View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19122_high_6 (Length: 645)

Name: NF19122_high_6
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19122_high_6
NF19122_high_6
[»] chr4 (20 HSPs)
chr4 (83-645)||(45738236-45738798)
chr4 (13-487)||(45732695-45733170)
chr4 (1-144)||(45738087-45738230)
chr4 (500-575)||(35723391-35723467)
chr4 (13-52)||(5131259-5131298)
chr4 (13-72)||(7693999-7694058)
chr4 (13-52)||(19429731-19429770)
chr4 (509-560)||(20521871-20521922)
chr4 (606-645)||(45733334-45733373)
chr4 (18-64)||(1137739-1137785)
chr4 (25-67)||(8469371-8469413)
chr4 (510-560)||(12077815-12077865)
chr4 (16-54)||(46110228-46110266)
chr4 (18-50)||(2592320-2592352)
chr4 (18-50)||(14011261-14011293)
chr4 (510-558)||(20743302-20743350)
chr4 (16-52)||(33534178-33534214)
chr4 (13-53)||(35405969-35406009)
chr4 (19-83)||(37575914-37575978)
chr4 (21-53)||(43824313-43824345)
[»] chr6 (14 HSPs)
chr6 (18-78)||(4420670-4420730)
chr6 (19-64)||(6536975-6537020)
chr6 (19-78)||(9027606-9027665)
chr6 (18-64)||(6647414-6647460)
chr6 (509-575)||(7265600-7265666)
chr6 (18-52)||(27909647-27909681)
chr6 (18-51)||(7785754-7785787)
chr6 (512-577)||(19040341-19040406)
chr6 (527-560)||(32299279-32299312)
chr6 (19-64)||(34403883-34403928)
chr6 (531-575)||(9617442-9617486)
chr6 (19-51)||(20512654-20512686)
chr6 (531-575)||(30866151-30866195)
chr6 (13-45)||(32171489-32171521)
[»] chr7 (10 HSPs)
chr7 (18-72)||(7244707-7244761)
chr7 (12-78)||(12234872-12234938)
chr7 (509-575)||(32308106-32308172)
chr7 (13-77)||(9423578-9423642)
chr7 (21-65)||(44151476-44151520)
chr7 (27-83)||(45078314-45078370)
chr7 (17-64)||(34754807-34754854)
chr7 (509-575)||(22868028-22868094)
chr7 (19-53)||(26935565-26935599)
chr7 (18-83)||(48157098-48157163)
[»] chr2 (9 HSPs)
chr2 (18-64)||(1647263-1647309)
chr2 (512-560)||(18420456-18420504)
chr2 (510-558)||(21782842-21782890)
chr2 (18-86)||(24098129-24098197)
chr2 (18-78)||(31739955-31740015)
chr2 (18-78)||(34652019-34652079)
chr2 (19-53)||(7871671-7871705)
chr2 (18-82)||(27237872-27237936)
chr2 (13-45)||(41817190-41817222)
[»] chr8 (17 HSPs)
chr8 (12-53)||(12851197-12851238)
chr8 (515-575)||(31236584-31236644)
chr8 (18-77)||(4055600-4055659)
chr8 (13-64)||(20672772-20672823)
chr8 (18-53)||(30918140-30918175)
chr8 (13-52)||(31705107-31705146)
chr8 (13-64)||(41606900-41606951)
chr8 (18-52)||(8062356-8062390)
chr8 (18-72)||(25869255-25869309)
chr8 (18-51)||(11183572-11183605)
chr8 (18-83)||(12361219-12361284)
chr8 (13-53)||(2458574-2458614)
chr8 (19-51)||(6950350-6950382)
chr8 (13-53)||(8060691-8060731)
chr8 (13-65)||(8535766-8535818)
chr8 (504-556)||(13844622-13844674)
chr8 (13-53)||(42215314-42215354)
[»] chr3 (12 HSPs)
chr3 (19-64)||(45432936-45432981)
chr3 (18-78)||(31010429-31010489)
chr3 (23-86)||(36887536-36887599)
chr3 (18-52)||(21862184-21862218)
chr3 (18-51)||(5292530-5292563)
chr3 (16-45)||(43115081-43115110)
chr3 (27-84)||(52323871-52323928)
chr3 (13-78)||(52412887-52412952)
chr3 (19-51)||(13371145-13371177)
chr3 (516-560)||(13807162-13807206)
chr3 (12-64)||(25925763-25925815)
chr3 (12-52)||(37825143-37825183)
[»] chr1 (14 HSPs)
chr1 (509-574)||(6427336-6427401)
chr1 (21-65)||(47877139-47877183)
chr1 (19-59)||(48748317-48748357)
chr1 (21-83)||(4549260-4549322)
chr1 (18-64)||(6292520-6292566)
chr1 (18-64)||(10199405-10199451)
chr1 (13-83)||(30257705-30257775)
chr1 (509-558)||(2896145-2896194)
chr1 (18-83)||(31517718-31517783)
chr1 (21-62)||(33723381-33723422)
chr1 (509-558)||(36878447-36878496)
chr1 (19-64)||(37593681-37593726)
chr1 (509-557)||(9709806-9709854)
chr1 (13-53)||(15361062-15361102)
[»] chr5 (16 HSPs)
chr5 (18-53)||(19460594-19460629)
chr5 (19-53)||(12521556-12521590)
chr5 (500-558)||(28588698-28588756)
chr5 (21-83)||(35963271-35963333)
chr5 (13-63)||(36638769-36638819)
chr5 (18-83)||(10125696-10125761)
chr5 (20-53)||(11615530-11615563)
chr5 (19-64)||(17258880-17258925)
chr5 (18-51)||(37526209-37526242)
chr5 (18-51)||(37588370-37588403)
chr5 (18-51)||(37690646-37690679)
chr5 (18-51)||(38104867-38104900)
chr5 (23-64)||(38728434-38728475)
chr5 (21-53)||(9106851-9106883)
chr5 (504-560)||(31084304-31084360)
chr5 (13-49)||(36774719-36774755)
[»] scaffold0089 (1 HSPs)
scaffold0089 (19-51)||(33637-33669)
[»] scaffold0085 (1 HSPs)
scaffold0085 (531-575)||(26401-26445)


Alignment Details
Target: chr4 (Bit Score: 527; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 83 - 645
Target Start/End: Original strand, 45738236 - 45738798
Alignment:
Q  83 caaacaacatctaaaatgattacgacactaagtaaactcaaataataaatcaatccaaacatgtcttcaatgctgaaacttgaaaatgagttaagaaaag 182  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45738236 caaacaatatctaaaatgattacgtcactaagtaaactcaaataataaatcaatccaaacatgtcttaaatgctgaaacttgaaaatgagttaagaaaag 45738335  T
Q  183 agataaaccaacttgttgtcttgcaaaatcctcagctccatcaaaagccaaataaatatgaggcgtattatccataaccaaacgagccaaagaaacagca 282  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45738336 aaataaaccaacttgttgtcttgcaaaatcctcagctccatcaaaagccaaataaatatgaggcgtattgtccataaccaaacgagccaaagaaacagca 45738435  T
