View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19122_low_15 (Length: 435)

Name: NF19122_low_15
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19122_low_15
NF19122_low_15
[»] chr1 (19 HSPs)
chr1 (130-394)||(17193223-17193488)
chr1 (259-399)||(17184088-17184226)
chr1 (259-399)||(17196180-17196316)
chr1 (136-205)||(17184245-17184314)
chr1 (136-205)||(17196092-17196161)
chr1 (78-120)||(10338233-10338275)
chr1 (78-120)||(43325903-43325945)
chr1 (79-120)||(42429699-42429740)
chr1 (78-119)||(47795005-47795046)
chr1 (79-118)||(47796395-47796434)
chr1 (78-120)||(11981814-11981856)
chr1 (78-120)||(24686295-24686337)
chr1 (78-120)||(45378442-45378484)
chr1 (78-120)||(47793071-47793113)
chr1 (78-120)||(49243882-49243924)
chr1 (78-119)||(21447445-21447486)
chr1 (78-118)||(6941463-6941503)
chr1 (82-118)||(17054332-17054368)
chr1 (78-118)||(24705469-24705509)
[»] chr7 (9 HSPs)
chr7 (78-120)||(24162116-24162158)
chr7 (78-120)||(1644328-1644370)
chr7 (78-120)||(10282006-10282048)
chr7 (78-120)||(26175385-26175427)
chr7 (78-120)||(35526584-35526626)
chr7 (79-120)||(24689074-24689115)
chr7 (75-116)||(46898236-46898277)
chr7 (79-119)||(4399766-4399806)
chr7 (78-118)||(5800989-5801029)
[»] chr6 (3 HSPs)
chr6 (78-120)||(3306922-3306964)
chr6 (78-120)||(26209227-26209269)
chr6 (79-120)||(9740531-9740572)
[»] chr5 (7 HSPs)
chr5 (78-120)||(1349763-1349805)
chr5 (78-120)||(19134864-19134906)
chr5 (78-117)||(40591419-40591458)
chr5 (78-120)||(17367517-17367559)
chr5 (78-120)||(25413562-25413604)
chr5 (79-120)||(35781472-35781513)
chr5 (78-118)||(6537997-6538037)
[»] chr4 (6 HSPs)
chr4 (78-120)||(6046362-6046404)
chr4 (78-120)||(19298461-19298503)
chr4 (78-118)||(7238838-7238878)
chr4 (78-120)||(44886277-44886319)
chr4 (78-120)||(49867207-49867249)
chr4 (78-120)||(54175939-54175981)
[»] chr3 (7 HSPs)
chr3 (78-120)||(8708124-8708166)
chr3 (78-120)||(9060011-9060053)
chr3 (82-120)||(23027534-23027572)
chr3 (78-119)||(10334292-10334333)
chr3 (78-118)||(54981994-54982034)
chr3 (78-120)||(3942515-3942557)
chr3 (78-120)||(34794410-34794452)
[»] chr8 (3 HSPs)
chr8 (79-120)||(1030487-1030528)
chr8 (78-120)||(35308082-35308124)
chr8 (78-119)||(5765311-5765352)
[»] scaffold0016 (1 HSPs)
scaffold0016 (78-120)||(205349-205391)
[»] chr2 (5 HSPs)
chr2 (78-120)||(3256209-3256251)
chr2 (82-120)||(20612798-20612836)
chr2 (78-120)||(21479510-21479552)
chr2 (78-120)||(42676571-42676613)
chr2 (78-118)||(30666368-30666408)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 130 - 394
Target Start/End: Original strand, 17193223 - 17193488
Alignment:
Q  130 agatgaggtttcaaatcttatagctgtccaaatgtactattgcttgccctgctgcttatcgaaacatggttttctttacctgctagttcatcttaatctt 229  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17193223 agatgaggtttcaaaacttatagctgtccaaatgtactattgcttgccctgctgcttatcgaaacatggttttctttagctgctagttcatcttaatctt 17193322  T
Q  230 aaaatctgtttaggtgttataaaaggagtagtaaactaatatgttggcttcataatttgagtggaagtgaagtaataattaaatcttcatattacataag 329  Q
    |||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17193323 aaaaactgtttaggtgttataaaaggagtagtgaacttatatgttggcttcataatttgagtggaagtgaagtaataattaaatcttcatattacataag 17193422  T
Q  330 ttttgcattgaacatcttacataaattgtttaggtttcttgtttttgcaata-ttcttcaaatctt 394  Q
    ||||||||| ||| ||||||||||||||||| | |||| || |||||||| | |||||||||||||    
T  17193423 ttttgcattaaacgtcttacataaattgtttcgatttcctgattttgcaagatttcttcaaatctt 17193488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 259 - 399
Target Start/End: Complemental strand, 17184226 - 17184088
Alignment:
Q  259 agtaaactaatatgttggcttcataatttgagtggaagtgaagtaataattaaatcttcatattacataagttttgcattgaacatcttacataaattgt 358  Q
    |||||||| ||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  17184226 agtaaacttatatgttggctt--taatttgagtggaagtgaagtaatagttaaatcttcatattacataagttttgcattgaacgtcttacataaactgt 17184129  T
Q  359 ttaggtttcttgtttttgcaatattcttcaaatctttccat 399  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17184128 ttaggtttcttgtttttgcaatattcttcaaatctttccat 17184088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 259 - 399
Target Start/End: Original strand, 17196180 - 17196316
Alignment:
Q  259 agtaaactaatatgttggcttcataatttgagtggaagtgaagtaataattaaatcttcatattacataagttttgcattgaacatcttacataaattgt 358  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||| ||||||||||| |||    
T  17196180 agtaaacttatatgttggcttcataatttgagtggaagtgaagtaataa----atcttcatattacataagttttgcattgaacgtcttacataaactgt 17196275  T
