View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19122_high_35 (Length: 239)
Name: NF19122_high_35
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_high_35 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17193003 - 17192785
Alignment:
| Q |
1 |
tgtagtctcataataccaacattcggaatgaacataaagattacgtggtattaagaaattaattgtagccaacacattgccctttgccacaccttcaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17193003 |
tgtagtctcataataccaacattcagaatgaacaaaaagattacgtggta---agaaattaattgtagccaacacattgccctttgccacaccttcaaaa |
17192907 |
T |
|
| Q |
101 |
caacctcataatgcaagaaaaggtgtaacgccgtttcctccaccctcccacacaacacacaatttttcgatgcctccgcattcaacactcctctagacac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17192906 |
caacctcataatgcaagaaaaggtgtaacgccgtttcctccaccctcccacacaacacacaatttttcgatgcctccgcattcaacactcctctagacac |
17192807 |
T |
|
| Q |
201 |
taggttcacccttgtcggaatt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
17192806 |
taggttcacccttgtcggaatt |
17192785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 28800844 - 28800628
Alignment:
| Q |
7 |
ctcataataccaacattcggaatgaacataaagattacgtggtattaagaaattaa-ttgtagccaacacattgccctttgccacaccttcaaaacaacc |
105 |
Q |
| |
|
|||||||||||||||||| | ||| || |||||||| |||||||||||||||||| ||| | |||| |||| | ||| |||||||||||| || ||| |
|
|
| T |
28800844 |
ctcataataccaacattcaaagtgagcaaaaagattatgtggtattaagaaattaaattggaaccaagacatcactcttcgccacaccttcatcaccacc |
28800745 |
T |
|
| Q |
106 |
tcataatgcaagaaaaggtgtaacgccgtttcctccaccctcccacacaacacacaatttttcgatgcctccgcattcaacactcctctagacactaggt |
205 |
Q |
| |
|
||| ||||||||||||| ||| | | ||||||||||||||| || |||||||||||||| ||||| |||| | |||||||| ||||||||| | | |||| |
|
|
| T |
28800744 |
tcacaatgcaagaaaagatgtgatgtcgtttcctccacccttccgcacaacacacaattcttcgacgccttcccattcaaccctcctctagtcgcaaggt |
28800645 |
T |
|
| Q |
206 |
tcacccttgtcggaatt |
222 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
28800644 |
tcacccttgtcggaatt |
28800628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 9443765 - 9443936
Alignment:
| Q |
7 |
ctcataataccaacattcggaatgaacataaagattacgtggtattaagaaattaat-tgtagccaacacattgccctttgccacaccttcaaaacaacc |
105 |
Q |
| |
|
|||||||||||| ||||| |||| | |||||||| ||||||||| ||||| || |||||| | |||| ||||||||||||||||||| || ||| |
|
|
| T |
9443765 |
ctcataataccaccattcaaaatgtgaaaaaagattatgtggtattacgaaatgaaaatgtagcacagacatcaccctttgccacaccttcaacaccacc |
9443864 |
T |
|
| Q |
106 |
tcataatgcaagaaaaggtgtaacgccgtttcctccaccctcccacacaacacacaatttttcgatgcctcc |
177 |
Q |
| |
|
||| ||||||| ||||| || |||| ||||||||||||||| | ||||| ||||||||| ||||| ||||| |
|
|
| T |
9443865 |
tcacaatgcaaaaaaagatgcaacgtcgtttcctccacccttctgcacaatacacaatttctcgattcctcc |
9443936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 9443930 - 9444016
Alignment:
| Q |
135 |
ttcctccaccctcccacacaacacacaatttttcgatgcctccgcattcaacactcctctagacactaggttcacccttgtcggaat |
221 |
Q |
| |
|
|||||||||||| | ||||| ||||||||| ||||| ||||| ||||||||||||||||| || |||| |||||||||||| |||| |
|
|
| T |
9443930 |
ttcctccacccttctgcacaatacacaatttctcgattcctccacattcaacactcctctatacgctagattcacccttgtcagaat |
9444016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 192
Target Start/End: Original strand, 2516937 - 2517046
Alignment:
| Q |
83 |
tttgccacaccttcaaaacaacctcataatgcaagaaaaggtgtaacgccgtttcctccaccctcccacacaacacacaatttttcgatgcctccgcatt |
182 |
Q |
| |
|
|||||||||||||| || || ||| ||||||| |||||||||| |||||||||| ||||||||| ||||||||| | |||||||| ||||| || |
|
|
| T |
2516937 |
tttgccacaccttcgccaccacttcacaatgcaaaaaaaggtgtagaattgtttcctccatcctcccacaaaacacacaactcttcgatgcatccgcgtt |
2517036 |
T |
|
| Q |
183 |
caacactcct |
192 |
Q |
| |
|
||| |||||| |
|
|
| T |
2517037 |
caaaactcct |
2517046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 4282140 - 4282076
Alignment:
| Q |
7 |
ctcataataccaacattcggaatgaacataaagattacgtggtattaagaaatt-aattgtagcc |
70 |
Q |
| |
|
|||||||||||||||||| ||| | || |||||||||||||||| | |||||| |||||||||| |
|
|
| T |
4282140 |
ctcataataccaacattcaaaattagcaaaaagattacgtggtataatgaaattaaattgtagcc |
4282076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University