Q  283 ttaacgacagtagtaagaccagaaacagcaccacatttcatagtgttcccatccataatagaagcttccatttcaaccgtgcctttgttggtaagaacag 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45738436 ttaacgacagtagtaagaccagaaacagcaccacatttcatagtgtttccatccataatagaagcttccatttcaaccgtgcctttgttggtaagaacag 45738535  T
Q  383 aacctcttccagcgttgaagtgtggaatattctccaactcacgaacctatgatcaatgattattatcagaatcacattcaaaacagaagaaagctatgaa 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  45738536 aacctcttccagcgttgaagtgtggaatattctccaactcacgaacctatgaacaatgattattataagaatcacattcaaaacagaagaaagctatgaa 45738635  T
Q  483 acatggatgcatacacaacacgacatgacactgacacgcctagactgataataatatgagaaaatcacataattcaatttcattgtatgtgtctgcgtct 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45738636 acatggatgcatacacaacacgacatgacactgacacgcctagactgataataatatgagaaaatcatataattcaatttcattgtatgtgtctgcgtct 45738735  T
Q  583 aatttgaagagtgttcgtgctttgaaagtgataaatagtgtgaatgatgaatacatacaacaa 645  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45738736 aatttgaagagtgttcgtgctttgaaagtgataaatagtgtgaatgatgaatacatacaacaa 45738798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 487
Target Start/End: Original strand, 45732695 - 45733170
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataagttctca--aacaacatctaaaatgattacgacac 110  Q
    |||| |||||||||||||||||||||||||||||| ||||| | |||| |||||||||||||||||||| ||  |||   ||| |||||||||| |  |     
T  45732695 tcctcgagagcttatggaaataagctgaaaacatcatatgaacatgtcgtaaattatttctataagttcccataaacggtatccaaaatgattatgttag 45732794  T
Q  111 taagtaaactcaaataataaatcaatccaaacatgtcttcaatgctgaaactt--gaaaatgagttaagaaaagagataaaccaacttgttgtcttgcaa 208  Q
      | |||||| ||||||    | |||||||||||||| |  | |   ||||||  ||||||||| |  ||||||| ||||||||||||||||||||||||    
T  45732795 ggaataaacttaaataag---tgaatccaaacatgtcctacacgtgaaaacttaagaaaatgagattggaaaagaaataaaccaacttgttgtcttgcaa 45732891  T
Q  209 aatcctcagctccatcaaaagccaaataaatatgaggcgtattatccataaccaaacgagccaaagaaacagcattaacgacagtagtaagaccagaaac 308  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| || || ||  |||||||||||||    
T  45732892 aatcctcagctccatcaaaagctaaataaatatgaggagtattatccataaccaaacgagccaaagaaatagcattgacaacggtgctaagaccagaaac 45732991  T
Q  309 agcaccacatttcatagtgttcccatccataatagaagcttccatttcaaccgtgcctttgttggtaagaacagaacctcttccagcgttgaagtgtgga 408  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45732992 agcaccacatttcatagtgtttccatccataatagaagcttccatttcaaccgtgcctttgttggtaagaacagaacctcttccagcgttgaagtgtgga 45733091  T
Q  409 atattctccaactcacgaacctatgatcaatgattattatcagaatcacattcaaaacagaagaaagctatgaaacatg 487  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45733092 atattctccaactcacgaacctatgatcaatgattattataagaatcacattcaaaacagaagaaagctatgaaacatg 45733170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 45738087 - 45738230
Alignment:
Q  1 ataagctatccttccttgagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataagttctcaaacaacatctaaaatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  45738087 ataagctatccttccttgagagcttatggaaataagctgaaaacatcttatgagcttgtcgtaaattatttctataagttctcaaacaatatctaaaatg 45738186  T
Q  101 attacgacactaagtaaactcaaataataaatcaatccaaacat 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  45738187 attacgacactaagtaaactcaaataataaatcaatccaaacat 45738230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 500 - 575
Target Start/End: Complemental strand, 35723467 - 35723391
Alignment:
Q  500 acacgacatgacactgacacgcctagactgataataatatgagaaaat-cacataattcaatttcattgtatgtgtc 575  Q
    ||||||||||||||||||||||| | || | ||||||| ||||||||| ||||||||||||| | ||| ||||||||    
T  35723467 acacgacatgacactgacacgccgacaccgctaataatttgagaaaatacacataattcaatgtaattatatgtgtc 35723391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 5131298 - 5131259
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatcttatg 52  Q
    |||| |||||||||||||||||||||||||||| ||||||    
T  5131298 tcctggagagcttatggaaataagctgaaaacaacttatg 5131259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 7694058 - 7693999
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttc 72  Q
    |||| ||||| |||||||||||||||||||||| ||||||| | |||||| || ||||||    
T  7694058 tcctggagagtttatggaaataagctgaaaacaacttatgaacatgtcattaactatttc 7693999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 19429731 - 19429770
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatcttatg 52  Q
    |||| |||||||||||||||||||||||||||| ||||||    
T  19429731 tcctggagagcttatggaaataagctgaaaacagcttatg 19429770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 560
Target Start/End: Complemental strand, 20521922 - 20521871
Alignment:
Q  509 gacactgacacgcctagactgataataatatgagaaaatcacataattcaat 560  Q
    |||||||||||||| | || ||||||||| ||| ||||||||||||||||||    
T  20521922 gacactgacacgccgataccgataataatttgataaaatcacataattcaat 20521871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 606 - 645