Q  359 ttaggtttcttgtttttgcaatattcttcaaatctttccat 399  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17196276 ttaggtttcttgtttttgcaatattcttcaaatctttccat 17196316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 17184314 - 17184245
Alignment:
Q  136 ggtttcaaatcttatagctgtccaaatgtactattgcttgccctgctgcttatcgaaacatggttttctt 205  Q
    ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17184314 ggtttcaaaacttatagctgttcaaatgtactattgctttccctgctgcttatcgaaacatggttttctt 17184245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 17196092 - 17196161
Alignment:
Q  136 ggtttcaaatcttatagctgtccaaatgtactattgcttgccctgctgcttatcgaaacatggttttctt 205  Q
    ||||||||  ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17196092 ggtttcaagacttatagctgttcaaatgtactattgctttccctgctgcttatcgaaacatggttttctt 17196161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 10338233 - 10338275
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  10338233 cttcaaatgagaagctgttaagagcagcttctcaaaaaataga 10338275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 43325903 - 43325945
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    |||||||||||||||||||||||||||||| | ||||||||||    
T  43325903 cttcaaatgagaaactgttaagagcagcttcttaaaaaataga 43325945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 42429740 - 42429699
Alignment:
Q  79 ttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  42429740 ttcaaatgagaagctgttaagagcagcttctcaaaaaataga 42429699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 47795005 - 47795046
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaatag 119  Q
    ||||||||||||| |||||||||||||||| |||||||||||    
T  47795005 cttcaaatgagaagctgttaagagcagcttctcaaaaaatag 47795046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 47796434 - 47796395
Alignment:
Q  79 ttcaaatgagaaactgttaagagcagcttttcaaaaaata 118  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  47796434 ttcaaatgagaagctgttaagagcagcttctcaaaaaata 47796395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 11981856 - 11981814
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||||||||||||||| | ||||||||||    
T  11981856 cttcaaatgagaagctgttaagagcagcttctaaaaaaataga 11981814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 24686337 - 24686295
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||||||||||| ||| ||||||||||||    
T  24686337 cttcaaatgagaagctgttaagagcaacttctcaaaaaataga 24686295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 45378484 - 45378442
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| ||||| |||||||||| ||||||||||||    
T  45378484 cttcaaatgagaagctgttcagagcagcttctcaaaaaataga 45378442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 47793071 - 47793113
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    |||||||||||||  ||||||||||||||| ||||||||||||    
T  47793071 cttcaaatgagaagttgttaagagcagcttctcaaaaaataga 47793113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 49243924 - 49243882
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||    
T  49243924 cttcaaatgagaagctgttaggagcagcttctcaaaaaataga 49243882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 21447445 - 21447486
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaatag 119  Q
    ||||||||||||| |||||||||| ||||| |||||||||||    
T  21447445 cttcaaatgagaagctgttaagagtagcttctcaaaaaatag 21447486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 6941503 - 6941463
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaata 118  Q
    ||||||||||||| ||||||| |||||||| ||||||||||    
T  6941503 cttcaaatgagaagctgttaaaagcagcttctcaaaaaata 6941463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 17054368 - 17054332
Alignment:
Q  82 aaatgagaaactgttaagagcagcttttcaaaaaata 118  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  17054368 aaatgagaagctgttaagagcagcttctcaaaaaata 17054332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 24705509 - 24705469
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaata 118  Q
    ||||||||||||| ||||||||||||| || ||||||||||    
T  24705509 cttcaaatgagaagctgttaagagcagtttctcaaaaaata 24705469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 24162116 - 24162158
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  24162116 cttcaaatgagaagctgttaagagcagcttctcaaaaaataga 24162158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 1644328 - 1644370
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||||||||||| ||| ||||||||||||    
