View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19122_high_23 (Length: 341)
Name: NF19122_high_23
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 44 - 323
Target Start/End: Original strand, 5230583 - 5230862
Alignment:
| Q |
44 |
aaactaatattaatttattcttactttcatctttctctgtttgatatatatttactgaactatgttgtagattgacacttgcaatggatattactgtgaa |
143 |
Q |
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| T |
5230583 |
aaactaatattaatttattcttactttcatctttctctgtttgatatatatttactgaactatgttgtagattgacacttgcaatggatattactgtgaa |
5230682 |
T |
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| Q |
144 |
aatttcactcccaacgagaactttaaacccaaaatgtggactgagaattggtctggctggtaattcatgctcattcaaatgctaccattaatttaaagct |
243 |
Q |
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| T |
5230683 |
aatttcactcccaacgagaactttaaacccaaaatgtggactgagaattggtctggctggtaagtcatgctcattcaaatgctaccattaatttaaagct |
5230782 |
T |
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| Q |
244 |
ataaatatttcatttgggatcatatgtttaatttttatcttacctattctataggtacactgatttcggtggtgctatat |
323 |
Q |
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| T |
5230783 |
ataaatatttcatttgggatcatatgtttaatttttatgttacctattctgtaggtacactgatttcggtggtgctatat |
5230862 |
T |
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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 109 - 205
Target Start/End: Original strand, 17126237 - 17126333
Alignment:
| Q |
109 |
tgtagattgacacttgcaatggatattactgtgaaaatttcactcccaacgagaactttaaacccaaaatgtggactgagaattggtctggctggta |
205 |
Q |
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| T |
17126237 |
tgtagattgatacctgtaatggatattactgtgaaaacttctctcccaacaagaactacaaaccaaaaatgtggacagaaaattggactggctggta |
17126333 |
T |
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