View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19122_high_24 (Length: 319)

Name: NF19122_high_24
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19122_high_24
NF19122_high_24
[»] chr4 (7 HSPs)
chr4 (34-307)||(47514276-47514548)
chr4 (31-129)||(29779121-29779219)
chr4 (33-130)||(17898197-17898294)
chr4 (31-152)||(11302293-11302413)
chr4 (38-130)||(38716787-38716879)
chr4 (74-130)||(2256501-2256557)
chr4 (39-79)||(24364256-24364296)
[»] chr1 (5 HSPs)
chr1 (31-154)||(30220277-30220400)
chr1 (44-152)||(47978495-47978602)
chr1 (62-130)||(35198915-35198983)
chr1 (34-105)||(47836665-47836736)
chr1 (55-104)||(35215431-35215480)
[»] chr7 (8 HSPs)
chr7 (18-150)||(26984534-26984666)
chr7 (62-154)||(38453263-38453355)
chr7 (31-107)||(45369104-45369181)
chr7 (44-91)||(7168863-7168910)
chr7 (31-69)||(35105138-35105176)
chr7 (38-120)||(35812246-35812328)
chr7 (34-80)||(42481986-42482032)
chr7 (38-75)||(33076609-33076646)
[»] chr3 (6 HSPs)
chr3 (30-154)||(49829122-49829246)
chr3 (30-154)||(32111889-32112013)
chr3 (31-91)||(41115429-41115489)
chr3 (60-152)||(46870315-46870407)
chr3 (62-130)||(25129619-25129687)
chr3 (44-84)||(835858-835898)
[»] chr2 (7 HSPs)
chr2 (34-128)||(42650192-42650286)
chr2 (35-154)||(3551527-3551645)
chr2 (30-154)||(36306863-36306984)
chr2 (44-122)||(43987860-43987938)
chr2 (38-154)||(4007276-4007390)
chr2 (48-98)||(20663222-20663272)
chr2 (73-126)||(32631148-32631201)
[»] chr8 (6 HSPs)
chr8 (30-152)||(38516146-38516269)
chr8 (44-129)||(24774826-24774911)
chr8 (31-127)||(24183670-24183766)
chr8 (30-79)||(42624951-42625000)
chr8 (44-127)||(24098199-24098282)
chr8 (33-82)||(11574313-11574362)
[»] chr5 (8 HSPs)
chr5 (30-121)||(5465535-5465626)
chr5 (31-107)||(1879099-1879175)
chr5 (30-90)||(32421998-32422058)
chr5 (46-102)||(34449489-34449545)
chr5 (28-91)||(6095395-6095458)
chr5 (31-74)||(29922031-29922074)
chr5 (62-107)||(23647584-23647629)
chr5 (62-107)||(23810944-23810989)
[»] chr6 (3 HSPs)
chr6 (31-130)||(24803924-24804026)
chr6 (44-129)||(1872304-1872389)
chr6 (31-104)||(578875-578948)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 34 - 307
Target Start/End: Original strand, 47514276 - 47514548
Alignment:
Q  34 cttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttgactat 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  47514276 cttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatataatcacttttgactct 47514375  T
Q  134 ctagaattgaaatcaaacacacgttaaacttcaaattgggtaaaacaatatacaaggtaattcttctatgatcatgagctaatgttgtcatagtttatgt 233  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47514376 ctagaattgaaatcaaacacacgttaaattttaaattgggtaaaacaatatacaaggtaattcttctatgatcatgagctaatgttgtcatagtttatgt 47514475  T
Q  234 gaaattttgtgttggggggaatgttgcaataacttggataataaaatgaagatgaagaacacatgatgataatg 307  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47514476 gaaattttgtgtt-gggggaatgttgcaataacttggataataaaatgaagatgaagaacacatgatgataatg 47514548  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 29779121 - 29779219
Alignment:
Q  31 tagcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttga 129  Q
    |||||||||||| ||||||||||||||| ||||||||||||  ||||||||||| |||||| ||||||||||||||| || || |||||||||||||||    
T  29779121 tagcttcaagtagaatcaattctacaagcaaaatcaattctcttttaaatcatccaaacatgataaaatcaattctacaatctctagaatcacttttga 29779219  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 17898197 - 17898294
Alignment:
Q  33 gcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttgac 130  Q
    |||||||||| ||||||||||||||| |||||||||| ||||||||| |||| |||||| ||| ||||||||||| ||||| |||||||| |||||||    
T  17898197 gcttcaagtagaatcaattctacaagcaaaatcaattatactttaaaccatccaaacatgatacaatcaattctacaacctctagaatcaattttgac 17898294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 11302413 - 11302293
Alignment:
Q  31 tagcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttgac 130  Q
    |||||||||||| ||||||||| ||||| |||| ||| ||| | |||||||||| |||||| || |||||||||||| ||| | |||||||| |||||||    
T  11302413 tagcttcaagtagaatcaattccacaagcaaaaccaaatcttcattaaatcatccaaacatgat-aaatcaattctacaacttctagaatcaattttgac 11302315  T
Q  131 tatctagaattgaaatcaaaca 152  Q
    | || | |||||||| ||||||    