T  1644328 cttcaaatgagaagctgttaagagcatcttctcaaaaaataga 1644370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 10282006 - 10282048
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||||||||| ||||| ||||||||||||    
T  10282006 cttcaaatgagaagctgttaagagtagcttctcaaaaaataga 10282048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 26175385 - 26175427
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| | |||||||||||||| ||||||||||||    
T  26175385 cttcaaatgagaagcagttaagagcagcttctcaaaaaataga 26175427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 35526626 - 35526584
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||    
T  35526626 cttcaaatgagaagctgttaaaagcagcttctcaaaaaataga 35526584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 24689074 - 24689115
Alignment:
Q  79 ttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    |||||||||||| |||||||||||||||| |||| |||||||    
T  24689074 ttcaaatgagaagctgttaagagcagcttctcaagaaataga 24689115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 46898277 - 46898236
Alignment:
Q  75 catcttcaaatgagaaactgttaagagcagcttttcaaaaaa 116  Q
    |||||||||||||||| |||||||||| ||||| ||||||||    
T  46898277 catcttcaaatgagaagctgttaagagtagcttctcaaaaaa 46898236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 4399806 - 4399766
Alignment:
Q  79 ttcaaatgagaaactgttaagagcagcttttcaaaaaatag 119  Q
    |||||||||||| ||||| |||||||||| |||||||||||    
T  4399806 ttcaaatgagaagctgttgagagcagcttctcaaaaaatag 4399766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 5800989 - 5801029
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaata 118  Q
    ||||||||||||| |||||||||| ||||| ||||||||||    
T  5800989 cttcaaatgagaagctgttaagagtagcttctcaaaaaata 5801029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 3306922 - 3306964
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  3306922 cttcaaatgagaagctgttaagagcagcttctcaaaaaataga 3306964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 26209269 - 26209227
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  26209269 cttcaaatgagaagctgttaagagcagcttctcaaaaaataga 26209227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 9740531 - 9740572
Alignment:
Q  79 ttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||| ||||||||||||||| ||||| ||||||||||||    
T  9740531 ttcaaatcagaaactgttaagagtagcttgtcaaaaaataga 9740572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 1349805 - 1349763
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  1349805 cttcaaatgagaagctgttaagagcagcttctcaaaaaataga 1349763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 19134906 - 19134864
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  19134906 cttcaaatgagaagctgttaagagcagcttctcaaaaaataga 19134864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 40591458 - 40591419
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaat 117  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  40591458 cttcaaatgagaagctgttaagagcagcttctcaaaaaat 40591419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 17367517 - 17367559
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||||||||| ||||| ||||||||||||    
T  17367517 cttcaaatgagaagctgttaagagtagcttctcaaaaaataga 17367559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 25413562 - 25413604
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    |||||||||||||  ||||||||||||||| ||||||||||||    
T  25413562 cttcaaatgagaagttgttaagagcagcttctcaaaaaataga 25413604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 35781513 - 35781472
Alignment:
Q  79 ttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    |||||||||||| |||||||||||| ||| ||||||||||||    
T  35781513 ttcaaatgagaagctgttaagagcaacttatcaaaaaataga 35781472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 6537997 - 6538037
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaata 118  Q
    ||||||||||||| ||||||||| |||||| ||||||||||    
T  6537997 cttcaaatgagaagctgttaagaccagcttctcaaaaaata 6538037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 6046362 - 6046404
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  6046362 cttcaaatgagaagctgttaagagcagcttctcaaaaaataga 6046404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 19298461 - 19298503
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  19298461 cttcaaatgagaagctgttaagagcagcttctcaaaaaataga 19298503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 7238838 - 7238878