Target Start/End: Original strand, 45733334 - 45733373
Alignment:
Q  606 gaaagtgataaatagtgtgaatgatgaatacatacaacaa 645  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  45733334 gaaagtgataaatattgtgagtgatgaatacatacaacaa 45733373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 1137739 - 1137785
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataa 64  Q
    |||||||||||||||||| ||||||||| ||||||| | ||||||||    
T  1137739 gagagcttatggaaataaactgaaaacaacttatgaacatgtcataa 1137785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 8469413 - 8469371
Alignment:
Q  25 tatggaaataagctgaaaacatcttatgagcttgtcataaatt 67  Q
    ||||||||||||||||||||| ||||||| | |||||||||||    
T  8469413 tatggaaataagctgaaaacaacttatgaacatgtcataaatt 8469371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 510 - 560
Target Start/End: Original strand, 12077815 - 12077865
Alignment:
Q  510 acactgacacgcctagactgataataatatgagaaaatcacataattcaat 560  Q
    ||||||||||| | | |||| ||||||| ||||||||||||||||||||||    
T  12077815 acactgacacgtcaatactgttaataatttgagaaaatcacataattcaat 12077865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 46110228 - 46110266
Alignment:
Q  16 ttgagagcttatggaaataagctgaaaacatcttatgag 54  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  46110228 ttgagagcttatagaaataagctgaaaacaacttatgag 46110266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 2592352 - 2592320
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatctta 50  Q
    |||||||||||||||||||||||||||| ||||    
T  2592352 gagagcttatggaaataagctgaaaacaactta 2592320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 14011261 - 14011293
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatctta 50  Q
    |||||||||||||||||||||||||||| ||||    
T  14011261 gagagcttatggaaataagctgaaaacagctta 14011293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 510 - 558
Target Start/End: Complemental strand, 20743350 - 20743302
Alignment:
Q  510 acactgacacgcctagactgataataatatgagaaaatcacataattca 558  Q
    ||||||||||||| | || ||||||||| ||||||||| ||||||||||    
T  20743350 acactgacacgccgacacggataataatttgagaaaatgacataattca 20743302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 33534214 - 33534178
Alignment:
Q  16 ttgagagcttatggaaataagctgaaaacatcttatg 52  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  33534214 ttgagagcttatgaaaataagctgaaaacaacttatg 33534178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 35405969 - 35406009
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatcttatga 53  Q
    |||| |||||||||||||| ||||||||||||| |||||||    
T  35405969 tcctggagagcttatggaagtaagctgaaaacagcttatga 35406009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 37575978 - 37575914
Alignment:
Q  19 agagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataagttctc 83  Q
    |||| |||||||||| ||||||||||| ||||||||  ||| |||| ||||||  ||||||||||    
T  37575978 agagtttatggaaatgagctgaaaacaacttatgagtatgttataagttattttcataagttctc 37575914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 43824313 - 43824345
Alignment:
Q  21 agcttatggaaataagctgaaaacatcttatga 53  Q
    ||||||||||||||||||||||||| |||||||    
T  43824313 agcttatggaaataagctgaaaacaacttatga 43824345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 4420670 - 4420730
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataag 78  Q
    |||||||||||||||||||||||||||| ||||||| | |||||||| || ||||||||||    
T  4420670 gagagcttatggaaataagctgaaaacagcttatgaacatgtcataatttgtttctataag 4420730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 6536975 - 6537020
Alignment:
Q  19 agagcttatggaaataagctgaaaacatcttatgagcttgtcataa 64  Q
    ||||||||||||||||||||||||||| ||||||| | ||||||||    
T  6536975 agagcttatggaaataagctgaaaacaacttatgaacatgtcataa 6537020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 9027606 - 9027665
Alignment:
Q  19 agagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataag 78  Q
    |||||||||| |||||||||||||||| ||||||  | |||||||| ||||||| |||||    
T  9027606 agagcttatgaaaataagctgaaaacaacttatggacatgtcataagttatttccataag 9027665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 6647414 - 6647460
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataa 64  Q
    ||||||||||| ||||||| |||||||||||||||| | ||||||||    
T  6647414 gagagcttatgaaaataagttgaaaacatcttatgaacatgtcataa 6647460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 575
Target Start/End: Complemental strand, 7265666 - 7265600
Alignment:
Q  509 gacactgacacgcctagactgataataatatgagaaaatcacataattcaatttcattgtatgtgtc 575  Q
    |||||||||||||| | || | ||||||| |||||||||||||||||||| | | ||| ||||||||    
T  7265666 gacactgacacgccaacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtc 7265600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 27909681 - 27909647
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatg 52  Q
    |||||||||||||||||||||||||||| ||||||    
T  27909681 gagagcttatggaaataagctgaaaacaacttatg 27909647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 7785787 - 7785754
