggaaaaactccaagtttggacaaatttgtg--gttcagattttgggat 150  Q
    ||||||||||| |||| || ||||| |  ||| |||||| ||||||||||||  ||||||||||| |||||||  |||||||   ||| || |||||||     
T  25063394 actaaccttcaatttgatgtttgataaggcttgaaatgcgatgattttgagc-aaaaaactccaattttggaccgatttgtgcaattcggaatttgggac 25063492  T
Q  151 aagggagagaga 162  Q
    ||||||||||||    
T  25063493 aagggagagaga 25063504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 433
Target Start/End: Original strand, 33106781 - 33106825
Alignment:
Q  389 acacatatcatcatatatctcaaattctttcttgacaatatgatt 433  Q
    ||||||||  |||||||| |||||||||||||||| |||||||||    
T  33106781 acacatatagtcatatatatcaaattctttcttgataatatgatt 33106825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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