View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19122_low_10 (Length: 530)
Name: NF19122_low_10
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 209 - 512
Target Start/End: Original strand, 33392520 - 33392825
Alignment:
| Q |
209 |
gtatctatgcaaaagttacttcttttgattttttaaacgagccatgctatatcttgcaaagagagttctcatgaattccgtgaatacggcgttttatact |
308 |
Q |
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| T |
33392520 |
gtatctatgcaaaagttacttcttttgattttttaaacgagccatgctatatcttgcaaagagagttctcatgaattccgtgaatacggcgttttatact |
33392619 |
T |
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| Q |
309 |
tctctcttatatgctcttaaagtcctctaatatttatagctaaaaagaatagatg-ttaattgtaaggaccataggtaatagaaaatcaagaatttatgc |
407 |
Q |
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| T |
33392620 |
tctctcttatatgctcttaaagtcctctaatatttatagctaaaaagaatagatgattaattgtaaggaccataggtaatagaaaatcaagaatttatgc |
33392719 |
T |
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| Q |
408 |
aaatttccatagacacatacaccatcaatattaaagctga-nnnnnnnnnaaaataattatagctcaatttgctgaacagcttcaaacatttaaattagt |
506 |
Q |
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| T |
33392720 |
aaatttccatggacacatacaccatcaatattaaagctgatttttttttaaaaataattatagttcaatttgctgaacagcttcaaacatttaaattagt |
33392819 |
T |
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| Q |
507 |
aagaac |
512 |
Q |
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| T |
33392820 |
aagaac |
33392825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 33392369 - 33392535
Alignment:
| Q |
15 |
gatccaaactacagatatcgagagttaggacttagggccggataggttggatggtaagctttgattatattttttgggtcatgtgctaacaagtgctcta |
114 |
Q |
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| T |
33392369 |
gatccaaactacagatatcgagagttaggacttagggccggataggttggatggtaagctttgattatattttttgggtcatgtgctaacaagtgctcta |
33392468 |
T |
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| Q |
115 |
aaagtgttgtttaagaaagctacaaaggaaaagtttgtcttcgaaatataagtatctatgcaaaagt |
181 |
Q |
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| T |
33392469 |
aaagtgttgtttaagaaagctacaaaggaaaagtttgtcttcgaaatataagtatctatgcaaaagt |
33392535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 17436225 - 17436303
Alignment:
| Q |
78 |
attatattttttggg-tcatgtgctaacaagtgctctaaaagtgttgtttaagaaagctacaaaggaaaagtttgtctt |
155 |
Q |
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| T |
17436225 |
attatattttttggggtcatgttctaacaagtgctctaaatatgttgtcacagaaagctagaaagggaaagtttgtctt |
17436303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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