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttat 51  Q
    |||||||||||||||||||||||||||| |||||    
T  7785787 gagagcttatggaaataagctgaaaacaacttat 7785754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 577
Target Start/End: Original strand, 19040341 - 19040406
Alignment:
Q  512 actgacacgcctagactgataataatatgagaaaatcacataattcaatttcattgtatgtgtctg 577  Q
    ||||||||||| | || | ||||||| |||||||||||||||||||| | | ||| ||||||||||    
T  19040341 actgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtctg 19040406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 32299279 - 32299312
Alignment:
Q  527 ctgataataatatgagaaaatcacataattcaat 560  Q
    ||||||||||| ||||||||||||||||||||||    
T  32299279 ctgataataatttgagaaaatcacataattcaat 32299312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 34403883 - 34403928
Alignment:
Q  19 agagcttatggaaataagctgaaaacatcttatgagcttgtcataa 64  Q
    |||||||||||||||||| |||||||| ||||||| | ||||||||    
T  34403883 agagcttatggaaataaggtgaaaacaccttatgaacatgtcataa 34403928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 531 - 575
Target Start/End: Original strand, 9617442 - 9617486
Alignment:
Q  531 taataatatgagaaaatcacataattcaatttcattgtatgtgtc 575  Q
    ||||||| |||||||||||||||||||||| | ||| ||||||||    
T  9617442 taataatttgagaaaatcacataattcaatgtaattatatgtgtc 9617486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 20512686 - 20512654
Alignment:
Q  19 agagcttatggaaataagctgaaaacatcttat 51  Q
    ||||||||||||||||||||||||||| |||||    
T  20512686 agagcttatggaaataagctgaaaacaacttat 20512654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 531 - 575
Target Start/End: Complemental strand, 30866195 - 30866151
Alignment:
Q  531 taataatatgagaaaatcacataattcaatttcattgtatgtgtc 575  Q
    ||||||| |||||||||||||||||||||| | ||| ||||||||    
T  30866195 taataatttgagaaaatcacataattcaatgtaattatatgtgtc 30866151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 32171489 - 32171521
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaaca 45  Q
    |||| ||||||||||||||||||||||||||||    
T  32171489 tcctggagagcttatggaaataagctgaaaaca 32171521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 7244707 - 7244761
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttc 72  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||||||||| ||||    
T  7244707 gagagcttatgaaaataagctgaaaacaacttatgagcatgtcataaattgtttc 7244761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 12234938 - 12234872
Alignment:
Q  12 ttccttgagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataag 78  Q
    ||||| |||||||||||||||||||||||||||| |||||   | |||||||| || ||||||||||    
T  12234938 ttcctagagagcttatggaaataagctgaaaacagcttatagacatgtcataagttgtttctataag 12234872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 509 - 575
Target Start/End: Original strand, 32308106 - 32308172
Alignment:
Q  509 gacactgacacgcctagactgataataatatgagaaaatcacataattcaatttcattgtatgtgtc 575  Q
    |||||||||||||| | || | ||||||| |||||||||||||||||||| | | ||||||||||||    
T  32308106 gacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattgtatgtgtc 32308172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 9423642 - 9423578
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataa 77  Q
    |||| |||||||| | ||||||||||||||||| ||||||| | ||||||||||| |||| ||||    
T  9423642 tcctggagagcttcttgaaataagctgaaaacaacttatgaacatgtcataaattgtttccataa 9423578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 44151520 - 44151476
Alignment:
Q  21 agcttatggaaataagctgaaaacatcttatgagcttgtcataaa 65  Q
    ||||||||||||||||||||||||||||||||  | |||||||||    
T  44151520 agcttatggaaataagctgaaaacatcttatggacatgtcataaa 44151476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 45078314 - 45078370
Alignment:
Q  27 tggaaataagctgaaaacatcttatgagcttgtcataaattatttctataagttctc 83  Q
    |||||||||| |||||||| ||||||  | |||||||| ||||||||||||||||||    
T  45078314 tggaaataagttgaaaacagcttatggacatgtcataagttatttctataagttctc 45078370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 34754854 - 34754807
Alignment:
Q  17 tgagagcttatggaaataagctgaaaacatcttatgagcttgtcataa 64  Q
    |||||||| |||||||||||||||||||| |||||  |||||||||||    
T  34754854 tgagagctgatggaaataagctgaaaacaacttataggcttgtcataa 34754807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 575
Target Start/End: Original strand, 22868028 - 22868094
Alignment:
Q  509 gacactgacacgcctagactgataataatatgagaaaatcacataattcaatttcattgtatgtgtc 575  Q
    |||||||||||||| | ||   |||||||||||||||||||||||||||| | | ||| ||||||||    
T  22868028 gacactgacacgccgacaccactaataatatgagaaaatcacataattcagtgtaattatatgtgtc 22868094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 26935599 - 26935565
Alignment:
Q  19 agagcttatggaaataagctgaaaacatcttatga 53  Q
    ||||||||||||||||||||||||||| |||||||    
T  26935599 agagcttatggaaataagctgaaaacagcttatga 26935565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 48157163 - 48157098