T  11302314 tctccaaaattgaaaccaaaca 11302293  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 38716879 - 38716787
Alignment:
Q  38 aagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttgac 130  Q
    ||||| |||||||| | |||| ||||| |||||| |||||||||||  |||| | |||||||||||| || || || ||||||||||||||||    
T  38716879 aagtagaatcaattatgcaagcaaaataaattctgctttaaatcattcaaacttgataaaatcaattttacaatctctagaatcacttttgac 38716787  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 2256501 - 2256557
Alignment:
Q  74 tttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttgac 130  Q
    |||||||||| ||||||| ||||||||||||||| ||||| || |||| ||||||||    
T  2256501 tttaaatcatttaaacatgataaaatcaattctacaacctttaaaatcgcttttgac 2256557  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 24364256 - 24364296
Alignment:
Q  39 agtaaaatcaattctacaagaaaaatcaattctactttaaa 79  Q
    |||| ||||||||||||||  ||||||||||||||||||||    
T  24364256 agtagaatcaattctacaaacaaaatcaattctactttaaa 24364296  T

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Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 30220277 - 30220400
Alignment:
Q  31 tagcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttgac 130  Q
    |||||||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||| |||||||| || ||||| ||||||||||||||||    
T  30220277 tagcttcaagtagaatcaattatacaagcaaaatcaattctactttaaatcatccaaacatcatataatcaattatacaacctctagaatcacttttgac 30220376  T
Q  131 tatctagaattgaaatcaaacaca 154  Q
    | |||| |||||||||||||||||    
T  30220377 tctctaaaattgaaatcaaacaca 30220400  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 47978495 - 47978602
Alignment:
Q  44 aatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttgactatctagaattga 143  Q
    ||||||||||||||| |||||||||||| |||||||| ||| |||| | ||||||| || |||| ||| | ||||||||||||||||  || | ||||||    
T  47978495 aatcaattctacaaggaaaatcaattctcctttaaataatccaaacttgataaaat-aactctacaacttctagaatcacttttgaccctccaaaattga 47978593  T
Q  144 aatcaaaca 152  Q
    || ||||||    
T  47978594 aaacaaaca 47978602  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 35198983 - 35198915
Alignment:
Q  62 aatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttgac 130  Q
    |||||||||| ||| |||||||  |||||| ||||||||||||||  |||||||||||||| |||||||    
T  35198983 aatcaattctccttcaaatcattcaaacatgataaaatcaattcttcaacctatagaatcaattttgac 35198915  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 47836736 - 47836665
Alignment:
Q  34 cttcaagtaaaa-tcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattc 105  Q
    |||||||||||| | ||||||||||| |||||||||| | |||| ||||||| |||||| |||||||||||||    
T  47836736 cttcaagtaaaaataaattctacaagcaaaatcaattttccttttaatcatc-aaacatgataaaatcaattc 47836665  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 35215480 - 35215431
Alignment:
Q  55 caagaaaaatcaattctactttaaatcatctaaacatcataaaatcaatt 104  Q
    |||| |||||||||||  |||||||||||| |||||| ||||||||||||    
T  35215480 caagcaaaatcaattcacctttaaatcatcaaaacatgataaaatcaatt 35215431  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 26984534 - 26984666
Alignment:
Q  18 aagcttcaattcgtagcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatag 117  Q
    ||||| ||| || |||||||||||| ||||||||||||||  |||||||| |||||||||||||||  |||||||||||||||||||||| ||||| |||    
T  26984534 aagctacaaatcttagcttcaagtagaatcaattctacaaacaaaatcaagtctactttaaatcattcaaacatcataaaatcaattctacaacctctag 26984633  T
Q  118 aatcacttttgactatctagaattgaaatcaaa 150  Q
    ||||||||||||| |||| || |||||| ||||    
T  26984634 aatcacttttgaccatcttgatttgaaaccaaa 26984666  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 38453355 - 38453263
Alignment:
Q  62 aatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttgactatctagaattgaaatcaaacaca 154  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||| ||||| |||||| ||||||||   ||||||||||||| ||| ||||    
T  38453355 aatcaattctactttaaatcatccaaatatcataaaatcaattctacaacctctagaattacttttgatcctctagaattgaaaccaagcaca 38453263  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 45369181 - 45369104
Alignment:
Q  31 tagcttcaagt-aaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattcta 107  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||| | | |||| |||||||  |||||||| ||||    