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaata 118  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  7238838 cttcaaatgagaaactgctaagagcagcttctcaaaaaata 7238878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 44886319 - 44886277
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||    
T  44886319 cttcaaatgagaagctgttaaaagcagcttctcaaaaaataga 44886277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 49867249 - 49867207
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| ||||| |||||||||| ||||||||||||    
T  49867249 cttcaaatgagaagctgttgagagcagcttctcaaaaaataga 49867207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 54175981 - 54175939
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| | |||||||||||||| ||||||||||||    
T  54175981 cttcaaatgagaagcggttaagagcagcttctcaaaaaataga 54175939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 8708166 - 8708124
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  8708166 cttcaaatgagaagctgttaagagcagcttctcaaaaaataga 8708124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 9060053 - 9060011
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  9060053 cttcaaatgagaagctgttaagagcagcttctcaaaaaataga 9060011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 23027534 - 23027572
Alignment:
Q  82 aaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  23027534 aaatgagaaactgttaagagcagcttctcaaaaaataga 23027572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 10334333 - 10334292
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaatag 119  Q
    ||||||||||||| |||||||||||||||| |||||||||||    
T  10334333 cttcaaatgagaagctgttaagagcagcttctcaaaaaatag 10334292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 54982034 - 54981994
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaata 118  Q
    ||||||||||||| |||||||||||||||| ||||||||||    
T  54982034 cttcaaatgagaagctgttaagagcagcttctcaaaaaata 54981994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 3942515 - 3942557
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    |||||||||| || |||||||||||||||| ||||||||||||    
T  3942515 cttcaaatgaaaagctgttaagagcagcttctcaaaaaataga 3942557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 34794410 - 34794452
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    |||||||||||||| | ||||||||||||| ||||||||||||    
T  34794410 cttcaaatgagaaaatattaagagcagcttctcaaaaaataga 34794452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 1030528 - 1030487
Alignment:
Q  79 ttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  1030528 ttcaaatgagaagctgttaagagcagcttctcaaaaaataga 1030487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 35308082 - 35308124
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    |||||||||||||  ||||||||||||||| ||||||||||||    
T  35308082 cttcaaatgagaagttgttaagagcagcttctcaaaaaataga 35308124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 5765311 - 5765352
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaatag 119  Q
    ||||||||||||| |||||||||||||||| ||| |||||||    
T  5765311 cttcaaatgagaagctgttaagagcagcttctcagaaaatag 5765352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 205391 - 205349
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| | |||||||||||||| ||||||||||||    
T  205391 cttcaaatgagaagccgttaagagcagcttctcaaaaaataga 205349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 3256251 - 3256209
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||||||||||||||| | ||||||||||    
T  3256251 cttcaaatgagaagctgttaagagcagcttcttaaaaaataga 3256209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 120
Target Start/End: Complemental strand, 20612836 - 20612798
Alignment:
Q  82 aaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  20612836 aaatgagaatctgttaagagcagcttctcaaaaaataga 20612798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 21479552 - 21479510
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| ||||||||| |||||| ||||||||||||    
T  21479552 cttcaaatgagaagctgttaagaccagcttctcaaaaaataga 21479510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 42676613 - 42676571
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaataga 120  Q
    ||||||||||||| |||| ||||||||||| ||||||||||||    
T  42676613 cttcaaatgagaagctgtcaagagcagcttctcaaaaaataga 42676571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 30666408 - 30666368
Alignment:
Q  78 cttcaaatgagaaactgttaagagcagcttttcaaaaaata 118  Q
    ||||||||||||| ||||||| |||||||| ||||||||||    
T  30666408 cttcaaatgagaagctgttaaaagcagcttctcaaaaaata 30666368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University