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataagttctc 83  Q
    |||| ||||||||||||||||||||||| ||||||  | || ||||| || |||||||||| ||||    
T  48157163 gagatcttatggaaataagctgaaaacagcttatggacatggcataagttgtttctataagctctc 48157098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 1647263 - 1647309
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataa 64  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||    
T  1647263 gagagcttatggaaataagctgaaaacagcttatgagcatgtcataa 1647309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 18420504 - 18420456
Alignment:
Q  512 actgacacgcctagactgataataatatgagaaaatcacataattcaat 560  Q
    ||||||||||| | |||| ||||||| ||||||||||||||||||||||    
T  18420504 actgacacgccaacactgctaataatttgagaaaatcacataattcaat 18420456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 510 - 558
Target Start/End: Complemental strand, 21782890 - 21782842
Alignment:
Q  510 acactgacacgcctagactgataataatatgagaaaatcacataattca 558  Q
    ||||||||||||| | |||| ||||||| ||||||||||||||||||||    
T  21782890 acactgacacgccgacactgctaataatttgagaaaatcacataattca 21782842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 24098129 - 24098197
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataagttctcaaa 86  Q
    ||||||||||||||||||||||||||||  ||||| || ||| || |||| ||||| |||| |||||||    
T  24098129 gagagcttatggaaataagctgaaaacagtttatgggcatgttattaattgtttctgtaagctctcaaa 24098197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 31740015 - 31739955
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataag 78  Q
    |||||||||||||||||| ||||||||| ||||||| | |||||| | || ||||||||||    
T  31740015 gagagcttatggaaataatctgaaaacagcttatgatcatgtcatgagttgtttctataag 31739955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 34652079 - 34652019
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataag 78  Q
    ||||||||||||||||||| |||||||| ||||||  | |||||||| || ||||||||||    
T  34652079 gagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttctataag 34652019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 7871671 - 7871705
Alignment:
Q  19 agagcttatggaaataagctgaaaacatcttatga 53  Q
    ||||||||||||||||||||||||||| |||||||    
T  7871671 agagcttatggaaataagctgaaaacaccttatga 7871705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 27237936 - 27237872
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataagttct 82  Q
    ||||| ||||||||||||||| |||||| ||||||  | ||||||||  | ||||||||||||||    
T  27237936 gagagtttatggaaataagctaaaaacagcttatgtacatgtcataagctgtttctataagttct 27237872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 41817190 - 41817222
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaaca 45  Q
    |||| ||||||||||||||||||||||||||||    
T  41817190 tcctggagagcttatggaaataagctgaaaaca 41817222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 12851197 - 12851238
Alignment:
Q  12 ttccttgagagcttatggaaataagctgaaaacatcttatga 53  Q
    ||||||||||||||||| |||||||| |||||||||||||||    
T  12851197 ttccttgagagcttatgaaaataagccgaaaacatcttatga 12851238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 575
Target Start/End: Complemental strand, 31236644 - 31236584
Alignment:
Q  515 gacacgcctagactgataataatatgagaaaatcacataattcaatttcattgtatgtgtc 575  Q
    |||||||| | |||| ||||||| |||||||||||||||||||||| | ||| ||||||||    
T  31236644 gacacgccgacactgctaataatttgagaaaatcacataattcaatgtaattatatgtgtc 31236584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 4055659 - 4055600
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataa 77  Q
    ||||||||| ||||||||||||||||||  |||||  | |||||||| ||||||||||||    
T  4055659 gagagcttaaggaaataagctgaaaacagtttatggacatgtcataagttatttctataa 4055600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 20672772 - 20672823
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatcttatgagcttgtcataa 64  Q
    |||| ||||||||||| |||||||||||||||| ||||||| | ||||||||    
T  20672772 tcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataa 20672823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 30918140 - 30918175
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatga 53  Q
    |||||||||||||||||||||||||||| |||||||    
T  30918140 gagagcttatggaaataagctgaaaacaacttatga 30918175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 31705107 - 31705146
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatcttatg 52  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  31705107 tccttgagagtttatggaaataagctgaaaacagcttatg 31705146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 41606951 - 41606900
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatcttatgagcttgtcataa 64  Q
    |||| |||||||||||||||||||||||||||| ||| ||| | ||||||||    
T  41606951 tcctagagagcttatggaaataagctgaaaacaacttttgaacatgtcataa 41606900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 8062356 - 8062390
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatg 52  Q
    ||||| |||||||||||||||||||||||||||||    