T  45369181 tagcttcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacatccaaacatctcaaaatcaaatcta 45369104  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 7168910 - 7168863
Alignment:
Q  44 aatcaattctacaagaaaaatcaattctactttaaatcatctaaacat 91  Q
    |||||||||||| || ||||||||||||| ||||||||||| ||||||    
T  7168910 aatcaattctactagcaaaatcaattctaatttaaatcatccaaacat 7168863  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 35105176 - 35105138
Alignment:
Q  31 tagcttcaagtaaaatcaattctacaagaaaaatcaatt 69  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  35105176 tagcttcaagtagaatcaattctacaagcaaaatcaatt 35105138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 35812328 - 35812246
Alignment:
Q  38 aagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaat 120  Q
    ||||| ||| ||||||||||| | ||||| |||| |||||||||||| ||| || || |||| ||||||| ||||| ||||||    
T  35812328 aagtataataaattctacaagcataatcagttcttctttaaatcatccaaatatgatgaaattaattctataacctctagaat 35812246  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 42481986 - 42482032
Alignment:
Q  34 cttcaagtaaaatcaattctacaagaaaaatcaattctactttaaat 80  Q
    ||||||| |||||||||| |||||| |||||||||||| ||||||||    
T  42481986 cttcaagcaaaatcaattttacaagcaaaatcaattctcctttaaat 42482032  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 33076609 - 33076646
Alignment:
Q  38 aagtaaaatcaattctacaagaaaaatcaattctactt 75  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  33076609 aagtagaatcaattctacaagcaaaatcaattctactt 33076646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 49829122 - 49829246
Alignment:
Q  30 gtagcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttga 129  Q
    ||||||||||||| |||||||| |||||| |||||  |||||||||||||||||| |||||||||| ||||||||  | ||||| |||||||||||||||    
T  49829122 gtagcttcaagtagaatcaattgtacaagcaaaattgattctactttaaatcatccaaacatcatataatcaattaaacaacctctagaatcacttttga 49829221  T
Q  130 ctatctagaattgaaatcaaacaca 154  Q
    |  ||||||||||||| ||||||||    
T  49829222 ccctctagaattgaaaccaaacaca 49829246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 32112013 - 32111889
Alignment:
Q  30 gtagcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttga 129  Q
    ||||||||||||| |||||||||||||   |||||||||| |||||||||||||| || || ||||||||||||| || |||||  ||||||||||||||    
T  32112013 gtagcttcaagtagaatcaattctacatacaaaatcaattttactttaaatcatccaaccaacataaaatcaattttagaacctcaagaatcacttttga 32111914  T
Q  130 ctatctagaattgaaatcaaacaca 154  Q
       ||||||||||||| ||||||||    
T  32111913 tcctctagaattgaaaccaaacaca 32111889  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 41115429 - 41115489
Alignment:
Q  31 tagcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacat 91  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||| |||| ||||||    
T  41115429 tagcttcaagtagaatcaattctacaagcaaaatcaattctactttaaaacatccaaacat 41115489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 152
Target Start/End: Complemental strand, 46870407 - 46870315
Alignment:
Q  60 aaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttgactatctagaattgaaatcaaaca 152  Q
    |||||||||| | |||||||||||| |||||| ||||||||||||||| ||| | || |||||||||||||  || | |||||||||||||||    
T  46870407 aaaatcaattatcctttaaatcatccaaacatgataaaatcaattctacaacatctataatcacttttgaccctccaaaattgaaatcaaaca 46870315  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 25129619 - 25129687
Alignment:
Q  62 aatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttgac 130  Q
    |||||||||  |||||||||||| |||||| ||||||||||||||| ||||| |||||||| |||||||    
T  25129619 aatcaattcacctttaaatcatccaaacatgataaaatcaattctacaacctctagaatcaattttgac 25129687  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 835898 - 835858
Alignment:
Q  44 aatcaattctacaagaaaaatcaattctactttaaatcatc 84  Q
    ||||||||||||||  |||||||||||| ||||||||||||    
T  835898 aatcaattctacaacgaaaatcaattctcctttaaatcatc 835858  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 42650286 - 42650192
Alignment:
Q  34 cttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttg 128  Q
    ||||||||| ||||||| ||||||   ||||||||| |||||||||||||| |||||||||||||||||||||| || || ||||||||||||||    
T  42650286 cttcaagtagaatcaatcctacaaacgaaatcaattatactttaaatcatccaaacatcataaaatcaattctacaatctctagaatcacttttg 42650192  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 3551645 - 3551527
