View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19122_low_18 (Length: 385)
Name: NF19122_low_18
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 26099118 - 26099470
Alignment:
| Q |
17 |
acaatgaatccacagccactattgcaattagattgtgtgagaatcttgacaaaggaaacaacattgtagccatcgtcgttttcggcaggaacctctggag |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| |
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| T |
26099118 |
acaatgaatccacagccactattgcaatcagattgtgtgagaatcttgacaaaggaaacaacattgtaaccatcgtcgtcttcggcaggaacctccggag |
26099217 |
T |
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| Q |
117 |
gagtttcttgttcatggccatggccttccgttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctga |
216 |
Q |
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||| ||||||||| ||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
26099218 |
gagcttcttgttcgtggccatggccatccattacgggagtgaggagcagtttggcaaagacttcatctgtgtgaggatcaacaaggagatcaacggctga |
26099317 |
T |
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| Q |
217 |
gatgatgcaggaaatggaaggaggataacaatgaagaagggtgatgattgtgtgagttgagacatgttttaagtgaccttgtgggaagtagtaaacttta |
316 |
Q |
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| T |
26099318 |
gatgatgcaggaaatggaaggaggataacaatgaagaagggtgatgattgtgtgaggggagacatgttttaagtgaccttgtgggaagtagtaaacttta |
26099417 |
T |
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| Q |
317 |
gaatgtatcttcggaatcttgactgaggctccgacacatttctgccagatttt |
369 |
Q |
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| T |
26099418 |
gaatgtagcttcggaatcttgactgaggctccgacacatttctgccagatttt |
26099470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 25224863 - 25224814
Alignment:
| Q |
290 |
tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac |
339 |
Q |
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| T |
25224863 |
tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac |
25224814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 25289019 - 25288970
Alignment:
| Q |
290 |
tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac |
339 |
Q |
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| T |
25289019 |
tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac |
25288970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 25225016 - 25224928
Alignment:
| Q |
146 |
gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga |
234 |
Q |
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| T |
25225016 |
gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga |
25224928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 25289172 - 25289084
Alignment:
| Q |
146 |
gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga |
234 |
Q |
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| T |
25289172 |
gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga |
25289084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 25728232 - 25728320
Alignment:
| Q |
146 |
gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga |
234 |
Q |
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| T |
25728232 |
gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga |
25728320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 25728385 - 25728434
Alignment:
| Q |
290 |
tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac |
339 |
Q |
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| T |
25728385 |
tgacctcgtgggaagtagtaaactttagagtgaatctttggaatcttgac |
25728434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 25222582 - 25222655
Alignment:
| Q |
152 |
ggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgca |
225 |
Q |
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| T |
25222582 |
ggagtgaggagcagtttggcgaaaacctcgtcagtgagagcatcaacaaagagattaacggctgaaatgatgca |
25222655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 25286738 - 25286811
Alignment:
| Q |
152 |
ggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgca |
225 |
Q |
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||||||||||| |||||||| ||||| || || | | ||| |||||||| ||||| ||||||||| |||||||| |
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| T |
25286738 |
ggagtgaggagcagtttggcgaaaacctcgtcagtgagagcatcaacaaagagattaacggctgaaatgatgca |
25286811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 25618132 - 25618044
Alignment:
| Q |
146 |
gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga |
234 |
Q |
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||||||||||||||||| |||||||| || |||||||| | || ||||||| |||||||||| |||| ||||||||||| | |||||| |
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| T |
25618132 |
gttacgggagtgaggagcagtttggcgaagacttcatcagtgtaaggatcagcaaggagatcgacggtggagatgatgcacggaatgga |
25618044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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