T  8062356 gagagattatggaaataagctgaaaacatcttatg 8062390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 25869309 - 25869255
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttc 72  Q
    ||||| |||||||||||||||||||||| ||||||  | |||||||| |||||||    
T  25869309 gagagtttatggaaataagctgaaaacaacttatggacatgtcataagttatttc 25869255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 11183572 - 11183605
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttat 51  Q
    |||||||||||||||||||||||||||| |||||    
T  11183572 gagagcttatggaaataagctgaaaacagcttat 11183605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 12361219 - 12361284
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataagttctc 83  Q
    ||||||| ||||||||||| |||||||| ||||||  | ||||||||  |||||||||||| ||||    
T  12361219 gagagctaatggaaataagttgaaaacagcttatggacatgtcataagctatttctataagatctc 12361284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 2458614 - 2458574
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatcttatga 53  Q
    |||| |||||||||||||||||| ||||||||| |||||||    
T  2458614 tcctagagagcttatggaaataaactgaaaacagcttatga 2458574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 6950350 - 6950382
Alignment:
Q  19 agagcttatggaaataagctgaaaacatcttat 51  Q
    ||||||||||||||||||||||||||| |||||    
T  6950350 agagcttatggaaataagctgaaaacaacttat 6950382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 8060691 - 8060731
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatcttatga 53  Q
    |||| |||||||||||||||||||||||||| | |||||||    
T  8060691 tcctagagagcttatggaaataagctgaaaataacttatga 8060731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 8535818 - 8535766
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatcttatgagcttgtcataaa 65  Q
    |||| ||||||||||||||||||||| |||| | ||||| ||| |||||||||    
T  8535818 tcctagagagcttatggaaataagcttaaaatagcttataagcatgtcataaa 8535766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 556
Target Start/End: Complemental strand, 13844674 - 13844622
Alignment:
Q  504 gacatgacactgacacgcctagactgataataatatgagaaaatcacataatt 556  Q
    |||| ||||| |||||||| | |||| ||||||| ||||||||||||||||||    
T  13844674 gacacgacacggacacgccgacactgctaataatttgagaaaatcacataatt 13844622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 42215354 - 42215314
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatcttatga 53  Q
    |||| ||||||||||| |||||||||||||||| |||||||    
T  42215354 tcctggagagcttatgtaaataagctgaaaacagcttatga 42215314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 45432981 - 45432936
Alignment:
Q  19 agagcttatggaaataagctgaaaacatcttatgagcttgtcataa 64  Q
    ||||||||||||||||||||||||||| ||||||| | ||||||||    
T  45432981 agagcttatggaaataagctgaaaacaacttatgaacatgtcataa 45432936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 31010429 - 31010489
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataag 78  Q
    |||||||||||||| ||||||||||||| ||||||  | |||||||| || ||||||||||    
T  31010429 gagagcttatggaattaagctgaaaacagcttatggacatgtcataagttgtttctataag 31010489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 36887536 - 36887599
Alignment:
Q  23 cttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataagttctcaaa 86  Q
    |||||| |||||||||||||||||||||||| | ||||| || || |||  |||||||||||||    
T  36887536 cttatgaaaataagctgaaaacatcttatgaacatgtcaaaagttcttttgataagttctcaaa 36887599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 21862218 - 21862184
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatg 52  Q
    |||||||||||||||||||||||||||| ||||||    
T  21862218 gagagcttatggaaataagctgaaaacaacttatg 21862184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 5292563 - 5292530
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttat 51  Q
    |||||||||||||||||||||||||||| |||||    
T  5292563 gagagcttatggaaataagctgaaaacaacttat 5292530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 43115081 - 43115110
Alignment:
Q  16 ttgagagcttatggaaataagctgaaaaca 45  Q
    ||||||||||||||||||||||||||||||    
T  43115081 ttgagagcttatggaaataagctgaaaaca 43115110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 52323928 - 52323871
Alignment:
Q  27 tggaaataagctgaaaacatcttatgagcttgtcataaattatttctataagttctca 84  Q
    |||||||||| |||||||| ||||||  | |||||||||||||||| ||||| |||||    
T  52323928 tggaaataagttgaaaacagcttatggacgtgtcataaattatttcaataagctctca 52323871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 52412952 - 52412887
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataag 78  Q
    |||| |||||| ||||||||||||||||||||| ||||| | | |||||||  || ||||||||||    
T  52412952 tcctagagagcatatggaaataagctgaaaacagcttataaacatgtcataggttgtttctataag 52412887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 13371145 - 13371177
Alignment:
Q  19 agagcttatggaaataagctgaaaacatcttat 51  Q
    ||||||||||||||||||||||||||| |||||    
T  13371145 agagcttatggaaataagctgaaaacaacttat 13371177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 516 - 560
