View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19122_high_37 (Length: 237)
Name: NF19122_high_37
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 55084030 - 55084253
Alignment:
| Q |
1 |
ctgaaacataagactaatgccattgcaatggtt-aaaaattagtaggttttcttatctgtgcataccactatggttttctgaatggttttcatgttggtt |
99 |
Q |
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| T |
55084030 |
ctgaaacataagactaatgccattgcaatggtttaaaaattagtaggttttcttatctgtgcataccactatggttttctgaatggttttcatgttggtt |
55084129 |
T |
|
| Q |
100 |
tactctctcaaatcttaagcaatcattcaatcttaaagaaagacctctagacagtttcatgtggtctcttgtgaaccatagccgactaatcccttcaaga |
199 |
Q |
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| T |
55084130 |
tactctctcaaatcttaagcaatcattcaatcttaaagaaagacctctagacagtttcatgtgatctcttgtgaaccatagccgactaatcccttcaaga |
55084229 |
T |
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| Q |
200 |
actaagtcaagaacaataaatatg |
223 |
Q |
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| T |
55084230 |
accaagtcaagaacaataaatatg |
55084253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 38029577 - 38029503
Alignment:
| Q |
105 |
tctcaaatcttaagcaatcattcaatcttaaagaaagacctctagacagtttcatgtggtctcttgtgaaccata |
179 |
Q |
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| T |
38029577 |
tctcaagtcttaagcaatcattcaatctttgaaaaagacctcttgagagtatcatgtgatctcttgtgaaccata |
38029503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 38025667 - 38025592
Alignment:
| Q |
105 |
tctcaaatcttaagcaatcattcaatcttaaagaaagacctctagacagtttcatgtggtctcttgtgaaccatag |
180 |
Q |
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| T |
38025667 |
tctcaagtcttgagcgatcattcaatctttgagaaagacctcttgacagtatcatggaatctcttgtgaaccatag |
38025592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 50912564 - 50912497
Alignment:
| Q |
114 |
ttaagcaatcattcaatcttaaagaaagacctctagacagtttcatgtggtctcttgtgaaccatagc |
181 |
Q |
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| T |
50912564 |
ttaagcgataattcaatctttgagaaatacctctagacaatatcatgtgatctcttgtgaaccttagc |
50912497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 38037600 - 38037520
Alignment:
| Q |
99 |
ttactctctcaaatcttaagcaatcattcaatcttaaagaaagacctctagacagtttcatgtggtctcttgtgaaccatag |
180 |
Q |
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| T |
38037600 |
ttactctctcaagt-tcaagcaatcattcaatctttgagaaagacctcttgagagcatcatgtgatctctggtgaacgatag |
38037520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 21605568 - 21605492
Alignment:
| Q |
105 |
tctcaaatcttaagcaatcattcaatcttaaagaaagacctctagacagtttcatgtggtctcttgtgaaccatagc |
181 |
Q |
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|||||| ||||||||||||||| |||||| |||||||||||| || ||| ||||||| |||||||||||||||||| |
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| T |
21605568 |
tctcaagtcttaagcaatcattgaatctttgagaaagacctcttgagagtatcatgtgatctcttgtgaaccatagc |
21605492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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