View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19122_high_8 (Length: 560)

Name: NF19122_high_8
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19122_high_8
NF19122_high_8
[»] chr7 (3 HSPs)
chr7 (187-550)||(11098758-11099121)
chr7 (18-125)||(11098589-11098696)
chr7 (33-114)||(781351-781432)
[»] chr6 (2 HSPs)
chr6 (187-550)||(17998208-17998571)
chr6 (18-125)||(17998633-17998740)
[»] chr8 (3 HSPs)
chr8 (187-340)||(36283417-36283563)
chr8 (18-125)||(36283625-36283732)
chr8 (35-80)||(31710416-31710461)
[»] chr1 (1 HSPs)
chr1 (198-340)||(19913083-19913217)
[»] chr5 (2 HSPs)
chr5 (198-340)||(40571576-40571711)
chr5 (32-80)||(11203645-11203693)
[»] chr3 (2 HSPs)
chr3 (377-499)||(6560467-6560591)
chr3 (35-80)||(17594919-17594964)
[»] scaffold0010 (1 HSPs)
scaffold0010 (33-114)||(128644-128725)
[»] chr4 (4 HSPs)
chr4 (23-113)||(10755777-10755867)
chr4 (23-113)||(10969546-10969636)
chr4 (31-112)||(723298-723379)
chr4 (34-77)||(12325892-12325935)
[»] scaffold0130 (1 HSPs)
scaffold0130 (35-85)||(17288-17338)


Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 187 - 550
Target Start/End: Original strand, 11098758 - 11099121
Alignment:
Q  187 gagacaatatatttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataactgtagctaattggaagaatat 286  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11098758 gagacaatatatttccacttgttgggtaaataatgctaggaaagaattaagaaattgtatatttaagaactgacataactgtagctaattggaagaatat 11098857  T
Q  287 agaaaatagtaataacaaaatctgtaagtcattcatggccactggaattcaatactaannnnnnnnnnnnnnnnnnnnnnnnactccttcaagaatgaaa 386  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||                        ||||||||||||||||||    
T  11098858 agaaaatagtaataacaaaatctgtaagtcattcatggtcaatggaattcaatactaatattatttatttttattttttttaactccttcaagaatgaaa 11098957  T
Q  387 aagagttgaatctgaagtttctcatagtacagaaaactagcatatgaaactaattgtttgttctatatttaaagatatttaaacacagaattgatgctca 486  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11098958 aagagttgagtcagaagtttctcatagtacagaaaactagcatatgaaactaattgtttgttctatatttaaagatatttaaacacaaaattgatgctca 11099057  T
Q  487 tttgtttcttgaagtgaagaaacgtaatattctcctggagtgtttacaacatacttgccctatg 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11099058 tttgtttcttgaagtgaagaaacgtaatattctcctggagtgtttacaacatacttgccctatg 11099121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 11098589 - 11098696
Alignment:
Q  18 aaattcaaccaataagaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatgg 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11098589 aaattcaaccaacaagaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatgg 11098688  T
Q  118 aagaatgg 125  Q
    ||||||||    
T  11098689 aagaatgg 11098696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 781432 - 781351
Alignment:
Q  33 gaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaaca 114  Q
    ||||||||||| ||||||||||||||||| | | |||||||| || ||||| ||| |||||||| ||| || ||||||||||    
T  781432 gaggagctcaattcatcaccatcatagtcttccatatgaacaagcagagatgaatacattatggtttctcttgatgccaaca 781351  T

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Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 187 - 550
Target Start/End: Complemental strand, 17998571 - 17998208
Alignment:
Q  187 gagacaatatatttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataactgtagctaattggaagaatat 286  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17998571 gagacaatatatttccacttgttgggtaaataatgctaggaaagaattaagaaattgtatatttaagaactgacataactgtagctaattggaagaatat 17998472  T
Q  287 agaaaatagtaataacaaaatctgtaagtcattcatggccactggaattcaatactaannnnnnnnnnnnnnnnnnnnnnnnactccttcaagaatgaaa 386  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||                        ||||||||||||||||||    
T  17998471 agaaaatagtaataacaaaatctgtaagtcattcatggtcaatggaattcaatactaatattatttatttttattttttttaactccttcaagaatgaaa 17998372  T
Q  387 aagagttgaatctgaagtttctcatagtacagaaaactagcatatgaaactaattgtttgttctatatttaaagatatttaaacacagaattgatgctca 486  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17998371 aagagttgagtcagaagtttctcatagtacagaaaactagcatatgaaactaattgtttgttctatatttaaagatatttaaacacaaaattgatgctca 17998272  T
Q  487 tttgtttcttgaagtgaagaaacgtaatattctcctggagtgtttacaacatacttgccctatg 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17998271 tttgtttcttgaagtgaagaaacgtaatattctcctggagtgtttacaacatacttgccctatg 17998208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 17998740 - 17998633
Alignment:
Q  18 aaattcaaccaataagaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatgg 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17998740 aaattcaaccaacaagaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatgg 17998641  T
Q  118 aagaatgg 125  Q
    ||||||||    
T  17998640 aagaatgg 17998633  T

