View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19122_low_16 (Length: 433)
Name: NF19122_low_16
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 29598715 - 29598508
Alignment:
| Q |
18 |
tatcactaacttcacagcaggctattcaattttttccattatcacaatatttagccatacatataaaaaatcaattactgatctcgtggttataacttat |
117 |
Q |
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| T |
29598715 |
tatcactaacttcacagcaggctattcaattttttccattattacaatagttagctatacatttaaaaaatcaattactgatctcgtggttataac---- |
29598620 |
T |
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| Q |
118 |
agtaatatattcatttccatctcgaaagactccgattccatgtgataaactctacggccggaccatcaatcaatattcaaatgcaactatgtttatatgt |
217 |
Q |
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| T |
29598619 |
agtaatatattcatttccatctcgaaagactccgattccatgtgataaactctacggccggaccatcaatcaatattcaaatgcaactatgtctatatgt |
29598520 |
T |
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| Q |
218 |
ctgtcaaaaata |
229 |
Q |
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|||||||||||| |
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| T |
29598519 |
ctgtcaaaaata |
29598508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 274 - 414
Target Start/End: Complemental strand, 29598431 - 29598291
Alignment:
| Q |
274 |
atggcatgtttgtttgtacgttggtaagagagtagacgtgcgtttattgagaagcccaaatactagcttcacaatattacgttgaattttgtctcggggt |
373 |
Q |
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| T |
29598431 |
atggcatgtttgtttgtaagttggtaagagaatagacgtgcgtttattgagaagcctaaatactatcttcacaatatcacgttgaattttgcctcgggat |
29598332 |
T |
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| Q |
374 |
gcaaaaatcgtgcctccaatgcacatccaaacagaggctaa |
414 |
Q |
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| T |
29598331 |
gcaaaaatcatgcctccagtgcacatccaaacagaggctaa |
29598291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 27912904 - 27912828
Alignment:
| Q |
280 |
tgtttgtttgtacgttggtaagagagtagacgtgcgtttattgagaagcc-caaatactagcttcacaatattacgt |
355 |
Q |
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| T |
27912904 |
tgtttgtttgtgcgttggggggaaagtaaacgtgtgtttattgagaagccacaaatactagcttcacaatatcacgt |
27912828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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