Target Start/End: Original strand, 13807162 - 13807206
Alignment:
Q  516 acacgcctagactgataataatatgagaaaatcacataattcaat 560  Q
    ||||||| | |||||||| ||| ||||||||||||||||||||||    
T  13807162 acacgccaacactgataacaatttgagaaaatcacataattcaat 13807206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 25925763 - 25925815
Alignment:
Q  12 ttccttgagagcttatggaaataagctgaaaacatcttatgagcttgtcataa 64  Q
    ||||| ||||||||||| ||||||| |||||||| ||||||| | ||||||||    
T  25925763 ttcctggagagcttatgaaaataagttgaaaacagcttatgaacatgtcataa 25925815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 37825143 - 37825183
Alignment:
Q  12 ttccttgagagcttatggaaataagctgaaaacatcttatg 52  Q
    ||||| |||||||||||||||||| ||||||||| ||||||    
T  37825143 ttcctggagagcttatggaaataacctgaaaacaacttatg 37825183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 509 - 574
Target Start/End: Original strand, 6427336 - 6427401
Alignment:
Q  509 gacactgacacgcctagactgataataatatgagaaaatcacataattcaatttcattgtatgtgt 574  Q
    |||||||||||||| | || | ||||||| |||||||||||||||||||||| | ||| |||||||    
T  6427336 gacactgacacgccaacaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgt 6427401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 47877139 - 47877183
Alignment:
Q  21 agcttatggaaataagctgaaaacatcttatgagcttgtcataaa 65  Q
    |||||||| |||||||||||||||| ||||||||| |||||||||    
T  47877139 agcttatgaaaataagctgaaaacaacttatgagcatgtcataaa 47877183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 48748357 - 48748317
Alignment:
Q  19 agagcttatggaaataagctgaaaacatcttatgagcttgt 59  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  48748357 agagcttatggaaataagctgaaaacaacttatgaacttgt 48748317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 4549260 - 4549322
Alignment:
Q  21 agcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataagttctc 83  Q
    ||||||||||||||||||||||||| |||||   | ||||||||||| |||| | ||||||||    
T  4549260 agcttatggaaataagctgaaaacaacttatagacatgtcataaattgtttccaaaagttctc 4549322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 6292520 - 6292566
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataa 64  Q
    ||||||||||| |||||||||||||||| ||||||| | ||||||||    
T  6292520 gagagcttatgaaaataagctgaaaacagcttatgaacatgtcataa 6292566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 10199451 - 10199405
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataa 64  Q
    ||||||||||| |||||||||||||||| ||||||| | ||||||||    
T  10199451 gagagcttatgaaaataagctgaaaacaacttatgaacatgtcataa 10199405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 30257705 - 30257775
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataagttctc 83  Q
    |||| ||| |||||| ||||||||||||||||| ||||||| | |||||||||  |||| |||||| ||||    
T  30257705 tcctggagggcttatagaaataagctgaaaacagcttatgaacatgtcataaaagatttttataagctctc 30257775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 558
Target Start/End: Complemental strand, 2896194 - 2896145
Alignment:
Q  509 gacactgacacgcctagactgataataatatgagaaaatcacataattca 558  Q
    |||||||||||||| | || | ||||||| ||||||||||||||||||||    
T  2896194 gacactgacacgccgacaccgctaataatttgagaaaatcacataattca 2896145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 31517783 - 31517718
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataagttctc 83  Q
    ||||||||||| |||||||||||||||| ||||||| | |||||| | || |||  ||||||||||    
T  31517783 gagagcttatgaaaataagctgaaaacagcttatgaacatgtcatgagttgttttgataagttctc 31517718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 33723422 - 33723381
Alignment:
Q  21 agcttatggaaataagctgaaaacatcttatgagcttgtcat 62  Q
    |||||||||||||||||||||||||||| |||| | ||||||    
T  33723422 agcttatggaaataagctgaaaacatctcatgaacatgtcat 33723381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 558
Target Start/End: Original strand, 36878447 - 36878496
Alignment:
Q  509 gacactgacacgcctagactgataataatatgagaaaatcacataattca 558  Q
    |||||||||||||| | || | ||||||| ||||||||||||||||||||    
T  36878447 gacactgacacgccgacaccgctaataatttgagaaaatcacataattca 36878496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 37593726 - 37593681
Alignment:
Q  19 agagcttatggaaataagctgaaaacatcttatgagcttgtcataa 64  Q
    |||||||||| |||||||||||||||| ||||||| | ||||||||    
T  37593726 agagcttatgaaaataagctgaaaacagcttatgaacatgtcataa 37593681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 557
Target Start/End: Original strand, 9709806 - 9709854
Alignment:
Q  509 gacactgacacgcctagactgataataatatgagaaaatcacataattc 557  Q
    |||||||||| ||||| || | ||||||| |||||||||||||||||||    
T  9709806 gacactgacatgcctacaccgctaataatttgagaaaatcacataattc 9709854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 15361062 - 15361102
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatcttatga 53  Q
    |||| ||||||||||| |||||||||||||||| |||||||    
T  15361062 tcctggagagcttatgaaaataagctgaaaacaacttatga 15361102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 19460594 - 19460629