Alignment:
Q  35 ttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttgactatc 134  Q
    |||||||| ||| ||||||||||| ||| |||| |||||||||||||||| ||||||||||||||||||| || ||| | |||||||||||| ||   ||    
T  3551645 ttcaagtagaataaattctacaagtaaa-tcaaatctactttaaatcatccaaacatcataaaatcaattttataacttctagaatcactttagatcctc 3551547  T
Q  135 tagaattgaaatcaaacaca 154  Q
    || |||||||| ||||||||    
T  3551546 taaaattgaaaccaaacaca 3551527  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 36306984 - 36306863
Alignment:
Q  30 gtagcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttga 129  Q
    |||||| |||||| |||||||| |||||  |||||||||||||   ||||||||| ||||||| |||||||||||| | || || ||||||||||||| |    
T  36306984 gtagctccaagtagaatcaattgtacaatcaaaatcaattcta---taaatcatccaaacatcgtaaaatcaattccacaatctctagaatcacttttaa 36306888  T
Q  130 ctatctagaattgaaatcaaacaca 154  Q
    |  ||||||||||||| ||||||||    
T  36306887 ccctctagaattgaaaccaaacaca 36306863  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 43987938 - 43987860
Alignment:
Q  44 aatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatca 122  Q
    |||||||||| |||  |||||||||| |  ||||||||||| |||||| ||||||||||||||| ||| | ||||||||    
T  43987938 aatcaattctgcaaagaaaatcaattatcttttaaatcatccaaacatgataaaatcaattctacaacttctagaatca 43987860  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 4007276 - 4007390
Alignment:
Q  38 aagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttgactatctag 137  Q
    ||||| |||||||||||   | ||||| |||||||||||||||| |  ||||| ||| |||||||||||| ||| | |||||||| ||||| || |||||    
T  4007276 aagtagaatcaattctaagggcaaaatgaattctactttaaatctttcaaacaacat-aaatcaattctacaacatctagaatcatttttg-ctctctag 4007373  T
Q  138 aattgaaatcaaacaca 154  Q
    ||| |||| ||||||||    
T  4007374 aatcgaaaccaaacaca 4007390  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 20663222 - 20663272
Alignment:
Q  48 aattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaa 98  Q
    ||||||||||||||| |||||||| |||||||||||| ||| || ||||||    
T  20663222 aattctacaagaaaactcaattctcctttaaatcatcaaaatattataaaa 20663272  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 32631148 - 32631201
Alignment:
Q  73 ctttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttt 126  Q
    |||||||||||||||||||  |||||||||||||| || ||  |||||||||||    
T  32631148 ctttaaatcatctaaacatggtaaaatcaattctacaatctcaagaatcacttt 32631201  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 38516269 - 38516146
Alignment:
Q  30 gtagcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatca-cttttg 128  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||||| ||||| || |||| ||||||||||| || | ||| || ||||| |||||     
T  38516269 gtagcttcaagtagaatcaattctacaaacaaaatcaattctactttaagtcatccaaccatcttaaaatcaattttacatcctctataatcacctttta 38516170  T
Q  129 actatctagaattgaaatcaaaca 152  Q
     || | ||||||||||| ||||||    
T  38516169 cctttttagaattgaaaccaaaca 38516146  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 24774911 - 24774826
Alignment:
Q  44 aatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttga 129  Q
    ||||||||||||||| ||| ||||||||  ||||||||||| ||||||  ||||||||||| || || || |||||||| ||||||    
T  24774911 aatcaattctacaagtaaactcaattctcatttaaatcatccaaacatgctaaaatcaattatagaatctctagaatcaattttga 24774826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 24183766 - 24183670
Alignment:
Q  31 tagcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcactttt 127  Q
    |||||||||||| |||||| || ||||  |||||||| || |||  |||||||||||||||||||| || ||||||| || || || ||||||||||    
T  24183766 tagcttcaagtagaatcaaatcaacaatcaaaatcaaatccactacaaatcatctaaacatcataacataaattctacaatctctaaaatcactttt 24183670  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 42624951 - 42625000
Alignment:
Q  30 gtagcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaa 79  Q
    |||||||||| || ||||||||||||||  ||||||||||||||||||||    
T  42624951 gtagcttcaaatagaatcaattctacaaataaaatcaattctactttaaa 42625000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 24098199 - 24098282
Alignment:
Q  44 aatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcactttt 127  Q
