View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19122_low_14 (Length: 447)
Name: NF19122_low_14
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 55076608 - 55076942
Alignment:
| Q |
16 |
aatatgcttcaaggaccatgtcgtgccttccttggtgaccttgctgccggtgatcaccgtcgaatgagaatgggcaatgccatgttctctttcttcatgg |
115 |
Q |
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| T |
55076608 |
aatatgcttcaaggaccctgtcgtgccttccttggtgaccttgctgccggtgatcaccgtagaatgagaatgggcaatgccatgttctctttcttcatgg |
55076707 |
T |
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| Q |
116 |
ccgtgggaaatatccttggttatgccgccggctctttcagcaaactctatcacatgtttcctttcacccaaactaaagcttgcgatgtcttttgcgctaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55076708 |
ccgtgggaaatatccttggttatgccgccggctctttcagcaaactctatcacatgtttcctttcacccaaactaaagcttgcgatgtcttttgcgctaa |
55076807 |
T |
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| Q |
216 |
tctcaaaacatgtttcttcttatcaatattccttctcgctctcgtttcttcctttgctctatattacgtagaagacattccgctccaatcaaaaccacaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
55076808 |
tctcaaaacatgtttcttcttatcaatattccttctcgctctcgtttcttcctttgctctatattacgttgaagacattccgctccaatcaaaaccacaa |
55076907 |
T |
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| Q |
316 |
tcacaatcaaaggtaattaacttgtgtcccctcca |
350 |
Q |
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| T |
55076908 |
tcacaatcaaaggtaattaacttgcgtcccctcca |
55076942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 372 - 429
Target Start/End: Original strand, 55076966 - 55077023
Alignment:
| Q |
372 |
acaatagtcaatgttgataatttataggatgacgtcggctgcttcggggagttgttaa |
429 |
Q |
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| T |
55076966 |
acaattgtcaatgtttgtaatttataggatgacgtcggctgcttcggggagttgttaa |
55077023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 15125445 - 15125312
Alignment:
| Q |
16 |
aatatgcttcaaggaccatgtcgtgccttccttggtgaccttgctgccggtgatcaccgtcgaatgagaatgggcaatgccatgttctctttcttcatgg |
115 |
Q |
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||||||||||||||||| |||||||||||| |||||||||| |||| ||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |
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| T |
15125445 |
aatatgcttcaaggaccttgtcgtgccttcattggtgacctcgctggtggtgatcaccgtcgaatgagaattggcaatgggatgttctcttttttcatgg |
15125346 |
T |
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| Q |
116 |
ccgtgggaaatatccttggttatgccgccggctc |
149 |
Q |
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|||| || ||| ||||||||||||| || ||||| |
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| T |
15125345 |
ccgtcggtaatgtccttggttatgctgctggctc |
15125312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 43665688 - 43665606
Alignment:
| Q |
112 |
atggccgtgggaaatatccttggttatgccgccggctctttcagcaaactctatcacatgtttcctttcacccaaactaaagc |
194 |
Q |
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|||||||| || || ||||| ||||| |||||||| ||| ||||||||||| |||| ||||||| |||||| |||| ||||| |
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| T |
43665688 |
atggccgtcggtaacatcctcggttacgccgccggtgcttacagcaaactctttcacgtgtttccgttcaccaaaacaaaagc |
43665606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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