View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19122_high_33 (Length: 243)
Name: NF19122_high_33
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 43082604 - 43082760
Alignment:
| Q |
11 |
cacagacacaatgtagtaggtcttagccatgaaacactaactcagttccggtcatggttgttgtgactaattttatgagcatcttgtgcattctgtcaat |
110 |
Q |
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| T |
43082604 |
cacagacacaatgtagtaggtcttagccatgaaacactaactcagttccggtcatggttgttgtgactaattttatgagcatcttgtgcattctgtcaat |
43082703 |
T |
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| Q |
111 |
ccgttaacaaatggctatacctcgatctgtcgcaaacagacaggcagcaactctaat |
167 |
Q |
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| T |
43082704 |
ccgttaacaaaaggctatacctcgatctgtcgcaaacagacaggcagcaactctaat |
43082760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 43082759 - 43082805
Alignment:
| Q |
188 |
atgttcttggccatcgaatgtgatgagttcaaaacctgtgtaatata |
234 |
Q |
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| T |
43082759 |
atgttcttggccatcgaatgtgatgagttcaaaacctgtgtaatata |
43082805 |
T |
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