View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19122_low_2 (Length: 976)
Name: NF19122_low_2
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_low_2 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 683 - 957
Target Start/End: Complemental strand, 42169128 - 42168853
Alignment:
| Q |
683 |
gtggggtatgaagagaaagagaaaagtttgaatttttagttacctgagcaaggacacgaattctttcgagtttgtcaacaaaggtggtaccaacttcacg |
782 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42169128 |
gtggggtatgaagagaaagagaaaagtttgaatttttagttacctgagcaaggacacgaattctttcgagtttgtcaacaaaggtggtaccaacttcacg |
42169029 |
T |
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| Q |
783 |
atgaagaatgtcgttgagaagattaccaagcaacctacaatcatcatcaaagctctggaacgagatttcttcagcaatatcatctgtagtgtctgtcatt |
882 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42169028 |
atgaagaatgtcgttgagaagattaccaagcaacctacaatcatcatcaaagctctggaacgagatttcttcagcaatatcatctgtagtgtctgtcatt |
42168929 |
T |
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| Q |
883 |
gtgtgaacaagaaaagaacactgagcaagaaacaacagtgtaatgaagcaacaac-acacaaagaaacaaacgatg |
957 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42168928 |
gtgtgaacaagaaaagaacactgagcaagaaacaacagtgtaatgaagcaacaacaacacaaagaaacaaacgatg |
42168853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 183 - 475
Target Start/End: Complemental strand, 42169572 - 42169271
Alignment:
| Q |
183 |
tctcataaacggttataaaagtgcttatgtcactagataagcttgaataagtgaattcaaaaatgaaatttggaaagtagtattaattaccaacaaataa |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42169572 |
tctcataaacggttataaaagtgcttatgtcactagataagcttgaataagtgaattcaaaaatgaaatttggaaagtaatattaattaccaacaaataa |
42169473 |
T |
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| Q |
283 |
t--------gtgtagccatggattatt-attacctatggtgagtttcagctatacccatcatagtaagataatggctgaaagcacgagcaagagtgaaag |
373 |
Q |
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| T |
42169472 |
tcagagttagtgtagccatggattatttattacctatggtgagtttcagctatacccatcatagtaagataatggctgaaagcacgagcaagagtgaaag |
42169373 |
T |
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| Q |
374 |
cttcttctaatgacatctttgacaactctgaagctaactgcttctcaagtaactcagccatgttcactatacctgcttgcctcatattgcatgcactctg |
473 |
Q |
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| T |
42169372 |
cttcttctaatgacatctttgacaaatctgaagctaactgcttctcaagtaactcagccatgttcactatacctgcttgcctcatattgcatgcactctg |
42169273 |
T |
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| Q |
474 |
cc |
475 |
Q |
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|| |
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| T |
42169272 |
cc |
42169271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 42169831 - 42169655
Alignment:
| Q |
9 |
acatcatcacaagattttgaaatttgtgccatattccctcctttacgaaccctgtgaaaatgtaatttctgttagagattaccattaccctacgtaggcc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42169831 |
acatcatcacaagattttgaaatttgtgccatattccctcctttacgaaccctgtgaacatgtaatttctgttagagattaccattaccctacgtaggcc |
42169732 |
T |
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| Q |
109 |
ctgtttggataaacaacttaattagcctcatagcataaggacttatcatgatattcacttatctataagttatttct |
185 |
Q |
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| T |
42169731 |
ctgtttggataaacaacttaattagcctcatagcataaggactcatcatgatattcacttatctataagttatttct |
42169655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 548 - 590
Target Start/End: Complemental strand, 42169216 - 42169174
Alignment:
| Q |
548 |
gtgtcagtgcttcatagattttcacattcagcaagggggaaaa |
590 |
Q |
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| T |
42169216 |
gtgtcagtgcttcatagattttcacattaagcaagggggaaaa |
42169174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 493 - 534
Target Start/End: Complemental strand, 42169253 - 42169212
Alignment:
| Q |
493 |
tagaaacatcattcactagcactcacttatcaaaggcgtgtc |
534 |
Q |
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| T |
42169253 |
tagaaacatcattcactattactcacttatgaaaggcgtgtc |
42169212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 9e-42; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 372 - 475
Target Start/End: Original strand, 21686047 - 21686150
Alignment:
| Q |
372 |
agcttcttctaatgacatctttgacaactctgaagctaactgcttctcaagtaactcagccatgttcactatacctgcttgcctcatattgcatgcactc |
471 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
21686047 |
agcttcttctaaagacatctttgacaactctgaagctaactgcttctcaattaactcagccatgttcactatacctgcttgcctcatattacatccactc |
21686146 |
T |
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| Q |
472 |
tgcc |
475 |
Q |
| |
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|||| |
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| T |
21686147 |
tgcc |
21686150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 7725551 - 7725600
Alignment:
| Q |
299 |
attattacctatggtgagtttcagctatacccatcatagtaagataatgg |
348 |
Q |
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||||||||||||||||||||||||||||| | ||| ||||||||||||| |
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| T |
7725551 |
attattacctatggtgagtttcagctatatcagtcacagtaagataatgg |
7725600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 132
Target Start/End: Complemental strand, 5620290 - 5620261
Alignment:
| Q |
103 |
taggccctgtttggataaacaacttaatta |
132 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5620290 |
taggccctgtttggataaacaacttaatta |
5620261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 313 - 419
Target Start/End: Complemental strand, 333947 - 333841
Alignment:
| Q |
313 |
tgagtttcagctatacccatcatagtaagataatggctgaaagcacgagcaagagtgaaagcttcttctaatgacatctttgacaactctgaagctaact |
412 |
Q |
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|||||||||||||| | ||||||||||||||| || ||||| ||||||||||| || |||||||||||| |||||| || ||||||||||| |||| |
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| T |
333947 |
tgagtttcagctatgctcatcatagtaagatagtgactgaatgcacgagcaagtgtttgagcttcttctaagttcatcttggataactctgaagccaact |
333848 |
T |
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| Q |
413 |
gcttctc |
419 |
Q |
| |
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||||||| |
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| T |
333847 |
gcttctc |
333841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 796 - 881
Target Start/End: Complemental strand, 333617 - 333532
Alignment:
| Q |
796 |
ttgagaagattaccaagcaacctacaatcatcatcaaagctctggaacgagatttcttcagcaatatcatctgtagtgtctgtcat |
881 |
Q |
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||||||||||| ||||||||| |||| ||||| || |||| ||||| || ||||| || ||||| ||||| |||||||| ||||| |
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| T |
333617 |
ttgagaagatttccaagcaacttacagtcatcgtcgaagccttggaaggacatttcctcggcaatgtcatcagtagtgtccgtcat |
333532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 17823012 - 17823068
Alignment:
| Q |
103 |
taggccctgtttggataaacaacttaattagc--ctcatagcataaggacttatcat |
157 |
Q |
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|||||| |||||||||||||| ||||||| || |||||||||||||| |||||||| |
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| T |
17823012 |
taggccttgtttggataaacagcttaatttgcagctcatagcataagggcttatcat |
17823068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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