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatga 53  Q
    |||||||||||||||| |||||||||||||||||||    
T  19460594 gagagcttatggaaatgagctgaaaacatcttatga 19460629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 12521556 - 12521590
Alignment:
Q  19 agagcttatggaaataagctgaaaacatcttatga 53  Q
    ||||||||||||||||||||||||||| |||||||    
T  12521556 agagcttatggaaataagctgaaaacagcttatga 12521590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 558
Target Start/End: Complemental strand, 28588756 - 28588698
Alignment:
Q  500 acacgacatgacactgacacgcctagactgataataatatgagaaaatcacataattca 558  Q
    ||||||||| ||| ||||||||| | || | ||||||| ||||||||||||||||||||    
T  28588756 acacgacataacattgacacgccgacaccggtaataatttgagaaaatcacataattca 28588698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 35963271 - 35963333
Alignment:
Q  21 agcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataagttctc 83  Q
    ||||||||||||||||||||||||| ||||||  | |||||||   |||||| ||||||||||    
T  35963271 agcttatggaaataagctgaaaacaacttatggacatgtcatacgctatttccataagttctc 35963333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 36638769 - 36638819
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatcttatgagcttgtcata 63  Q
    |||| |||||||||||||||||||||||||| | ||||||| | |||||||    
T  36638769 tcctagagagcttatggaaataagctgaaaaaagcttatgaacatgtcata 36638819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 10125761 - 10125696
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttatgagcttgtcataaattatttctataagttctc 83  Q
    ||||||||||| |||||||||||||||| ||||| | | |||||||| || |||  ||||||||||    
T  10125761 gagagcttatgaaaataagctgaaaacaccttatcaacatgtcataagttgtttacataagttctc 10125696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 11615530 - 11615563
Alignment:
Q  20 gagcttatggaaataagctgaaaacatcttatga 53  Q
    |||||||||||||||||||||||||| |||||||    
T  11615530 gagcttatggaaataagctgaaaacagcttatga 11615563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 17258925 - 17258880
Alignment:
Q  19 agagcttatggaaataagctgaaaacatcttatgagcttgtcataa 64  Q
    |||||||||| |||||||||||||||| ||||||| | ||||||||    
T  17258925 agagcttatgaaaataagctgaaaacagcttatgaacatgtcataa 17258880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 37526242 - 37526209
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttat 51  Q
    |||||||||||||||||||||||||||| |||||    
T  37526242 gagagcttatggaaataagctgaaaacagcttat 37526209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 37588403 - 37588370
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttat 51  Q
    |||||||||||||||||||||||||||| |||||    
T  37588403 gagagcttatggaaataagctgaaaacagcttat 37588370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 37690679 - 37690646
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttat 51  Q
    |||||||||||||||||||||||||||| |||||    
T  37690679 gagagcttatggaaataagctgaaaacagcttat 37690646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 38104900 - 38104867
Alignment:
Q  18 gagagcttatggaaataagctgaaaacatcttat 51  Q
    |||||||||||||||||||||||||||| |||||    
T  38104900 gagagcttatggaaataagctgaaaacaacttat 38104867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 38728434 - 38728475
Alignment:
Q  23 cttatggaaataagctgaaaacatcttatgagcttgtcataa 64  Q
    ||||||||||||||||||||||| |||| |||| ||||||||    
T  38728434 cttatggaaataagctgaaaacagcttaggagcatgtcataa 38728475  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 9106851 - 9106883
Alignment:
Q  21 agcttatggaaataagctgaaaacatcttatga 53  Q
    ||||||||||||||||||||||||| |||||||    
T  9106851 agcttatggaaataagctgaaaacagcttatga 9106883  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 560
Target Start/End: Original strand, 31084304 - 31084360
Alignment:
Q  504 gacatgacactgacacgcctagactgataataatatgagaaaatcacataattcaat 560  Q
    |||| |||||||||||||| | || | ||||||| ||| ||||||||||||||||||    
T  31084304 gacacgacactgacacgccgacacagctaataatttgaaaaaatcacataattcaat 31084360  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 36774755 - 36774719
Alignment:
Q  13 tccttgagagcttatggaaataagctgaaaacatctt 49  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  36774755 tcctggagagcttatggaaataagctgaaaccatctt 36774719  T

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Target: scaffold0089 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 33669 - 33637
Alignment:
Q  19 agagcttatggaaataagctgaaaacatcttat 51  Q
    ||||||||||||||||||||||||||| |||||    
T  33669 agagcttatggaaataagctgaaaacaacttat 33637  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 531 - 575
Target Start/End: Original strand, 26401 - 26445
Alignment:
Q  531 taataatatgagaaaatcacataattcaatttcattgtatgtgtc 575  Q
    ||||||| |||||||||||||||||||||| || || ||||||||    
T  26401 taataatttgagaaaatcacataattcaatgtcgttatatgtgtc 26445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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