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Target: chr8 (Bit Score: 116; Significance: 9e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 187 - 340
Target Start/End: Complemental strand, 36283563 - 36283417
Alignment:
Q  187 gagacaatatatttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataactgtagctaattggaagaatat 286  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  36283563 gagacaatatatttccacttgttggataagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataactgtagttaattggaagagtat 36283464  T
Q  287 agaaaatagtaataacaaaatctgtaagtcattcatggccactggaattcaata 340  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||    
T  36283463 agaaaatagt-------aaatctgtaagtcattcatggccactggaattcaata 36283417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 36283732 - 36283625
Alignment:
Q  18 aaattcaaccaataagaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatgg 117  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36283732 aaattcaaccaacaagaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacttgg 36283633  T
Q  118 aagaatgg 125  Q
    ||||||||    
T  36283632 aagaatgg 36283625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 31710416 - 31710461
Alignment:
Q  35 ggagctcaaatcatcaccatcatagtcattcttatgaacaggcgga 80  Q
    ||||||||| || |||||||||||||||| ||||||||||||||||    
T  31710416 ggagctcaattcgtcaccatcatagtcatccttatgaacaggcgga 31710461  T

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Target: chr1 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 198 - 340
Target Start/End: Complemental strand, 19913217 - 19913083
Alignment:
Q  198 tttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataactgtagctaattggaagaatatagaaaatagta 297  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||     
T  19913217 tttccacttgttgggtaagtaatgctaggcaagaattaagaaattgtatatttaagaactgacataac-gtagttaattggaagaatatagaaaatagt- 19913120  T
Q  298 ataacaaaatctgtaagtcattcatggccactggaattcaata 340  Q
          |||||||||||||||||||||||||||||||||||||    
T  19913119 ------aaatctgtaagtcattcatggccactggaattcaata 19913083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 198 - 340
Target Start/End: Complemental strand, 40571711 - 40571576
Alignment:
Q  198 tttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataactgtagctaattggaagaatatagaaaatagta 297  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |     
T  40571711 tttccgcttgttgggtaagtaatgctaggcaagaattaagaaattgtatatttaagaaccgacataactgtagttaattggaagaatatagaaaataat- 40571613  T
Q  298 ataacaaaatctgtaagtcattcatggccactggaattcaata 340  Q
          |||||||||||||||||||||||||||||||||||||    
T  40571612 ------aaatctgtaagtcattcatggccactggaattcaata 40571576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 11203645 - 11203693
Alignment:
Q  32 agaggagctcaaatcatcaccatcatagtcattcttatgaacaggcgga 80  Q
    |||||||||||| || |||||||||||||| | ||||| ||||||||||    
T  11203645 agaggagctcaattcgtcaccatcatagtcttccttataaacaggcgga 11203693  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 499
Target Start/End: Complemental strand, 6560591 - 6560467
Alignment:
Q  377 aagaatgaaaaagagttgaatctgaagtttctcatagtacagaaaactagcat-atgaaactaattgtttgttctatatttaaa--gatatttaaacaca 473  Q
    |||||||||||||| |||||| | |||||||||||||||||  |||||||||| | |||||||||||||||| ||||||  |||  |||| ||||||| |    
T  6560591 aagaatgaaaaagacttgaatgt-aagtttctcatagtacaacaaactagcattacgaaactaattgtttgtactatatacaaaaagataattaaacaga 6560493  T
Q  474 gaattgatgctcatttgtttcttgaa 499  Q
    |||||||||||| |  ||||||||||    
T  6560492 gaattgatgctcgtccgtttcttgaa 6560467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 17594919 - 17594964
Alignment:
Q  35 ggagctcaaatcatcaccatcatagtcattcttatgaacaggcgga 80  Q
    ||||||||| || |||||||||||||||| ||| ||||||||||||    
T  17594919 ggagctcaattcgtcaccatcatagtcatccttgtgaacaggcgga 17594964  T

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Target: scaffold0010 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 128725 - 128644
Alignment:
Q  33 gaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaaca 114  Q
    ||||||||||| ||||||||||||||||||| |||||||||| || ||||| ||| |||||||| ||| || ||||||||||    
T  128725 gaggagctcaattcatcaccatcatagtcatccttatgaacatgcagagatgaatacattatggtttctcttgatgccaaca 128644  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 10755777 - 10755867
Alignment:
Q  23 caaccaataagaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaac 113  Q
    ||||||| ||||||| ||||| |||| | ||| |||||||| || |||| ||||||||||| |||||||| ||| ||| ||||||||||||    
T  10755777 caaccaacaagaggacctcaattcataaacattatagtcatcctcatgagcaggcggagatgaattcattgtggtttctctcgatgccaac 10755867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 10969546 - 10969636
Alignment:
Q  23 caaccaataagaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaac 113  Q
    ||||||| ||||||| ||||| |||| | ||| |||||||| || |||| ||||||||||| |||||||| ||| ||| ||||||||||||    
T  10969546 caaccaacaagaggacctcaattcataaacattatagtcatcctcatgagcaggcggagatgaattcattgtggtttctctcgatgccaac 10969636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 723298 - 723379
Alignment:
Q  31 aagaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaa 112  Q
    ||||||| ||||| |||| | ||| ||||||||||| |||| ||||||||||| |||||||||||| | | |||||||||||    
T  723298 aagaggacctcaattcataaacattatagtcattctcatgagcaggcggagatgaattcattatggttcctctcgatgccaa 723379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 12325892 - 12325935
Alignment:
Q  34 aggagctcaaatcatcaccatcatagtcattcttatgaacaggc 77  Q
    ||||||||||||| |||||||||||||| | |||||||||||||    
T  12325892 aggagctcaaatcgtcaccatcatagtcctccttatgaacaggc 12325935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 17338 - 17288
Alignment:
Q  35 ggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataa 85  Q
    |||| |||| || |||||||||||||||| |||||||||||||||| ||||    
T  17338 ggagttcaattcgtcaccatcatagtcatccttatgaacaggcggatataa 17288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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