    ||||||||||| ||  ||||||||||   || |||||||||| || |||||||||||||||| | |||||  ||||||||||||    
T  24098199 aatcaattctagaaacaaaatcaattaccctataaatcatcttaatatcataaaatcaattccacaaccttcagaatcactttt 24098282  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 11574313 - 11574362
Alignment:
Q  33 gcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatca 82  Q
    |||| ||||||||||||||||| ||| |||| ||||||||||| ||||||    
T  11574313 gctttaagtaaaatcaattctaaaagtaaaaacaattctacttgaaatca 11574362  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 5465535 - 5465626
Alignment:
Q  30 gtagcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatc 121  Q
    ||||||||||||| ||| ||||||||| | ||||| |||| |||||||| ||||| ||| |||||||||||||||||| |||||||| ||||    
T  5465535 gtagcttcaagtagaattaattctacagggaaaattaattatactttaattcatccaaatatcataaaatcaattctacaacctatataatc 5465626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 1879175 - 1879099
Alignment:
Q  31 tagcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattcta 107  Q
    ||||||||| |  ||||||||||||||| ||||| ||||||  ||||| ||||| |||||| |||||||||||||||    
T  1879175 tagcttcaaatgtaatcaattctacaagtaaaataaattctcttttaactcatccaaacatgataaaatcaattcta 1879099  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 32421998 - 32422058
Alignment:
Q  30 gtagcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaaca 90  Q
    ||||||||||| | ||||||||||||||| ||||| |||| |||||||||||||| |||||    
T  32421998 gtagcttcaaggagaatcaattctacaagtaaaattaattttactttaaatcatccaaaca 32422058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 34449545 - 34449489
Alignment:
Q  46 tcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaa 102  Q
    ||||||||| ||  ||||| ||||||||||||||||||| |||||| ||||||||||    
T  34449545 tcaattctataaacaaaattaattctactttaaatcatccaaacataataaaatcaa 34449489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 6095395 - 6095458
Alignment:
Q  28 tcgtagcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacat 91  Q
    |||||||||| |||| ||| ||||||||||  |||||||||||||||| |||||| | ||||||    
T  6095395 tcgtagcttcgagtagaataaattctacaatcaaaatcaattctacttcaaatcaaccaaacat 6095458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 29922074 - 29922031
Alignment:
Q  31 tagcttcaagtaaaatcaattctacaagaaaaatcaattctact 74  Q
    ||||||||| || ||||||||||||||| |||||||||||||||    
T  29922074 tagcttcaactagaatcaattctacaagcaaaatcaattctact 29922031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 23647629 - 23647584
Alignment:
Q  62 aatcaattctactttaaatcatctaaacatcataaaatcaattcta 107  Q
    |||||||| ||||||| |||||| |||||| |||||||||||||||    
T  23647629 aatcaattttactttacatcatccaaacattataaaatcaattcta 23647584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 23810944 - 23810989
Alignment:
Q  62 aatcaattctactttaaatcatctaaacatcataaaatcaattcta 107  Q
    |||||||| ||||||| |||||| |||||| |||||||||||||||    
T  23810944 aatcaattttactttacatcatccaaacattataaaatcaattcta 23810989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 24803924 - 24804026
Alignment:
Q  31 tagcttcaagtaaaatcaattctacaagaaa----aatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttt 126  Q
    ||||||||| || ||||||||||||||| ||    |||||||| |||||||||||||| |||||| ||| ||||||||||| ||||| ||| ||||||||    
T  24803924 tagcttcaaatagaatcaattctacaagcaagcaaaatcaattgtactttaaatcatccaaacatgatataatcaattctacaacctctag-atcacttt 24804022  T
Q  127 tgac 130  Q
    ||||    
T  24804023 tgac 24804026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 1872304 - 1872389
Alignment:
Q  44 aatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatagaatcacttttga 129  Q
    ||||||||||||||| |||||||||| |  ||||||||||| |||||| |||||| |||||||| | | | || ||||||||||||    
T  1872304 aatcaattctacaagcaaaatcaattttcttttaaatcatccaaacatgataaaaacaattctacaccttctaaaatcacttttga 1872389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 578948 - 578875
Alignment:
Q  31 tagcttcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaatt 104  Q
    ||||||||||||  |||||||||||||| ||||| | |||||||| ||| || ||||||||   ||||||||||    
T  578948 tagcttcaagtagtatcaattctacaagcaaaattatttctacttaaaaacaactaaacatgtcaaaatcaatt 578875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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