View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19122_low_17 (Length: 429)
Name: NF19122_low_17
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 149 - 414
Target Start/End: Original strand, 43082904 - 43083169
Alignment:
| Q |
149 |
taggcaatttctacgaacatgcatgctaaagtagannnnnnnnnnnnggaggaatttttgcatttcaccaacacaacaacgataagcacttctaaccaag |
248 |
Q |
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| T |
43082904 |
taggcaatttctacgaacatacatgctaaagtagattttttatttttggaggaatttttgcatttcaccaacacaacaacgataagcacttctaaccaag |
43083003 |
T |
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| Q |
249 |
tacatttcattattctcctattttcattttgtacggattcaaaaaagagtttctacgtactctctgcaacactttttcaacattttccagacttaccaaa |
348 |
Q |
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| T |
43083004 |
tacatttcattattctcctattttcattttgtacggattcaaaaaagagtttctacgtactctctgcaacactttttcaacattttccagacttaccaaa |
43083103 |
T |
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| Q |
349 |
ccatgaaacataccaacattttgtactatgactatcgaagaagccacttgcgccttaatcaaaact |
414 |
Q |
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| T |
43083104 |
ccatgaaacataccaacagttcgtactatgactatccaagaagccacttgcgccttaatcaaaact |
43083169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 43082805 - 43082901
Alignment:
| Q |
27 |
atatagttccaatttcaatcatttgccaaaaggatatgcatgttatctttaatatcggaatcacatagcacacaattatatggacaatttacccctc |
123 |
Q |
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| T |
43082805 |
atatagttccattttcaatcatttgccaaaaggatatgcatgttatctttaatatcggaatcacatagcacacaattatatggacaatttacccctc |
43082901 |
T |
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