View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19122_low_19 (Length: 371)
Name: NF19122_low_19
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 52 - 350
Target Start/End: Original strand, 38367134 - 38367432
Alignment:
| Q |
52 |
ctgcatgatttaaaatgtcaaaattctagtaaaactttgtttggagaatggtagagattgtctcccaactaggagcttgcaacaagaaaggtatcgtgtt |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38367134 |
ctgcatgatttaaaatgtcaaaattctagtaaaactttgtttggagaatggtagagattgtctcccaactaggagcttgcaacaagaaaggtatcgtgtt |
38367233 |
T |
|
| Q |
152 |
cttaaaattgtacttattgtgataattatggtgaaaatgttggacaccaaactgtattgatgttatgtttaatgatatgagatgagtttgcttttgtcaa |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38367234 |
cttaaaattgtacttattgtgataattatggtgaaaatgttggaccccaaactgtattgatgttatgtttaatgatatgagatgagtttgcttttgtcaa |
38367333 |
T |
|
| Q |
252 |
aaaagtatgtaattgattcataattaaattattaatacatcacatcaaactaagtgccttgaagttacaactattaagctagcacctaatgttaaaact |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38367334 |
aaaagtatgtaattgattcataattaaattattaatacatcacatcaaactaagtgccttgaagttacaactattaagctagcacctaatgttaaaact |
38367432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University